Wall clock time and date at job start Tue Mar 31 2020 01:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50699 * 120.00256 * 2 1 4 4 N 1.46501 * 109.47064 * 124.99963 * 3 2 1 5 5 C 1.46764 * 124.34779 * 270.02412 * 4 3 2 6 6 C 1.54480 * 105.47196 * 162.98844 * 5 4 3 7 7 C 1.54626 * 101.76660 * 25.41491 * 6 5 4 8 8 H 1.08998 * 110.60138 * 216.47490 * 7 6 5 9 9 N 1.46894 * 110.48938 * 93.88046 * 7 6 5 10 10 C 1.46851 * 111.00134 * 59.81980 * 9 7 6 11 11 C 1.53031 * 109.52813 * 174.16118 * 10 9 7 12 12 C 1.53120 * 109.27587 * 59.17925 * 11 10 9 13 13 C 1.53121 * 109.16441 * 302.34475 * 12 11 10 14 14 H 1.09001 * 109.50300 * 297.68056 * 13 12 11 15 15 C 1.50698 * 109.50630 * 177.59781 * 13 12 11 16 16 H 1.07994 * 119.99644 * 275.20176 * 15 13 12 17 17 C 1.37872 * 119.99666 * 95.20208 * 15 13 12 18 18 N 1.31522 * 119.99493 * 185.50988 * 17 15 13 19 19 Si 1.86797 * 120.00670 * 5.51283 * 17 15 13 20 20 H 1.48497 * 109.47141 * 84.77856 * 19 17 15 21 21 H 1.48499 * 109.47292 * 204.78184 * 19 17 15 22 22 H 1.48505 * 109.46584 * 324.78158 * 19 17 15 23 23 C 1.46848 * 111.00064 * 295.60906 * 9 7 6 24 24 C 1.34417 * 124.34855 * 90.03101 * 4 3 2 25 25 O 1.21280 * 124.94341 * 0.66100 * 24 4 3 26 26 H 1.08010 * 119.99939 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.00242 * 0.02562 * 1 2 3 28 28 H 1.08005 * 119.99915 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46491 * 4.99891 * 3 2 1 30 30 H 1.09002 * 109.46682 * 244.99842 * 3 2 1 31 31 H 1.08992 * 110.24857 * 43.98508 * 5 4 3 32 32 H 1.09002 * 110.24368 * 281.98686 * 5 4 3 33 33 H 1.09002 * 110.96830 * 267.29516 * 6 5 4 34 34 H 1.08994 * 110.97134 * 143.53587 * 6 5 4 35 35 H 1.09003 * 109.45879 * 294.17824 * 10 9 7 36 36 H 1.08998 * 109.46177 * 54.15359 * 10 9 7 37 37 H 1.08997 * 109.50273 * 179.11561 * 11 10 9 38 38 H 1.09001 * 109.50336 * 299.24157 * 11 10 9 39 39 H 1.09002 * 109.52508 * 62.25393 * 12 11 10 40 40 H 1.08999 * 109.52176 * 182.37848 * 12 11 10 41 41 H 0.97002 * 120.00144 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.46440 * 305.85292 * 23 9 7 43 43 H 1.09002 * 109.46187 * 65.82276 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.6598 1.8428 2.4661 6 6 3.7493 1.2816 3.4067 7 6 4.9269 1.0614 2.4291 8 1 5.4838 0.1632 2.6958 9 7 5.8145 2.2319 2.4213 10 6 6.3660 2.4831 3.7590 11 6 7.3940 3.6142 3.6843 12 6 6.7173 4.8775 3.1453 13 6 6.1095 4.5756 1.7727 14 1 6.9018 4.3012 1.0762 15 6 5.3905 5.7972 1.2610 16 1 4.3701 5.9875 1.5591 17 6 6.0355 6.6717 0.4124 18 7 5.4481 7.7919 0.0522 19 14 7.7434 6.2655 -0.2258 20 1 7.6301 5.3998 -1.4270 21 1 8.4491 7.5216 -0.5856 22 1 8.5088 5.5522 0.8281 23 6 5.1186 3.4165 1.9028 24 6 4.2628 0.8916 1.0805 25 8 4.7989 0.4301 0.0954 26 1 -0.5400 -0.9354 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3585 2.1316 0.0896 30 1 2.6213 1.4024 -0.9314 31 1 1.6767 1.4851 2.7719 32 1 2.6833 2.9325 2.4695 33 1 3.4315 0.3394 3.8532 34 1 4.0117 2.0074 4.1763 35 1 5.5607 2.7683 4.4360 36 1 6.8481 1.5782 4.1288 37 1 7.7916 3.8109 4.6799 38 1 8.2065 3.3241 3.0180 39 1 5.9302 5.1902 3.8314 40 1 7.4554 5.6739 3.0505 41 1 5.9016 8.4071 -0.5452 42 1 4.6947 3.1896 0.9246 43 1 4.3193 3.6974 2.5886 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623961.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:54 Heat of formation + Delta-G solvation = -25.901231 kcal Electronic energy + Delta-G solvation = -23030.308847 eV Core-core repulsion = 19881.974527 eV Total energy + Delta-G solvation = -3148.334320 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.09712 -39.41530 -37.52579 -36.20391 -34.90600 -33.63076 -31.97544 -31.14504 -28.34674 -27.36537 -26.68236 -24.46307 -23.32737 -22.16847 -21.24550 -20.44757 -20.02164 -18.99526 -17.98333 -17.86277 -16.68083 -16.35775 -16.02550 -15.92527 -15.63919 -15.15761 -14.84263 -14.61391 -14.56591 -14.25447 -14.12496 -13.87123 -13.63373 -13.43203 -13.11249 -12.98598 -12.89968 -12.57632 -12.41955 -12.30643 -12.12949 -11.86313 -11.60500 -11.32832 -11.14431 -10.87395 -10.79194 -10.64559 -10.43038 -9.79389 -9.12714 -8.31688 -6.32737 1.16908 1.30174 1.33548 1.43442 1.43641 2.18061 2.32461 2.98985 3.10445 3.31367 3.55971 3.91815 3.92583 4.03495 4.07799 4.19480 4.21664 4.25502 4.41747 4.48030 4.54592 4.62820 4.65969 4.70992 4.78409 4.83564 4.96081 4.98309 5.05547 5.07121 5.10436 5.22531 5.28782 5.44690 5.58770 5.62654 5.63723 5.76480 5.77478 6.03650 6.10028 6.22509 6.34723 6.74078 7.12056 7.33169 8.84867 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017171 B = 0.006151 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.279533 B = 4550.820278 C = 5367.748214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.185 4.185 3 C 0.146 3.854 4 N -0.612 5.612 5 C 0.095 3.905 6 C -0.154 4.154 7 C 0.056 3.944 8 H 0.127 0.873 9 N -0.539 5.539 10 C 0.062 3.938 11 C -0.115 4.115 12 C -0.108 4.108 13 C 0.014 3.986 14 H 0.019 0.981 15 C -0.508 4.508 16 H 0.037 0.963 17 C 0.019 3.981 18 N -0.946 5.946 19 Si 0.932 3.068 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.247 1.247 23 C 0.086 3.914 24 C 0.516 3.484 25 O -0.574 6.574 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.055 0.945 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.035 0.965 41 H 0.265 0.735 42 H 0.034 0.966 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.836 -16.117 10.216 20.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.204 4.204 3 C 0.025 3.975 4 N -0.344 5.344 5 C -0.026 4.026 6 C -0.193 4.193 7 C -0.056 4.056 8 H 0.145 0.855 9 N -0.265 5.265 10 C -0.064 4.064 11 C -0.153 4.153 12 C -0.147 4.147 13 C -0.005 4.005 14 H 0.038 0.962 15 C -0.546 4.546 16 H 0.056 0.944 17 C -0.179 4.179 18 N -0.587 5.587 19 Si 0.758 3.242 20 H -0.208 1.208 21 H -0.211 1.211 22 H -0.170 1.170 23 C -0.041 4.041 24 C 0.304 3.696 25 O -0.453 6.453 26 H 0.135 0.865 27 H 0.129 0.871 28 H 0.116 0.884 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.124 0.876 32 H 0.081 0.919 33 H 0.134 0.866 34 H 0.123 0.877 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.195 -16.283 9.229 19.715 hybrid contribution -0.003 0.724 -0.705 1.011 sum -6.198 -15.559 8.524 18.792 Atomic orbital electron populations 1.24084 0.94715 1.03452 0.97003 1.23086 0.96707 0.97545 1.03071 1.20539 0.91688 0.97046 0.88253 1.48397 1.12109 1.60838 1.13092 1.22382 1.00895 0.98975 0.80383 1.23301 0.93768 1.04636 0.97641 1.22551 0.93961 0.96851 0.92211 0.85512 1.62079 1.34704 1.03518 1.26156 1.22188 0.97294 0.99412 0.87540 1.21658 0.97888 0.94293 1.01468 1.21714 0.98815 0.96913 0.97212 1.19165 0.94463 0.92232 0.94674 0.96250 1.21205 0.99557 1.06430 1.27418 0.94448 1.25757 1.01238 0.94524 0.96340 1.70032 1.40489 1.11349 1.36803 0.85957 0.81352 0.77410 0.79494 1.20759 1.21093 1.17027 1.22005 0.95484 0.89309 0.97335 1.21224 0.82184 0.75812 0.90385 1.90646 1.68829 1.47479 1.38321 0.86503 0.87096 0.88445 0.88218 0.91931 0.87568 0.91865 0.86562 0.87730 0.92744 0.88308 0.89157 0.92975 0.92816 0.94579 0.92650 0.94742 0.94095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 14.32 67.79 0.97 -1.43 16 2 C -0.18 -3.92 9.85 25.65 0.25 -3.67 16 3 C 0.15 3.82 6.37 85.63 0.55 4.36 16 4 N -0.61 -17.29 2.58 -822.32 -2.12 -19.41 16 5 C 0.10 2.06 6.47 86.83 0.56 2.62 16 6 C -0.15 -2.84 6.07 31.65 0.19 -2.65 16 7 C 0.06 1.51 3.30 44.91 0.15 1.66 16 8 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 9 N -0.54 -17.70 4.73 -871.16 -4.12 -21.82 16 10 C 0.06 1.59 5.06 86.32 0.44 2.03 16 11 C -0.12 -3.45 6.09 30.64 0.19 -3.27 16 12 C -0.11 -4.29 5.27 30.68 0.16 -4.13 16 13 C 0.01 0.66 1.94 -11.49 -0.02 0.64 16 14 H 0.02 0.98 5.27 -2.39 -0.01 0.97 16 15 C -0.51 -28.86 8.86 25.60 0.23 -28.64 16 16 H 0.04 2.31 8.06 -2.91 -0.02 2.29 16 17 C 0.02 1.10 5.47 84.65 0.46 1.57 16 18 N -0.95 -59.53 13.96 21.45 0.30 -59.23 16 19 Si 0.93 46.76 27.01 68.60 1.85 48.61 16 20 H -0.28 -14.28 7.11 99.48 0.71 -13.57 16 21 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.25 -11.60 6.80 99.48 0.68 -10.92 16 23 C 0.09 3.46 3.36 86.33 0.29 3.75 16 24 C 0.52 17.70 5.92 87.90 0.52 18.22 16 25 O -0.57 -25.00 17.59 -3.03 -0.05 -25.06 16 26 H 0.12 1.41 8.06 -2.91 -0.02 1.38 16 27 H 0.11 1.47 7.84 -2.91 -0.02 1.45 16 28 H 0.10 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.10 2.23 7.79 -2.39 -0.02 2.21 16 30 H 0.06 1.97 7.92 -2.39 -0.02 1.95 16 31 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.60 6.29 -2.39 -0.02 1.59 16 33 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.10 1.78 5.80 -2.39 -0.01 1.77 16 35 H 0.05 1.21 6.22 -2.39 -0.01 1.20 16 36 H 0.10 1.97 8.12 -2.39 -0.02 1.95 16 37 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 42 H 0.03 1.58 6.44 -2.39 -0.02 1.56 16 43 H 0.04 1.54 5.74 -2.39 -0.01 1.52 16 Total: -1.00 -74.90 332.13 1.74 -73.17 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.95 Total: 12.68 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: 4.93 Total: -8.94 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -5.95 Total: -100.46 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.05 Total: -25.06 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 1.85 Total: 48.61 kcal Total: -74.90 1.74 -73.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623961.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.265 kcal (2) G-P(sol) polarization free energy of solvation -74.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds