Wall clock time and date at job start Tue Mar 31 2020 00:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46711 * 2 1 4 4 H 1.09001 * 109.47431 * 306.03756 * 3 2 1 5 5 C 1.50710 * 109.46765 * 186.04186 * 3 2 1 6 6 H 1.07991 * 120.00061 * 244.15620 * 5 3 2 7 7 C 1.37877 * 119.99661 * 64.15441 * 5 3 2 8 8 N 1.31510 * 119.99741 * 194.67777 * 7 5 3 9 9 Si 1.86802 * 120.00277 * 14.68187 * 7 5 3 10 10 H 1.48502 * 109.47061 * 92.54057 * 9 7 5 11 11 H 1.48499 * 109.46949 * 212.53842 * 9 7 5 12 12 H 1.48498 * 109.47062 * 332.54270 * 9 7 5 13 13 N 1.46893 * 109.47401 * 66.04580 * 3 2 1 14 14 C 1.46907 * 110.99766 * 260.72269 * 13 3 2 15 15 C 1.50701 * 109.46722 * 183.60870 * 14 13 3 16 16 C 1.37993 * 119.58795 * 95.00395 * 15 14 13 17 17 C 1.39246 * 119.09106 * 180.02562 * 16 15 14 18 18 O 1.35737 * 120.84838 * 179.97438 * 17 16 15 19 19 C 1.42896 * 116.99874 * 3.02632 * 18 17 16 20 20 C 1.53002 * 109.47321 * 84.28914 * 19 18 17 21 21 C 1.53001 * 109.47409 * 204.28782 * 19 18 17 22 22 C 1.39288 * 118.30507 * 0.24770 * 17 16 15 23 23 C 1.37958 * 119.09095 * 359.50440 * 22 17 16 24 24 N 1.31946 * 119.58910 * 275.01312 * 15 14 13 25 25 H 1.09001 * 109.46860 * 301.12258 * 1 2 3 26 26 H 1.08994 * 109.47560 * 61.11818 * 1 2 3 27 27 H 1.08996 * 109.47120 * 181.12536 * 1 2 3 28 28 H 1.08998 * 109.46592 * 240.00504 * 2 1 3 29 29 H 1.08993 * 109.47021 * 120.00128 * 2 1 3 30 30 H 0.97005 * 120.00292 * 180.02562 * 8 7 5 31 31 H 1.00903 * 111.00304 * 136.76627 * 13 3 2 32 32 H 1.08995 * 109.46929 * 63.60837 * 14 13 3 33 33 H 1.08999 * 109.46747 * 303.60850 * 14 13 3 34 34 H 1.08004 * 120.45610 * 359.97438 * 16 15 14 35 35 H 1.08994 * 109.47369 * 324.28794 * 19 18 17 36 36 H 1.09003 * 109.47134 * 59.99766 * 20 19 18 37 37 H 1.09002 * 109.46911 * 299.99787 * 20 19 18 38 38 H 1.08998 * 109.47327 * 179.97438 * 20 19 18 39 39 H 1.09003 * 109.46889 * 300.00138 * 21 19 18 40 40 H 1.09001 * 109.46731 * 59.99618 * 21 19 18 41 41 H 1.08998 * 109.47426 * 180.02562 * 21 19 18 42 42 H 1.08003 * 120.45222 * 179.72289 * 22 17 16 43 43 H 1.08000 * 119.58351 * 180.27167 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5910 1.9866 -0.8310 5 6 3.5396 1.4452 -0.1496 6 1 4.1611 1.8240 0.6482 7 6 4.1180 0.9638 -1.3049 8 7 5.4049 0.6946 -1.3331 9 14 3.0736 0.6942 -2.8301 10 1 3.1121 1.9128 -3.6780 11 1 3.6070 -0.4598 -3.5975 12 1 1.6718 0.4156 -2.4272 13 7 1.6730 2.0916 1.2656 14 6 0.4729 2.9231 1.1022 15 6 0.1793 3.6405 2.3946 16 6 0.6455 4.9258 2.5815 17 6 0.3686 5.5789 3.7797 18 8 0.8101 6.8431 4.0016 19 6 1.5059 7.4845 2.9308 20 6 0.4951 8.1170 1.9722 21 6 2.4216 8.5718 3.4965 22 6 -0.3681 4.8996 4.7472 23 6 -0.8028 3.6175 4.4817 24 7 -0.5203 3.0319 3.3333 25 1 -0.3633 0.5312 0.8798 26 1 -0.3634 0.4963 -0.8998 27 1 -0.3633 -1.0274 0.0202 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 5.8120 0.3563 -2.1461 31 1 2.4418 2.6340 1.6301 32 1 -0.3741 2.2903 0.8373 33 1 0.6421 3.6537 0.3113 34 1 1.2180 5.4182 1.8093 35 1 2.1044 6.7486 2.3940 36 1 -0.1035 8.8530 2.5090 37 1 -0.1573 7.3424 1.5691 38 1 1.0258 8.6066 1.1557 39 1 1.8231 9.3078 4.0334 40 1 3.1418 8.1212 4.1795 41 1 2.9520 9.0614 2.6798 42 1 -0.5989 5.3715 5.6909 43 1 -1.3783 3.0851 5.2245 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594008318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:39 Heat of formation + Delta-G solvation = -28.999786 kcal Electronic energy + Delta-G solvation = -21805.710560 eV Core-core repulsion = 18657.241877 eV Total energy + Delta-G solvation = -3148.468683 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.74136 -39.69311 -38.21648 -34.91819 -34.35102 -33.56968 -31.95857 -31.67918 -29.39541 -28.23139 -26.35305 -24.96562 -24.21139 -22.80183 -22.02306 -21.44829 -19.42420 -18.71605 -17.88385 -17.19962 -16.74080 -16.63631 -15.93623 -15.78617 -15.66694 -15.18069 -14.90776 -14.80132 -14.61744 -14.23109 -13.86114 -13.77929 -13.52304 -13.42753 -13.25134 -13.08319 -12.95123 -12.67337 -12.65709 -12.43363 -12.08393 -11.93627 -11.69772 -11.62899 -11.19693 -11.08287 -10.62534 -10.39344 -10.11015 -9.79910 -9.11681 -8.32988 -6.33608 0.09880 0.38081 1.34084 1.38191 1.49136 2.03612 2.34722 2.76705 3.01959 3.32141 3.57233 3.70737 3.80423 3.86011 3.93359 4.08090 4.22190 4.37952 4.46958 4.51022 4.52624 4.58328 4.64155 4.65066 4.72817 4.76318 4.81232 4.85587 4.90709 4.97946 5.07142 5.16750 5.21956 5.22826 5.28073 5.44115 5.55853 5.61138 5.80903 5.98899 6.23867 6.45145 6.62988 6.81339 7.14495 7.32257 8.83419 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017474 B = 0.004579 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.955621 B = 6113.984743 C = 7099.106693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 C 0.199 3.801 4 H 0.008 0.992 5 C -0.537 4.537 6 H 0.035 0.965 7 C 0.024 3.976 8 N -0.940 5.940 9 Si 0.926 3.074 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.224 1.224 13 N -0.670 5.670 14 C 0.103 3.897 15 C 0.163 3.837 16 C -0.262 4.262 17 C 0.165 3.835 18 O -0.312 6.312 19 C 0.062 3.938 20 C -0.174 4.174 21 C -0.144 4.144 22 C -0.212 4.212 23 C 0.130 3.870 24 N -0.516 5.516 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.266 0.734 31 H 0.331 0.669 32 H 0.091 0.909 33 H 0.043 0.957 34 H 0.142 0.858 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.164 0.836 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.493 14.397 8.406 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 C 0.090 3.910 4 H 0.026 0.974 5 C -0.575 4.575 6 H 0.053 0.947 7 C -0.175 4.175 8 N -0.579 5.579 9 Si 0.750 3.250 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.147 1.147 13 N -0.301 5.301 14 C -0.026 4.026 15 C 0.025 3.975 16 C -0.283 4.283 17 C 0.111 3.889 18 O -0.224 6.224 19 C 0.007 3.993 20 C -0.231 4.231 21 C -0.201 4.201 22 C -0.233 4.233 23 C -0.026 4.026 24 N -0.230 5.230 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.148 0.852 32 H 0.109 0.891 33 H 0.061 0.939 34 H 0.160 0.840 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.115 0.885 42 H 0.181 0.819 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -13.998 13.110 8.546 20.997 hybrid contribution 1.189 1.244 -1.299 2.156 sum -12.809 14.354 7.247 20.558 Atomic orbital electron populations 1.21837 0.95452 1.01390 1.01384 1.21770 0.95547 0.97789 0.99590 1.19354 0.92643 0.92169 0.86860 0.97440 1.21478 0.91572 1.42262 1.02202 0.94650 1.25741 0.95875 0.93853 1.02045 1.70113 1.13564 1.45139 1.29063 0.86191 0.81931 0.77868 0.79049 1.20178 1.21254 1.14672 1.60527 1.06401 1.33953 1.29207 1.21056 0.95445 0.95000 0.91120 1.20979 0.91535 0.90132 0.94811 1.22144 1.08187 0.98021 0.99953 1.19443 0.91771 0.84481 0.93202 1.86092 1.70019 1.24232 1.42043 1.22792 0.93773 0.95131 0.87598 1.22328 0.99562 1.01571 0.99684 1.21871 0.98487 0.97047 1.02720 1.21784 1.03250 0.96911 1.01332 1.23169 0.94661 0.91207 0.93531 1.67540 1.15356 1.37572 1.02504 0.91721 0.93480 0.92549 0.94118 0.93829 0.92495 0.85156 0.89059 0.93878 0.84037 0.91256 0.90828 0.93090 0.89093 0.90744 0.92074 0.88539 0.81859 0.79137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.08 9.11 71.98 0.66 -4.43 16 2 C -0.11 -4.75 4.84 30.60 0.15 -4.60 16 3 C 0.20 9.23 1.75 44.17 0.08 9.31 16 4 H 0.01 0.36 6.28 -2.39 -0.01 0.35 16 5 C -0.54 -30.27 9.02 25.60 0.23 -30.04 16 6 H 0.04 2.22 7.70 -2.92 -0.02 2.19 16 7 C 0.02 1.36 5.33 84.66 0.45 1.81 16 8 N -0.94 -58.11 13.96 21.45 0.30 -57.81 16 9 Si 0.93 42.93 25.76 68.60 1.77 44.70 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.22 -9.44 5.44 99.48 0.54 -8.90 16 13 N -0.67 -27.87 6.14 -499.45 -3.06 -30.93 16 14 C 0.10 3.57 5.44 85.56 0.47 4.03 16 15 C 0.16 5.19 6.25 42.48 0.27 5.46 16 16 C -0.26 -7.39 8.10 22.45 0.18 -7.21 16 17 C 0.16 4.22 6.61 22.77 0.15 4.37 16 18 O -0.31 -7.27 9.82 -90.61 -0.89 -8.16 16 19 C 0.06 1.18 2.87 30.60 0.09 1.27 16 20 C -0.17 -2.80 9.31 71.98 0.67 -2.13 16 21 C -0.14 -2.08 9.56 71.98 0.69 -1.39 16 22 C -0.21 -4.77 10.08 22.46 0.23 -4.55 16 23 C 0.13 3.12 11.17 84.61 0.95 4.07 16 24 N -0.52 -16.14 10.27 -184.12 -1.89 -18.03 16 25 H 0.06 2.28 5.87 -2.39 -0.01 2.26 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.04 1.84 4.85 -2.39 -0.01 1.82 16 29 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 31 H 0.33 14.44 7.90 -89.69 -0.71 13.73 16 32 H 0.09 3.12 5.62 -2.39 -0.01 3.10 16 33 H 0.04 1.43 7.89 -2.39 -0.02 1.41 16 34 H 0.14 3.75 5.90 -2.91 -0.02 3.73 16 35 H 0.07 1.45 6.00 -2.39 -0.01 1.44 16 36 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.05 0.95 7.49 -2.39 -0.02 0.93 16 38 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 43 H 0.19 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -67.26 340.10 1.59 -65.66 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: 0.13 Total: 28.60 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: 5.24 Total: -24.03 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -4.66 Total: -106.78 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.89 Total: -8.16 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.77 Total: 44.70 kcal Total: -67.26 1.59 -65.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594008318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.664 kcal (2) G-P(sol) polarization free energy of solvation -67.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds