Wall clock time and date at job start Tue Mar 31 2020 00:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46982 * 2 1 4 4 H 1.08996 * 109.46866 * 54.60121 * 3 2 1 5 5 C 1.50697 * 109.47161 * 174.60214 * 3 2 1 6 6 H 1.08000 * 119.99881 * 120.00037 * 5 3 2 7 7 C 1.37877 * 120.00124 * 300.00368 * 5 3 2 8 8 N 1.31519 * 120.00014 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00082 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47140 * 59.99604 * 9 7 5 11 11 H 1.48501 * 109.47017 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46748 * 299.99303 * 9 7 5 13 13 N 1.46903 * 109.46924 * 294.60162 * 3 2 1 14 14 C 1.46907 * 110.99722 * 152.96026 * 13 3 2 15 15 C 1.50702 * 109.46859 * 185.10475 * 14 13 3 16 16 C 1.37988 * 119.58538 * 95.00469 * 15 14 13 17 17 C 1.39246 * 119.09097 * 179.97438 * 16 15 14 18 18 O 1.35740 * 120.85208 * 179.97438 * 17 16 15 19 19 C 1.42906 * 116.99388 * 2.80403 * 18 17 16 20 20 C 1.53004 * 109.47079 * 84.55346 * 19 18 17 21 21 C 1.53000 * 109.46889 * 204.55187 * 19 18 17 22 22 C 1.39291 * 118.30655 * 0.24982 * 17 16 15 23 23 C 1.37950 * 119.08717 * 359.50290 * 22 17 16 24 24 N 1.31946 * 119.58975 * 274.98281 * 15 14 13 25 25 H 1.09001 * 109.46798 * 185.06648 * 1 2 3 26 26 H 1.08998 * 109.47300 * 305.06411 * 1 2 3 27 27 H 1.08994 * 109.47483 * 65.06505 * 1 2 3 28 28 H 1.09003 * 109.46845 * 239.99916 * 2 1 3 29 29 H 1.08997 * 109.47029 * 119.99686 * 2 1 3 30 30 H 0.96996 * 119.99799 * 180.02562 * 8 7 5 31 31 H 1.00896 * 111.00418 * 276.91592 * 13 3 2 32 32 H 1.09003 * 109.46686 * 65.10759 * 14 13 3 33 33 H 1.08995 * 109.46976 * 305.10803 * 14 13 3 34 34 H 1.07999 * 120.45979 * 359.97438 * 16 15 14 35 35 H 1.08993 * 109.47215 * 324.55018 * 19 18 17 36 36 H 1.08997 * 109.46895 * 59.99857 * 20 19 18 37 37 H 1.08999 * 109.46724 * 299.99276 * 20 19 18 38 38 H 1.09005 * 109.46822 * 179.97438 * 20 19 18 39 39 H 1.09005 * 109.47412 * 299.99999 * 21 19 18 40 40 H 1.09000 * 109.47438 * 60.00125 * 21 19 18 41 41 H 1.08996 * 109.47155 * 180.02562 * 21 19 18 42 42 H 1.07994 * 120.45387 * 179.72347 * 22 17 16 43 43 H 1.07997 * 119.58631 * 180.27352 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5999 1.9834 0.8377 5 6 3.5410 1.4447 0.1337 6 1 4.1514 1.8875 -0.6395 7 6 4.1352 0.8813 1.2430 8 7 3.3919 0.3424 2.1847 9 14 5.9959 0.8846 1.4090 10 1 6.4903 2.2848 1.4093 11 1 6.3804 0.2240 2.6821 12 1 6.5959 0.1479 0.2677 13 7 1.6596 2.0963 -1.2593 14 6 1.5325 3.5490 -1.0808 15 6 1.0213 4.1689 -2.3558 16 6 -0.3308 4.3986 -2.5072 17 6 -0.7918 4.9724 -3.6893 18 8 -2.1144 5.2136 -3.8764 19 6 -2.9894 4.9102 -2.7881 20 6 -3.0238 6.0917 -1.8166 21 6 -4.3986 4.6496 -3.3241 22 6 0.1383 5.2872 -4.6773 23 6 1.4740 5.0308 -4.4470 24 7 1.8724 4.4856 -3.3131 25 1 -0.3633 -1.0237 0.0908 26 1 -0.3634 0.5904 0.8411 27 1 -0.3634 0.4332 -0.9318 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8100 -0.0536 2.9653 31 1 2.3170 1.8783 -1.9930 32 1 2.5071 3.9716 -0.8365 33 1 0.8334 3.7556 -0.2705 34 1 -1.0222 4.1370 -1.7199 35 1 -2.6286 4.0227 -2.2683 36 1 -3.3847 6.9791 -2.3364 37 1 -2.0199 6.2772 -1.4347 38 1 -3.6916 5.8604 -0.9867 39 1 -4.7595 5.5371 -3.8440 40 1 -4.3742 3.8079 -4.0163 41 1 -5.0661 4.4185 -2.4941 42 1 -0.1816 5.7292 -5.6092 43 1 2.2025 5.2758 -5.2057 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594008319.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:42 Heat of formation + Delta-G solvation = -35.899092 kcal Electronic energy + Delta-G solvation = -21722.104034 eV Core-core repulsion = 18573.336175 eV Total energy + Delta-G solvation = -3148.767860 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.70460 -39.64404 -37.94857 -34.93276 -34.26872 -33.32567 -31.97813 -31.60620 -28.65348 -28.17560 -26.38306 -24.95191 -24.40012 -22.75531 -21.91488 -21.41771 -19.11841 -18.69244 -17.76939 -16.85161 -16.70657 -16.60524 -16.04384 -15.83565 -15.43354 -15.33250 -14.74949 -14.70695 -14.33464 -14.04970 -13.71917 -13.54825 -13.40893 -13.28846 -13.07609 -13.01201 -12.98634 -12.74893 -12.51743 -12.38175 -12.07676 -12.01728 -11.67341 -11.51814 -11.41258 -11.04949 -10.46858 -10.42424 -10.05396 -9.78825 -9.10817 -8.06158 -6.27197 0.14486 0.40114 1.40017 1.40281 1.48214 2.07109 2.40993 2.80082 3.14349 3.34629 3.64259 3.79193 3.88044 3.95824 3.99203 4.11937 4.25590 4.40006 4.51609 4.64681 4.65977 4.68433 4.76247 4.76910 4.81276 4.85548 4.90226 4.92772 5.01130 5.13408 5.17729 5.20835 5.26922 5.41518 5.50946 5.61206 5.64403 5.75587 6.09157 6.17190 6.27437 6.34750 6.72358 6.96418 7.14869 7.43653 8.90868 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020990 B = 0.004127 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.680092 B = 6782.981616 C = 7604.055125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.102 4.102 3 C 0.223 3.777 4 H 0.006 0.994 5 C -0.563 4.563 6 H 0.046 0.954 7 C 0.024 3.976 8 N -0.908 5.908 9 Si 0.949 3.051 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.274 1.274 13 N -0.669 5.669 14 C 0.118 3.882 15 C 0.166 3.834 16 C -0.245 4.245 17 C 0.165 3.835 18 O -0.311 6.311 19 C 0.062 3.938 20 C -0.175 4.175 21 C -0.143 4.143 22 C -0.213 4.213 23 C 0.130 3.870 24 N -0.535 5.535 25 H 0.044 0.956 26 H 0.034 0.966 27 H 0.054 0.946 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.263 0.737 31 H 0.329 0.671 32 H 0.025 0.975 33 H 0.078 0.922 34 H 0.145 0.855 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.097 0.903 42 H 0.165 0.835 43 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.795 10.236 -10.992 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.140 4.140 3 C 0.114 3.886 4 H 0.024 0.976 5 C -0.602 4.602 6 H 0.064 0.936 7 C -0.177 4.177 8 N -0.547 5.547 9 Si 0.775 3.225 10 H -0.202 1.202 11 H -0.206 1.206 12 H -0.199 1.199 13 N -0.298 5.298 14 C -0.013 4.013 15 C 0.030 3.970 16 C -0.267 4.267 17 C 0.112 3.888 18 O -0.224 6.224 19 C 0.007 3.993 20 C -0.233 4.233 21 C -0.200 4.200 22 C -0.233 4.233 23 C -0.026 4.026 24 N -0.249 5.249 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.044 0.956 33 H 0.096 0.904 34 H 0.163 0.837 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.116 0.884 42 H 0.182 0.818 43 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -13.748 9.944 -10.739 20.080 hybrid contribution 1.348 0.199 0.611 1.494 sum -12.400 10.143 -10.127 18.952 Atomic orbital electron populations 1.21541 0.96250 0.99675 1.00565 1.21358 0.94542 0.98117 1.00030 1.18975 0.91755 0.91682 0.86143 0.97575 1.22125 0.94114 1.38419 1.05528 0.93580 1.25607 1.01971 0.94646 0.95432 1.69981 1.36357 1.38737 1.09631 0.85764 0.81183 0.78171 0.77418 1.20199 1.20606 1.19886 1.60889 1.53550 1.06171 1.09221 1.20604 0.98947 0.89462 0.92249 1.20970 0.89575 0.92251 0.94230 1.22028 0.97148 1.07422 1.00068 1.19430 0.84447 0.91667 0.93286 1.86093 1.13583 1.80487 1.42197 1.22812 0.90721 0.98722 0.87055 1.22336 1.02814 0.98402 0.99702 1.21866 0.92211 1.03023 1.02906 1.21742 0.92591 1.07802 1.01199 1.23098 0.94305 0.91597 0.93648 1.67535 1.40105 1.14637 1.02619 0.93660 0.94645 0.92738 0.95602 0.91773 0.92785 0.85497 0.95648 0.90351 0.83732 0.90917 0.90972 0.93328 0.88950 0.90951 0.91917 0.88410 0.81776 0.79363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 9.75 71.98 0.70 -4.23 16 2 C -0.10 -4.93 5.45 30.60 0.17 -4.76 16 3 C 0.22 11.25 1.98 44.17 0.09 11.34 16 4 H 0.01 0.35 7.69 -2.39 -0.02 0.33 16 5 C -0.56 -31.20 8.51 25.60 0.22 -30.98 16 6 H 0.05 2.58 7.71 -2.91 -0.02 2.56 16 7 C 0.02 1.32 5.29 84.65 0.45 1.76 16 8 N -0.91 -51.84 11.29 21.45 0.24 -51.60 16 9 Si 0.95 44.08 29.54 68.60 2.03 46.10 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 N -0.67 -29.18 5.78 -499.45 -2.88 -32.07 16 14 C 0.12 4.68 5.82 85.56 0.50 5.18 16 15 C 0.17 5.78 6.33 42.48 0.27 6.05 16 16 C -0.25 -7.25 8.11 22.45 0.18 -7.07 16 17 C 0.17 4.35 6.62 22.77 0.15 4.50 16 18 O -0.31 -7.25 9.82 -90.64 -0.89 -8.14 16 19 C 0.06 1.15 2.87 30.60 0.09 1.24 16 20 C -0.18 -2.84 9.32 71.98 0.67 -2.17 16 21 C -0.14 -1.90 9.56 71.98 0.69 -1.22 16 22 C -0.21 -5.00 10.08 22.45 0.23 -4.77 16 23 C 0.13 3.34 11.17 84.60 0.95 4.28 16 24 N -0.54 -18.18 10.27 -184.13 -1.89 -20.08 16 25 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.03 1.40 8.14 -2.39 -0.02 1.39 16 27 H 0.05 2.07 7.91 -2.39 -0.02 2.05 16 28 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 3.47 5.94 -2.39 -0.01 3.46 16 30 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 31 H 0.33 14.94 8.42 -89.70 -0.76 14.19 16 32 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 2.99 7.82 -2.39 -0.02 2.97 16 34 H 0.15 3.96 5.90 -2.91 -0.02 3.94 16 35 H 0.07 1.46 5.99 -2.39 -0.01 1.44 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.05 0.94 7.51 -2.39 -0.02 0.92 16 38 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 40 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 43 H 0.19 3.44 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -62.80 351.46 2.17 -60.62 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.23 Total: 26.00 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: 5.34 Total: -20.85 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -4.53 Total: -103.74 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.89 Total: -8.14 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -62.80 2.17 -60.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594008319.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.725 kcal (2) G-P(sol) polarization free energy of solvation -62.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds