Wall clock time and date at job start Tue Mar 31 2020 00:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46711 * 2 1 4 4 H 1.09001 * 109.47431 * 306.03756 * 3 2 1 5 5 C 1.50710 * 109.46765 * 186.04186 * 3 2 1 6 6 H 1.07991 * 120.00061 * 244.15620 * 5 3 2 7 7 C 1.37877 * 119.99661 * 64.15441 * 5 3 2 8 8 N 1.31510 * 119.99741 * 194.67777 * 7 5 3 9 9 Si 1.86802 * 120.00277 * 14.68187 * 7 5 3 10 10 H 1.48502 * 109.47061 * 92.54057 * 9 7 5 11 11 H 1.48499 * 109.46949 * 212.53842 * 9 7 5 12 12 H 1.48498 * 109.47062 * 332.54270 * 9 7 5 13 13 N 1.46893 * 109.47401 * 66.04580 * 3 2 1 14 14 C 1.46907 * 110.99766 * 260.72269 * 13 3 2 15 15 C 1.50701 * 109.46722 * 183.60870 * 14 13 3 16 16 C 1.37993 * 119.58795 * 95.00395 * 15 14 13 17 17 C 1.39246 * 119.09106 * 180.02562 * 16 15 14 18 18 O 1.35737 * 120.84838 * 179.97438 * 17 16 15 19 19 C 1.42896 * 116.99874 * 3.02632 * 18 17 16 20 20 C 1.53002 * 109.47321 * 84.28914 * 19 18 17 21 21 C 1.53001 * 109.47409 * 204.28782 * 19 18 17 22 22 C 1.39288 * 118.30507 * 0.24770 * 17 16 15 23 23 C 1.37958 * 119.09095 * 359.50440 * 22 17 16 24 24 N 1.31946 * 119.58910 * 275.01312 * 15 14 13 25 25 H 1.09001 * 109.46860 * 301.12258 * 1 2 3 26 26 H 1.08994 * 109.47560 * 61.11818 * 1 2 3 27 27 H 1.08996 * 109.47120 * 181.12536 * 1 2 3 28 28 H 1.08998 * 109.46592 * 240.00504 * 2 1 3 29 29 H 1.08993 * 109.47021 * 120.00128 * 2 1 3 30 30 H 0.97005 * 120.00292 * 180.02562 * 8 7 5 31 31 H 1.00903 * 111.00304 * 136.76627 * 13 3 2 32 32 H 1.08995 * 109.46929 * 63.60837 * 14 13 3 33 33 H 1.08999 * 109.46747 * 303.60850 * 14 13 3 34 34 H 1.08004 * 120.45610 * 359.97438 * 16 15 14 35 35 H 1.08994 * 109.47369 * 324.28794 * 19 18 17 36 36 H 1.09003 * 109.47134 * 59.99766 * 20 19 18 37 37 H 1.09002 * 109.46911 * 299.99787 * 20 19 18 38 38 H 1.08998 * 109.47327 * 179.97438 * 20 19 18 39 39 H 1.09003 * 109.46889 * 300.00138 * 21 19 18 40 40 H 1.09001 * 109.46731 * 59.99618 * 21 19 18 41 41 H 1.08998 * 109.47426 * 180.02562 * 21 19 18 42 42 H 1.08003 * 120.45222 * 179.72289 * 22 17 16 43 43 H 1.08000 * 119.58351 * 180.27167 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5910 1.9866 -0.8310 5 6 3.5396 1.4452 -0.1496 6 1 4.1611 1.8240 0.6482 7 6 4.1180 0.9638 -1.3049 8 7 5.4049 0.6946 -1.3331 9 14 3.0736 0.6942 -2.8301 10 1 3.1121 1.9128 -3.6780 11 1 3.6070 -0.4598 -3.5975 12 1 1.6718 0.4156 -2.4272 13 7 1.6730 2.0916 1.2656 14 6 0.4729 2.9231 1.1022 15 6 0.1793 3.6405 2.3946 16 6 0.6455 4.9258 2.5815 17 6 0.3686 5.5789 3.7797 18 8 0.8101 6.8431 4.0016 19 6 1.5059 7.4845 2.9308 20 6 0.4951 8.1170 1.9722 21 6 2.4216 8.5718 3.4965 22 6 -0.3681 4.8996 4.7472 23 6 -0.8028 3.6175 4.4817 24 7 -0.5203 3.0319 3.3333 25 1 -0.3633 0.5312 0.8798 26 1 -0.3634 0.4963 -0.8998 27 1 -0.3633 -1.0274 0.0202 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 5.8120 0.3563 -2.1461 31 1 2.4418 2.6340 1.6301 32 1 -0.3741 2.2903 0.8373 33 1 0.6421 3.6537 0.3113 34 1 1.2180 5.4182 1.8093 35 1 2.1044 6.7486 2.3940 36 1 -0.1035 8.8530 2.5090 37 1 -0.1573 7.3424 1.5691 38 1 1.0258 8.6066 1.1557 39 1 1.8231 9.3078 4.0334 40 1 3.1418 8.1212 4.1795 41 1 2.9520 9.0614 2.6798 42 1 -0.5989 5.3715 5.6909 43 1 -1.3783 3.0851 5.2245 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594008318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:39 Heat of formation + Delta-G solvation = -8.208492 kcal Electronic energy + Delta-G solvation = -21804.808982 eV Core-core repulsion = 18657.241877 eV Total energy + Delta-G solvation = -3147.567105 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.72053 -38.67637 -36.54589 -33.74976 -32.91994 -31.83179 -30.91822 -30.29952 -27.72217 -27.49454 -24.81109 -23.98328 -22.45707 -21.64536 -21.10340 -19.63649 -18.21130 -16.90327 -16.80303 -15.76093 -15.71318 -15.42913 -14.78315 -14.45809 -14.22050 -13.81520 -13.71377 -13.43776 -13.10483 -12.84837 -12.82653 -12.62425 -12.39248 -12.35326 -12.09557 -11.71917 -11.49791 -11.41533 -11.22279 -10.90776 -10.80606 -10.62430 -10.25387 -9.81768 -9.43463 -9.22613 -9.13019 -8.99218 -8.78062 -8.47053 -7.45713 -6.14938 -4.11009 1.17430 1.44474 2.91858 3.25651 3.35957 3.39854 3.88000 4.38860 4.42721 4.49681 4.60303 4.74466 4.77622 4.92078 5.14991 5.17373 5.25758 5.29460 5.38380 5.43316 5.48850 5.57015 5.68459 5.77312 5.81587 5.88295 5.96016 6.10372 6.13444 6.16283 6.20892 6.36916 6.62857 6.68752 6.84503 7.05077 7.10757 7.19655 7.46019 7.65001 7.94221 8.23339 8.31967 8.58177 8.92905 9.50592 10.97859 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017474 B = 0.004579 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.955621 B = 6113.984743 C = 7099.106693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.107 4.107 3 C 0.193 3.807 4 H 0.004 0.996 5 C -0.533 4.533 6 H 0.075 0.925 7 C 0.079 3.921 8 N -0.890 5.890 9 Si 0.862 3.138 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.248 1.248 13 N -0.667 5.667 14 C 0.099 3.901 15 C 0.182 3.818 16 C -0.259 4.259 17 C 0.171 3.829 18 O -0.307 6.307 19 C 0.071 3.929 20 C -0.178 4.178 21 C -0.147 4.147 22 C -0.219 4.219 23 C 0.134 3.866 24 N -0.489 5.489 25 H 0.062 0.938 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.264 0.736 31 H 0.338 0.662 32 H 0.090 0.910 33 H 0.037 0.963 34 H 0.138 0.862 35 H 0.080 0.920 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.136 0.864 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.195 13.440 8.306 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C 0.084 3.916 4 H 0.022 0.978 5 C -0.571 4.571 6 H 0.093 0.907 7 C -0.125 4.125 8 N -0.527 5.527 9 Si 0.689 3.311 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.172 1.172 13 N -0.299 5.299 14 C -0.031 4.031 15 C 0.045 3.955 16 C -0.280 4.280 17 C 0.117 3.883 18 O -0.219 6.219 19 C 0.016 3.984 20 C -0.236 4.236 21 C -0.205 4.205 22 C -0.240 4.240 23 C -0.023 4.023 24 N -0.201 5.201 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.156 0.844 32 H 0.108 0.892 33 H 0.055 0.945 34 H 0.156 0.844 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.154 0.846 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.676 12.137 8.430 18.833 hybrid contribution 0.422 1.452 -1.421 2.075 sum -11.254 13.589 7.010 18.986 Atomic orbital electron populations 1.21951 0.98549 0.99809 1.00774 1.21842 0.92825 0.99111 1.00820 1.19495 0.95554 0.91006 0.85540 0.97838 1.21198 0.89380 1.43198 1.03310 0.90670 1.24887 0.94755 0.94041 0.98767 1.69978 1.11413 1.43311 1.28032 0.87213 0.82561 0.77880 0.83422 1.20869 1.21270 1.17192 1.60574 1.05648 1.32945 1.30691 1.21107 0.97140 0.95167 0.89676 1.21211 0.89901 0.89461 0.94974 1.22123 1.08236 0.98456 0.99193 1.19258 0.91729 0.83958 0.93306 1.86087 1.69980 1.24797 1.41071 1.22544 0.93342 0.94905 0.87644 1.22352 0.99882 1.01863 0.99487 1.21847 0.98859 0.97590 1.02155 1.21437 1.04626 0.97218 1.00685 1.22628 0.94902 0.90756 0.93998 1.67598 1.14599 1.36547 1.01405 0.91864 0.94556 0.94594 0.93187 0.92196 0.92625 0.84391 0.89174 0.94473 0.84419 0.90222 0.91519 0.91821 0.90700 0.91550 0.91480 0.90271 0.84581 0.82360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.11 37.16 0.34 -2.58 16 2 C -0.11 -2.41 4.84 -26.73 -0.13 -2.54 16 3 C 0.19 4.49 1.75 -68.86 -0.12 4.37 16 4 H 0.00 0.09 6.28 -51.93 -0.33 -0.23 16 5 C -0.53 -14.62 9.02 -34.44 -0.31 -14.93 16 6 H 0.08 2.23 7.70 -52.49 -0.40 1.83 16 7 C 0.08 2.22 5.33 -17.82 -0.10 2.13 16 8 N -0.89 -26.76 13.96 55.43 0.77 -25.98 16 9 Si 0.86 20.90 25.76 -169.99 -4.38 16.52 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.25 -5.68 5.44 56.52 0.31 -5.37 16 13 N -0.67 -13.79 6.14 -109.22 -0.67 -14.46 16 14 C 0.10 1.74 5.44 -4.97 -0.03 1.71 16 15 C 0.18 2.96 6.25 -82.63 -0.52 2.44 16 16 C -0.26 -3.71 8.10 -39.30 -0.32 -4.03 16 17 C 0.17 2.30 6.61 -38.82 -0.26 2.04 16 18 O -0.31 -3.79 9.82 -18.92 -0.19 -3.98 16 19 C 0.07 0.72 2.87 -26.73 -0.08 0.64 16 20 C -0.18 -1.57 9.31 37.16 0.35 -1.22 16 21 C -0.15 -1.18 9.56 37.16 0.36 -0.82 16 22 C -0.22 -2.70 10.08 -39.29 -0.40 -3.10 16 23 C 0.13 1.74 11.17 -17.59 -0.20 1.55 16 24 N -0.49 -7.92 10.27 -9.55 -0.10 -8.02 16 25 H 0.06 1.18 5.87 -51.93 -0.30 0.88 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 1.17 4.85 -51.93 -0.25 0.92 16 29 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.34 7.13 7.90 -39.29 -0.31 6.82 16 32 H 0.09 1.60 5.62 -51.93 -0.29 1.31 16 33 H 0.04 0.63 7.89 -51.93 -0.41 0.22 16 34 H 0.14 1.82 5.90 -52.48 -0.31 1.51 16 35 H 0.08 0.84 6.00 -51.93 -0.31 0.53 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.62 7.49 -51.93 -0.39 0.23 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.14 1.36 8.06 -52.48 -0.42 0.93 16 43 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 340.10 15.07 5.13 5.13 Total: -1.00 -30.77 340.10 -7.60 -38.37 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.77 Total: 6.77 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -1.40 Total: -14.35 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.01 Total: -48.46 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: -0.19 Total: -3.98 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.38 Total: 16.52 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.77 -7.60 -38.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594008318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.165 kcal (2) G-P(sol) polarization free energy of solvation -30.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds