Wall clock time and date at job start Tue Mar 31 2020 00:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46982 * 2 1 4 4 H 1.08996 * 109.46866 * 54.60121 * 3 2 1 5 5 C 1.50697 * 109.47161 * 174.60214 * 3 2 1 6 6 H 1.08000 * 119.99881 * 120.00037 * 5 3 2 7 7 C 1.37877 * 120.00124 * 300.00368 * 5 3 2 8 8 N 1.31519 * 120.00014 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00082 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47140 * 59.99604 * 9 7 5 11 11 H 1.48501 * 109.47017 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46748 * 299.99303 * 9 7 5 13 13 N 1.46903 * 109.46924 * 294.60162 * 3 2 1 14 14 C 1.46907 * 110.99722 * 152.96026 * 13 3 2 15 15 C 1.50702 * 109.46859 * 185.10475 * 14 13 3 16 16 C 1.37988 * 119.58538 * 95.00469 * 15 14 13 17 17 C 1.39246 * 119.09097 * 179.97438 * 16 15 14 18 18 O 1.35740 * 120.85208 * 179.97438 * 17 16 15 19 19 C 1.42906 * 116.99388 * 2.80403 * 18 17 16 20 20 C 1.53004 * 109.47079 * 84.55346 * 19 18 17 21 21 C 1.53000 * 109.46889 * 204.55187 * 19 18 17 22 22 C 1.39291 * 118.30655 * 0.24982 * 17 16 15 23 23 C 1.37950 * 119.08717 * 359.50290 * 22 17 16 24 24 N 1.31946 * 119.58975 * 274.98281 * 15 14 13 25 25 H 1.09001 * 109.46798 * 185.06648 * 1 2 3 26 26 H 1.08998 * 109.47300 * 305.06411 * 1 2 3 27 27 H 1.08994 * 109.47483 * 65.06505 * 1 2 3 28 28 H 1.09003 * 109.46845 * 239.99916 * 2 1 3 29 29 H 1.08997 * 109.47029 * 119.99686 * 2 1 3 30 30 H 0.96996 * 119.99799 * 180.02562 * 8 7 5 31 31 H 1.00896 * 111.00418 * 276.91592 * 13 3 2 32 32 H 1.09003 * 109.46686 * 65.10759 * 14 13 3 33 33 H 1.08995 * 109.46976 * 305.10803 * 14 13 3 34 34 H 1.07999 * 120.45979 * 359.97438 * 16 15 14 35 35 H 1.08993 * 109.47215 * 324.55018 * 19 18 17 36 36 H 1.08997 * 109.46895 * 59.99857 * 20 19 18 37 37 H 1.08999 * 109.46724 * 299.99276 * 20 19 18 38 38 H 1.09005 * 109.46822 * 179.97438 * 20 19 18 39 39 H 1.09005 * 109.47412 * 299.99999 * 21 19 18 40 40 H 1.09000 * 109.47438 * 60.00125 * 21 19 18 41 41 H 1.08996 * 109.47155 * 180.02562 * 21 19 18 42 42 H 1.07994 * 120.45387 * 179.72347 * 22 17 16 43 43 H 1.07997 * 119.58631 * 180.27352 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5999 1.9834 0.8377 5 6 3.5410 1.4447 0.1337 6 1 4.1514 1.8875 -0.6395 7 6 4.1352 0.8813 1.2430 8 7 3.3919 0.3424 2.1847 9 14 5.9959 0.8846 1.4090 10 1 6.4903 2.2848 1.4093 11 1 6.3804 0.2240 2.6821 12 1 6.5959 0.1479 0.2677 13 7 1.6596 2.0963 -1.2593 14 6 1.5325 3.5490 -1.0808 15 6 1.0213 4.1689 -2.3558 16 6 -0.3308 4.3986 -2.5072 17 6 -0.7918 4.9724 -3.6893 18 8 -2.1144 5.2136 -3.8764 19 6 -2.9894 4.9102 -2.7881 20 6 -3.0238 6.0917 -1.8166 21 6 -4.3986 4.6496 -3.3241 22 6 0.1383 5.2872 -4.6773 23 6 1.4740 5.0308 -4.4470 24 7 1.8724 4.4856 -3.3131 25 1 -0.3633 -1.0237 0.0908 26 1 -0.3634 0.5904 0.8411 27 1 -0.3634 0.4332 -0.9318 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8100 -0.0536 2.9653 31 1 2.3170 1.8783 -1.9930 32 1 2.5071 3.9716 -0.8365 33 1 0.8334 3.7556 -0.2705 34 1 -1.0222 4.1370 -1.7199 35 1 -2.6286 4.0227 -2.2683 36 1 -3.3847 6.9791 -2.3364 37 1 -2.0199 6.2772 -1.4347 38 1 -3.6916 5.8604 -0.9867 39 1 -4.7595 5.5371 -3.8440 40 1 -4.3742 3.8079 -4.0163 41 1 -5.0661 4.4185 -2.4941 42 1 -0.1816 5.7292 -5.6092 43 1 2.2025 5.2758 -5.2057 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594008319.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:42 Heat of formation + Delta-G solvation = -18.373180 kcal Electronic energy + Delta-G solvation = -21721.344054 eV Core-core repulsion = 18573.336175 eV Total energy + Delta-G solvation = -3148.007879 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.62959 -38.58865 -36.15187 -33.71306 -32.90120 -31.52323 -30.85646 -30.17659 -27.55360 -26.80055 -24.71500 -23.92728 -22.60742 -21.55889 -20.93285 -19.50435 -18.02561 -16.86578 -16.49469 -15.69136 -15.64514 -14.91389 -14.70043 -14.46861 -14.30078 -13.71655 -13.59077 -13.20877 -13.06150 -12.81098 -12.62638 -12.50372 -12.31955 -11.98011 -11.84784 -11.48306 -11.23877 -11.14623 -11.06252 -10.87620 -10.71832 -10.64425 -10.14868 -9.64258 -9.57583 -9.25311 -9.04916 -8.86254 -8.71413 -8.36466 -7.27741 -5.98473 -4.10839 1.29127 1.52424 2.97754 3.31305 3.35669 3.39371 3.97870 4.41940 4.50656 4.57615 4.65144 4.82891 4.84816 5.01385 5.24355 5.27527 5.28124 5.38706 5.46096 5.52321 5.62735 5.64796 5.79695 5.87742 5.90933 5.95544 6.07797 6.30909 6.39890 6.49003 6.55088 6.69387 6.74225 7.11419 7.15504 7.27002 7.42666 7.57561 7.79020 8.08016 8.13929 8.31032 8.31617 8.64388 9.00988 9.56784 11.01932 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020990 B = 0.004127 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.680092 B = 6782.981616 C = 7604.055125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.546 4.546 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.681 5.681 14 C 0.110 3.890 15 C 0.187 3.813 16 C -0.246 4.246 17 C 0.167 3.833 18 O -0.309 6.309 19 C 0.072 3.928 20 C -0.178 4.178 21 C -0.147 4.147 22 C -0.221 4.221 23 C 0.133 3.867 24 N -0.503 5.503 25 H 0.024 0.976 26 H 0.036 0.964 27 H 0.045 0.955 28 H 0.031 0.969 29 H 0.091 0.909 30 H 0.262 0.738 31 H 0.334 0.666 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.139 0.861 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.135 0.865 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.702 9.558 -9.655 18.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.585 4.585 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.312 5.312 14 C -0.020 4.020 15 C 0.049 3.951 16 C -0.267 4.267 17 C 0.114 3.886 18 O -0.221 6.221 19 C 0.016 3.984 20 C -0.236 4.236 21 C -0.204 4.204 22 C -0.243 4.243 23 C -0.023 4.023 24 N -0.216 5.216 25 H 0.044 0.956 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.151 0.849 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.157 0.843 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.153 0.847 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.637 9.258 -9.394 18.266 hybrid contribution 1.079 0.345 0.251 1.160 sum -11.559 9.603 -9.143 17.590 Atomic orbital electron populations 1.21691 0.99096 0.98320 1.00204 1.21498 0.92016 0.99156 1.01753 1.19176 0.93091 0.91221 0.85670 0.94978 1.21854 0.92698 1.38377 1.05536 0.92651 1.24921 0.97950 0.94918 0.95668 1.69867 1.34887 1.38375 1.09348 0.86698 0.86010 0.78247 0.77294 1.20343 1.21294 1.20249 1.60953 1.54464 1.04766 1.10977 1.20718 1.00052 0.90880 0.90325 1.21373 0.88632 0.90360 0.94697 1.22041 0.98052 1.07412 0.99174 1.19290 0.83527 0.92163 0.93596 1.86078 1.14187 1.80702 1.41107 1.22533 0.90090 0.98589 0.87217 1.22350 1.03285 0.98593 0.99354 1.21844 0.93513 1.02860 1.02199 1.21387 0.93144 1.09223 1.00513 1.22566 0.93000 0.92558 0.94218 1.67620 1.39251 1.13346 1.01433 0.95643 0.94456 0.93638 0.95045 0.89034 0.92850 0.84927 0.93120 0.90660 0.84349 0.90142 0.91588 0.91731 0.90754 0.91593 0.91577 0.90347 0.84737 0.82544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.75 37.16 0.36 -2.41 16 2 C -0.11 -2.52 5.45 -26.73 -0.15 -2.67 16 3 C 0.22 5.30 1.98 -68.86 -0.14 5.17 16 4 H 0.03 0.86 7.69 -51.93 -0.40 0.46 16 5 C -0.55 -14.75 8.51 -34.44 -0.29 -15.04 16 6 H 0.06 1.51 7.71 -52.49 -0.40 1.10 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -24.88 11.29 55.43 0.63 -24.26 16 9 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.68 -14.52 5.78 -109.22 -0.63 -15.15 16 14 C 0.11 2.13 5.82 -4.97 -0.03 2.10 16 15 C 0.19 3.22 6.33 -82.63 -0.52 2.69 16 16 C -0.25 -3.69 8.11 -39.30 -0.32 -4.01 16 17 C 0.17 2.34 6.62 -38.82 -0.26 2.08 16 18 O -0.31 -3.89 9.82 -18.93 -0.19 -4.08 16 19 C 0.07 0.72 2.87 -26.73 -0.08 0.65 16 20 C -0.18 -1.60 9.32 37.16 0.35 -1.25 16 21 C -0.15 -1.15 9.56 37.16 0.36 -0.80 16 22 C -0.22 -2.87 10.08 -39.30 -0.40 -3.27 16 23 C 0.13 1.84 11.17 -17.60 -0.20 1.64 16 24 N -0.50 -8.63 10.27 -9.55 -0.10 -8.72 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.89 7.91 -51.93 -0.41 0.48 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.09 2.43 5.94 -51.93 -0.31 2.12 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.33 7.40 8.42 -39.29 -0.33 7.07 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.08 1.38 7.82 -51.93 -0.41 0.98 16 34 H 0.14 1.91 5.90 -52.49 -0.31 1.60 16 35 H 0.08 0.86 5.99 -51.93 -0.31 0.54 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.65 7.51 -51.93 -0.39 0.26 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 351.46 15.07 5.30 5.30 Total: -1.00 -29.02 351.46 -8.47 -37.49 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -7.06 Total: 6.53 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -1.40 Total: -13.36 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.10 Total: -48.13 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -0.19 Total: -4.08 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.02 -8.47 -37.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594008319.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.120 kcal (2) G-P(sol) polarization free energy of solvation -29.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds