Wall clock time and date at job start Tue Mar 31 2020 01:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50699 * 120.00256 * 2 1 4 4 N 1.46501 * 109.47064 * 124.99963 * 3 2 1 5 5 C 1.46764 * 124.34779 * 270.02412 * 4 3 2 6 6 C 1.54480 * 105.47196 * 162.98844 * 5 4 3 7 7 C 1.54626 * 101.76660 * 25.41491 * 6 5 4 8 8 H 1.08998 * 110.60138 * 216.47490 * 7 6 5 9 9 N 1.46894 * 110.48938 * 93.88046 * 7 6 5 10 10 C 1.46851 * 111.00134 * 59.81980 * 9 7 6 11 11 C 1.53031 * 109.52813 * 174.16118 * 10 9 7 12 12 C 1.53120 * 109.27587 * 59.17925 * 11 10 9 13 13 C 1.53121 * 109.16441 * 302.34475 * 12 11 10 14 14 H 1.09001 * 109.50300 * 297.68056 * 13 12 11 15 15 C 1.50698 * 109.50630 * 177.59781 * 13 12 11 16 16 H 1.07994 * 119.99644 * 275.20176 * 15 13 12 17 17 C 1.37872 * 119.99666 * 95.20208 * 15 13 12 18 18 N 1.31522 * 119.99493 * 185.50988 * 17 15 13 19 19 Si 1.86797 * 120.00670 * 5.51283 * 17 15 13 20 20 H 1.48497 * 109.47141 * 84.77856 * 19 17 15 21 21 H 1.48499 * 109.47292 * 204.78184 * 19 17 15 22 22 H 1.48505 * 109.46584 * 324.78158 * 19 17 15 23 23 C 1.46848 * 111.00064 * 295.60906 * 9 7 6 24 24 C 1.34417 * 124.34855 * 90.03101 * 4 3 2 25 25 O 1.21280 * 124.94341 * 0.66100 * 24 4 3 26 26 H 1.08010 * 119.99939 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.00242 * 0.02562 * 1 2 3 28 28 H 1.08005 * 119.99915 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46491 * 4.99891 * 3 2 1 30 30 H 1.09002 * 109.46682 * 244.99842 * 3 2 1 31 31 H 1.08992 * 110.24857 * 43.98508 * 5 4 3 32 32 H 1.09002 * 110.24368 * 281.98686 * 5 4 3 33 33 H 1.09002 * 110.96830 * 267.29516 * 6 5 4 34 34 H 1.08994 * 110.97134 * 143.53587 * 6 5 4 35 35 H 1.09003 * 109.45879 * 294.17824 * 10 9 7 36 36 H 1.08998 * 109.46177 * 54.15359 * 10 9 7 37 37 H 1.08997 * 109.50273 * 179.11561 * 11 10 9 38 38 H 1.09001 * 109.50336 * 299.24157 * 11 10 9 39 39 H 1.09002 * 109.52508 * 62.25393 * 12 11 10 40 40 H 1.08999 * 109.52176 * 182.37848 * 12 11 10 41 41 H 0.97002 * 120.00144 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.46440 * 305.85292 * 23 9 7 43 43 H 1.09002 * 109.46187 * 65.82276 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.6598 1.8428 2.4661 6 6 3.7493 1.2816 3.4067 7 6 4.9269 1.0614 2.4291 8 1 5.4838 0.1632 2.6958 9 7 5.8145 2.2319 2.4213 10 6 6.3660 2.4831 3.7590 11 6 7.3940 3.6142 3.6843 12 6 6.7173 4.8775 3.1453 13 6 6.1095 4.5756 1.7727 14 1 6.9018 4.3012 1.0762 15 6 5.3905 5.7972 1.2610 16 1 4.3701 5.9875 1.5591 17 6 6.0355 6.6717 0.4124 18 7 5.4481 7.7919 0.0522 19 14 7.7434 6.2655 -0.2258 20 1 7.6301 5.3998 -1.4270 21 1 8.4491 7.5216 -0.5856 22 1 8.5088 5.5522 0.8281 23 6 5.1186 3.4165 1.9028 24 6 4.2628 0.8916 1.0805 25 8 4.7989 0.4301 0.0954 26 1 -0.5400 -0.9354 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3585 2.1316 0.0896 30 1 2.6213 1.4024 -0.9314 31 1 1.6767 1.4851 2.7719 32 1 2.6833 2.9325 2.4695 33 1 3.4315 0.3394 3.8532 34 1 4.0117 2.0074 4.1763 35 1 5.5607 2.7683 4.4360 36 1 6.8481 1.5782 4.1288 37 1 7.7916 3.8109 4.6799 38 1 8.2065 3.3241 3.0180 39 1 5.9302 5.1902 3.8314 40 1 7.4554 5.6739 3.0505 41 1 5.9016 8.4071 -0.5452 42 1 4.6947 3.1896 0.9246 43 1 4.3193 3.6974 2.5886 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595623961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:55 Heat of formation + Delta-G solvation = -3.789918 kcal Electronic energy + Delta-G solvation = -23029.350028 eV Core-core repulsion = 19881.974527 eV Total energy + Delta-G solvation = -3147.375501 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.88778 -38.00144 -36.25333 -34.99586 -33.27978 -32.06412 -30.32130 -30.02564 -27.14873 -26.12749 -24.99422 -23.13387 -21.93444 -20.76180 -20.32163 -19.09343 -18.67775 -17.07138 -16.69839 -16.54661 -15.41383 -15.12822 -14.79107 -14.50587 -14.13144 -13.78228 -13.46655 -13.28581 -13.06524 -12.88432 -12.67834 -12.50744 -12.37837 -12.13049 -12.00614 -11.51652 -11.44754 -11.27208 -11.03123 -10.99129 -10.66845 -10.18124 -9.87565 -9.71512 -9.58358 -9.44293 -9.30707 -8.95431 -8.65018 -8.48946 -7.84917 -6.07646 -4.07070 1.99711 2.72025 3.22201 3.35172 3.42310 3.47189 4.26355 4.43753 4.45972 4.59604 4.78146 4.88408 4.99371 5.06434 5.22895 5.35054 5.40828 5.48343 5.50601 5.61173 5.65577 5.70038 5.75145 5.84389 5.96169 6.00996 6.14410 6.28282 6.35716 6.38230 6.42319 6.46144 6.64508 6.71446 6.80095 6.87725 7.20262 7.26125 7.41831 7.49417 7.55905 7.83898 8.37066 8.51481 8.95732 9.56753 11.05321 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017171 B = 0.006151 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.279533 B = 4550.820278 C = 5367.748214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.164 4.164 3 C 0.151 3.849 4 N -0.615 5.615 5 C 0.101 3.899 6 C -0.171 4.171 7 C 0.056 3.944 8 H 0.109 0.891 9 N -0.519 5.519 10 C 0.062 3.938 11 C -0.121 4.121 12 C -0.112 4.112 13 C 0.020 3.980 14 H 0.039 0.961 15 C -0.512 4.512 16 H 0.070 0.930 17 C 0.074 3.926 18 N -0.901 5.901 19 Si 0.877 3.123 20 H -0.275 1.275 21 H -0.291 1.291 22 H -0.263 1.263 23 C 0.066 3.934 24 C 0.532 3.468 25 O -0.520 6.520 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.034 0.966 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.263 0.737 42 H 0.066 0.934 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.488 -14.055 7.526 17.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.184 4.184 3 C 0.029 3.971 4 N -0.349 5.349 5 C -0.022 4.022 6 C -0.210 4.210 7 C -0.057 4.057 8 H 0.126 0.874 9 N -0.244 5.244 10 C -0.065 4.065 11 C -0.159 4.159 12 C -0.150 4.150 13 C 0.000 4.000 14 H 0.057 0.943 15 C -0.550 4.550 16 H 0.088 0.912 17 C -0.128 4.128 18 N -0.539 5.539 19 Si 0.704 3.296 20 H -0.201 1.201 21 H -0.218 1.218 22 H -0.187 1.187 23 C -0.060 4.060 24 C 0.318 3.682 25 O -0.394 6.394 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.126 0.874 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.821 -14.217 6.492 16.678 hybrid contribution 0.049 0.082 0.139 0.168 sum -5.772 -14.135 6.631 16.646 Atomic orbital electron populations 1.23855 0.95658 1.01970 1.00751 1.23380 0.96128 0.99218 0.99638 1.20463 0.91843 0.95103 0.89646 1.48201 1.12586 1.62293 1.11833 1.22195 0.98698 0.99885 0.81420 1.23300 0.96239 1.02776 0.98725 1.22493 0.92851 0.97537 0.92776 0.87357 1.62236 1.33962 1.04209 1.24031 1.22066 0.97129 0.98621 0.88711 1.21693 0.98038 0.95973 1.00179 1.21872 0.98996 0.95085 0.99075 1.19166 0.94571 0.92818 0.93404 0.94260 1.20895 1.00781 1.05091 1.28209 0.91193 1.25024 0.97566 0.94550 0.95661 1.69911 1.38660 1.10034 1.35262 0.86859 0.85153 0.77523 0.80059 1.20119 1.21778 1.18720 1.22482 0.96269 0.88984 0.98304 1.20619 0.81351 0.76305 0.89887 1.90691 1.67575 1.44844 1.36318 0.88431 0.88320 0.87362 0.89655 0.88937 0.90788 0.90115 0.89958 0.88731 0.94761 0.91632 0.92612 0.91840 0.93175 0.92844 0.92683 0.91549 0.95019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 14.32 29.02 0.42 -1.25 16 2 C -0.16 -1.81 9.85 -36.03 -0.35 -2.17 16 3 C 0.15 1.94 6.37 -5.19 -0.03 1.90 16 4 N -0.61 -8.79 2.58 -173.78 -0.45 -9.24 16 5 C 0.10 1.20 6.47 -3.12 -0.02 1.18 16 6 C -0.17 -1.91 6.07 -25.10 -0.15 -2.06 16 7 C 0.06 0.82 3.30 -67.73 -0.22 0.60 16 8 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 9 N -0.52 -9.03 4.73 -226.70 -1.07 -10.11 16 10 C 0.06 0.92 5.06 -3.83 -0.02 0.90 16 11 C -0.12 -2.01 6.09 -26.65 -0.16 -2.17 16 12 C -0.11 -2.29 5.27 -26.61 -0.14 -2.43 16 13 C 0.02 0.46 1.94 -91.69 -0.18 0.28 16 14 H 0.04 0.99 5.27 -51.93 -0.27 0.72 16 15 C -0.51 -14.07 8.86 -34.44 -0.31 -14.38 16 16 H 0.07 2.07 8.06 -52.49 -0.42 1.64 16 17 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 18 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 19 Si 0.88 22.12 27.01 -169.99 -4.59 17.53 16 20 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.26 -6.37 6.80 56.52 0.38 -5.98 16 23 C 0.07 1.33 3.36 -3.83 -0.01 1.32 16 24 C 0.53 9.10 5.92 -10.86 -0.06 9.04 16 25 O -0.52 -10.88 17.59 5.56 0.10 -10.79 16 26 H 0.10 0.75 8.06 -52.48 -0.42 0.33 16 27 H 0.10 0.80 7.84 -52.49 -0.41 0.39 16 28 H 0.11 1.27 8.06 -52.48 -0.42 0.84 16 29 H 0.09 0.96 7.79 -51.93 -0.40 0.55 16 30 H 0.09 1.34 7.92 -51.93 -0.41 0.93 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.07 6.29 -51.93 -0.33 0.75 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.04 5.80 -51.93 -0.30 0.74 16 35 H 0.03 0.47 6.22 -51.93 -0.32 0.15 16 36 H 0.07 0.84 8.12 -51.93 -0.42 0.41 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.07 1.47 6.44 -51.93 -0.33 1.14 16 43 H 0.03 0.60 5.74 -51.93 -0.30 0.31 16 LS Contribution 332.13 15.07 5.01 5.01 Total: -1.00 -32.28 332.13 -8.47 -40.75 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.89 Total: 0.64 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.35 Total: -7.21 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.75 Total: -45.93 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.10 Total: -10.79 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.59 Total: 17.53 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.28 -8.47 -40.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.961 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds