Wall clock time and date at job start Tue Mar 31 2020 01:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50700 * 119.99879 * 2 1 4 4 N 1.46500 * 109.47016 * 124.99621 * 3 2 1 5 5 C 1.46760 * 124.35018 * 270.00239 * 4 3 2 6 6 C 1.54835 * 105.49049 * 197.06033 * 5 4 3 7 7 C 1.54625 * 101.60561 * 334.56090 * 6 5 4 8 8 H 1.09007 * 110.48645 * 143.56923 * 7 6 5 9 9 N 1.46898 * 110.49144 * 266.08188 * 7 6 5 10 10 C 1.46852 * 110.99441 * 53.95188 * 9 7 6 11 11 C 1.53041 * 109.52177 * 185.83916 * 10 9 7 12 12 C 1.53206 * 109.29832 * 300.82357 * 11 10 9 13 13 C 1.53114 * 109.11920 * 57.62704 * 12 11 10 14 14 H 1.09002 * 109.50377 * 62.32749 * 13 12 11 15 15 C 1.50698 * 109.50243 * 182.40441 * 13 12 11 16 16 H 1.08000 * 120.00268 * 119.92152 * 15 13 12 17 17 C 1.37878 * 120.00241 * 299.92394 * 15 13 12 18 18 N 1.31509 * 120.00050 * 179.97438 * 17 15 13 19 19 Si 1.86800 * 119.99691 * 359.97438 * 17 15 13 20 20 H 1.48496 * 109.46867 * 90.00425 * 19 17 15 21 21 H 1.48499 * 109.47224 * 210.00354 * 19 17 15 22 22 H 1.48500 * 109.47506 * 330.00357 * 19 17 15 23 23 C 1.46845 * 111.00251 * 178.15904 * 9 7 6 24 24 C 1.34426 * 124.34885 * 90.02154 * 4 3 2 25 25 O 1.21279 * 124.94021 * 359.54066 * 24 4 3 26 26 H 1.07999 * 119.99954 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00132 * 179.97438 * 1 2 3 28 28 H 1.08003 * 119.99807 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.46904 * 4.99695 * 3 2 1 30 30 H 1.09000 * 109.46722 * 244.99708 * 3 2 1 31 31 H 1.09000 * 110.24704 * 316.03243 * 5 4 3 32 32 H 1.08998 * 110.24965 * 77.95019 * 5 4 3 33 33 H 1.09002 * 111.07561 * 216.48810 * 6 5 4 34 34 H 1.09002 * 111.01853 * 92.61706 * 6 5 4 35 35 H 1.08998 * 109.45960 * 305.85092 * 10 9 7 36 36 H 1.08997 * 109.46631 * 65.82413 * 10 9 7 37 37 H 1.09006 * 109.50367 * 60.75766 * 11 10 9 38 38 H 1.08992 * 109.50410 * 180.87573 * 11 10 9 39 39 H 1.09006 * 109.51006 * 297.75188 * 12 11 10 40 40 H 1.09002 * 109.57569 * 177.54402 * 12 11 10 41 41 H 0.97005 * 119.99889 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.46233 * 54.14392 * 23 9 7 43 43 H 1.09007 * 109.45067 * 294.17282 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.6599 1.8433 2.4660 6 6 4.0185 2.0786 3.1704 7 6 4.9332 1.0804 2.4236 8 1 5.9314 1.4995 2.2961 9 7 5.0014 -0.1957 3.1481 10 6 3.6570 -0.7304 3.3996 11 6 3.7595 -1.9790 4.2786 12 6 4.6220 -3.0280 3.5694 13 6 6.0001 -2.4288 3.2757 14 1 6.4931 -2.1730 4.2135 15 6 6.8360 -3.4335 2.5254 16 1 7.2118 -3.1959 1.5412 17 6 7.1211 -4.6561 3.0955 18 7 7.8501 -5.5330 2.4406 19 14 6.4716 -5.0668 4.7981 20 1 5.1400 -5.7128 4.6774 21 1 7.4122 -5.9947 5.4762 22 1 6.3464 -3.8197 5.5944 23 6 5.8326 -1.1671 2.4258 24 6 4.2628 0.8916 1.0807 25 8 4.7930 0.4123 0.1009 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8501 -0.9354 0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6214 1.4025 -0.9314 31 1 2.1107 2.7813 2.3840 32 1 2.0709 1.1087 3.0150 33 1 3.9578 1.8337 4.2309 34 1 4.3607 3.1036 3.0274 35 1 3.0558 0.0233 3.9081 36 1 3.1866 -0.9912 2.4517 37 1 4.2174 -1.7162 5.2323 38 1 2.7629 -2.3846 4.4523 39 1 4.1446 -3.3197 2.6339 40 1 4.7341 -3.9025 4.2103 41 1 8.0510 -6.3930 2.8418 42 1 6.8114 -0.7307 2.2268 43 1 5.3518 -1.4259 1.4824 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595623962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:58 Heat of formation + Delta-G solvation = 3.284023 kcal Electronic energy + Delta-G solvation = -23160.448494 eV Core-core repulsion = 20013.379742 eV Total energy + Delta-G solvation = -3147.068752 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.00895 -37.85904 -36.47504 -35.14890 -33.26302 -32.07287 -30.55004 -30.03732 -27.12079 -26.23336 -24.90074 -23.12086 -21.82905 -21.14552 -20.26430 -19.32852 -18.60041 -17.17375 -16.78039 -16.48589 -15.74237 -15.06069 -14.91687 -14.52051 -14.05328 -13.86438 -13.53869 -13.41856 -13.25463 -12.99570 -12.63977 -12.49947 -12.34685 -12.20220 -12.17891 -11.65230 -11.39568 -11.12931 -11.02739 -10.93388 -10.49481 -10.06288 -10.04783 -9.92528 -9.71098 -9.60083 -9.10899 -8.89942 -8.74146 -8.46768 -7.86362 -6.00972 -3.99724 1.94809 2.65924 3.09067 3.31001 3.41824 3.45116 4.14080 4.38619 4.45240 4.46601 4.69204 4.85326 4.88764 4.94941 5.24260 5.24917 5.29102 5.37707 5.43027 5.47476 5.59874 5.73878 5.75265 5.79444 5.88211 6.00505 6.17179 6.27473 6.29283 6.32804 6.42025 6.49591 6.61113 6.67324 6.78704 6.83416 7.07648 7.21488 7.34421 7.47442 7.67217 7.87920 8.25218 8.59488 9.04069 9.61276 11.12486 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022268 B = 0.005365 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.111572 B = 5217.775660 C = 5331.432348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.168 4.168 3 C 0.153 3.847 4 N -0.619 5.619 5 C 0.097 3.903 6 C -0.128 4.128 7 C 0.054 3.946 8 H 0.115 0.885 9 N -0.510 5.510 10 C 0.051 3.949 11 C -0.119 4.119 12 C -0.123 4.123 13 C 0.022 3.978 14 H 0.036 0.964 15 C -0.511 4.511 16 H 0.073 0.927 17 C 0.070 3.930 18 N -0.902 5.902 19 Si 0.888 3.112 20 H -0.281 1.281 21 H -0.298 1.298 22 H -0.263 1.263 23 C 0.072 3.928 24 C 0.488 3.512 25 O -0.517 6.517 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.030 0.970 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.047 0.953 41 H 0.263 0.737 42 H 0.070 0.930 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.093 17.040 1.782 22.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.187 4.187 3 C 0.031 3.969 4 N -0.354 5.354 5 C -0.025 4.025 6 C -0.166 4.166 7 C -0.059 4.059 8 H 0.132 0.868 9 N -0.235 5.235 10 C -0.077 4.077 11 C -0.157 4.157 12 C -0.161 4.161 13 C 0.002 3.998 14 H 0.054 0.946 15 C -0.550 4.550 16 H 0.091 0.909 17 C -0.131 4.131 18 N -0.541 5.541 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.226 1.226 22 H -0.188 1.188 23 C -0.055 4.055 24 C 0.274 3.726 25 O -0.390 6.390 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.129 0.871 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -14.518 16.697 1.640 22.187 hybrid contribution -0.884 -0.701 0.006 1.128 sum -15.402 15.997 1.646 22.267 Atomic orbital electron populations 1.23830 0.95579 1.01919 1.00736 1.23417 0.96237 0.99414 0.99610 1.20436 0.91678 0.95154 0.89621 1.48384 1.12513 1.63058 1.11488 1.22340 0.98009 0.99247 0.82953 1.22774 0.93311 0.99278 1.01254 1.22639 1.00463 0.93489 0.89270 0.86762 1.62486 1.12876 1.03111 1.45012 1.22306 0.89841 0.96922 0.98635 1.21672 0.99439 0.95322 0.99247 1.22056 0.98157 0.96772 0.99099 1.19163 0.92257 0.91999 0.96337 0.94627 1.21007 1.31132 0.98615 1.04235 0.90861 1.24982 0.94683 0.96144 0.97311 1.69907 1.38684 1.07443 1.38042 0.86832 0.77672 0.78290 0.85375 1.20834 1.22623 1.18804 1.22210 0.95788 0.92005 0.95468 1.22193 0.82187 0.77017 0.91223 1.90741 1.68299 1.43044 1.36941 0.88567 0.88241 0.87076 0.90152 0.89312 0.90673 0.90796 0.88020 0.89553 0.90995 0.95205 0.91616 0.92755 0.92689 0.93442 0.92748 0.91147 0.94220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 14.32 29.01 0.42 -1.24 16 2 C -0.17 -1.90 9.85 -36.03 -0.35 -2.26 16 3 C 0.15 1.64 6.37 -5.19 -0.03 1.61 16 4 N -0.62 -7.55 2.76 -173.57 -0.48 -8.03 16 5 C 0.10 0.88 6.47 -2.93 -0.02 0.86 16 6 C -0.13 -1.20 6.23 -24.91 -0.16 -1.36 16 7 C 0.05 0.76 3.25 -67.73 -0.22 0.54 16 8 H 0.11 1.60 8.14 -51.92 -0.42 1.18 16 9 N -0.51 -8.71 4.69 -226.71 -1.06 -9.77 16 10 C 0.05 0.79 3.94 -3.83 -0.02 0.78 16 11 C -0.12 -2.07 6.09 -26.60 -0.16 -2.24 16 12 C -0.12 -2.73 4.74 -26.57 -0.13 -2.86 16 13 C 0.02 0.53 1.85 -91.69 -0.17 0.36 16 14 H 0.04 0.89 7.20 -51.93 -0.37 0.52 16 15 C -0.51 -14.85 9.14 -34.44 -0.31 -15.16 16 16 H 0.07 2.33 7.99 -52.49 -0.42 1.91 16 17 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 18 N -0.90 -28.34 13.96 55.43 0.77 -27.56 16 19 Si 0.89 22.45 24.35 -169.99 -4.14 18.31 16 20 H -0.28 -6.93 6.89 56.52 0.39 -6.54 16 21 H -0.30 -7.56 7.11 56.52 0.40 -7.15 16 22 H -0.26 -6.35 6.53 56.52 0.37 -5.98 16 23 C 0.07 1.55 4.22 -3.84 -0.02 1.53 16 24 C 0.49 7.82 5.80 -10.86 -0.06 7.75 16 25 O -0.52 -10.60 16.37 5.56 0.09 -10.51 16 26 H 0.10 0.68 7.84 -52.49 -0.41 0.27 16 27 H 0.10 0.86 8.06 -52.49 -0.42 0.43 16 28 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 29 H 0.08 0.62 7.79 -51.93 -0.40 0.22 16 30 H 0.09 1.05 7.93 -51.93 -0.41 0.64 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.67 6.12 -51.93 -0.32 0.35 16 33 H 0.10 0.90 7.44 -51.93 -0.39 0.52 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.89 4.70 -51.93 -0.24 0.65 16 36 H 0.03 0.51 7.28 -51.93 -0.38 0.13 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.05 1.10 3.35 -51.93 -0.17 0.93 16 41 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 42 H 0.07 1.55 8.12 -51.93 -0.42 1.13 16 43 H 0.04 0.95 6.71 -51.93 -0.35 0.60 16 LS Contribution 326.12 15.07 4.91 4.91 Total: -1.00 -33.72 326.12 -8.09 -41.81 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.85 Total: 0.56 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -1.33 Total: -9.71 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.77 Total: -45.37 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.14 Total: 18.31 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.72 -8.09 -41.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.095 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds