Wall clock time and date at job start Tue Mar 31 2020 01:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50700 * 119.99879 * 2 1 4 4 N 1.46500 * 109.47016 * 124.99621 * 3 2 1 5 5 C 1.46760 * 124.35018 * 270.00239 * 4 3 2 6 6 C 1.54835 * 105.49049 * 197.06033 * 5 4 3 7 7 C 1.54625 * 101.60561 * 334.56090 * 6 5 4 8 8 H 1.09007 * 110.48645 * 143.56923 * 7 6 5 9 9 N 1.46898 * 110.49144 * 266.08188 * 7 6 5 10 10 C 1.46852 * 110.99441 * 53.95188 * 9 7 6 11 11 C 1.53041 * 109.52177 * 185.83916 * 10 9 7 12 12 C 1.53206 * 109.29832 * 300.82357 * 11 10 9 13 13 C 1.53114 * 109.11920 * 57.62704 * 12 11 10 14 14 H 1.09002 * 109.50377 * 62.32749 * 13 12 11 15 15 C 1.50698 * 109.50243 * 182.40441 * 13 12 11 16 16 H 1.08000 * 120.00268 * 119.92152 * 15 13 12 17 17 C 1.37878 * 120.00241 * 299.92394 * 15 13 12 18 18 N 1.31509 * 120.00050 * 179.97438 * 17 15 13 19 19 Si 1.86800 * 119.99691 * 359.97438 * 17 15 13 20 20 H 1.48496 * 109.46867 * 90.00425 * 19 17 15 21 21 H 1.48499 * 109.47224 * 210.00354 * 19 17 15 22 22 H 1.48500 * 109.47506 * 330.00357 * 19 17 15 23 23 C 1.46845 * 111.00251 * 178.15904 * 9 7 6 24 24 C 1.34426 * 124.34885 * 90.02154 * 4 3 2 25 25 O 1.21279 * 124.94021 * 359.54066 * 24 4 3 26 26 H 1.07999 * 119.99954 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00132 * 179.97438 * 1 2 3 28 28 H 1.08003 * 119.99807 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.46904 * 4.99695 * 3 2 1 30 30 H 1.09000 * 109.46722 * 244.99708 * 3 2 1 31 31 H 1.09000 * 110.24704 * 316.03243 * 5 4 3 32 32 H 1.08998 * 110.24965 * 77.95019 * 5 4 3 33 33 H 1.09002 * 111.07561 * 216.48810 * 6 5 4 34 34 H 1.09002 * 111.01853 * 92.61706 * 6 5 4 35 35 H 1.08998 * 109.45960 * 305.85092 * 10 9 7 36 36 H 1.08997 * 109.46631 * 65.82413 * 10 9 7 37 37 H 1.09006 * 109.50367 * 60.75766 * 11 10 9 38 38 H 1.08992 * 109.50410 * 180.87573 * 11 10 9 39 39 H 1.09006 * 109.51006 * 297.75188 * 12 11 10 40 40 H 1.09002 * 109.57569 * 177.54402 * 12 11 10 41 41 H 0.97005 * 119.99889 * 179.97438 * 18 17 15 42 42 H 1.08994 * 109.46233 * 54.14392 * 23 9 7 43 43 H 1.09007 * 109.45067 * 294.17282 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.6599 1.8433 2.4660 6 6 4.0185 2.0786 3.1704 7 6 4.9332 1.0804 2.4236 8 1 5.9314 1.4995 2.2961 9 7 5.0014 -0.1957 3.1481 10 6 3.6570 -0.7304 3.3996 11 6 3.7595 -1.9790 4.2786 12 6 4.6220 -3.0280 3.5694 13 6 6.0001 -2.4288 3.2757 14 1 6.4931 -2.1730 4.2135 15 6 6.8360 -3.4335 2.5254 16 1 7.2118 -3.1959 1.5412 17 6 7.1211 -4.6561 3.0955 18 7 7.8501 -5.5330 2.4406 19 14 6.4716 -5.0668 4.7981 20 1 5.1400 -5.7128 4.6774 21 1 7.4122 -5.9947 5.4762 22 1 6.3464 -3.8197 5.5944 23 6 5.8326 -1.1671 2.4258 24 6 4.2628 0.8916 1.0807 25 8 4.7930 0.4123 0.1009 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8501 -0.9354 0.0004 29 1 1.3586 2.1316 0.0895 30 1 2.6214 1.4025 -0.9314 31 1 2.1107 2.7813 2.3840 32 1 2.0709 1.1087 3.0150 33 1 3.9578 1.8337 4.2309 34 1 4.3607 3.1036 3.0274 35 1 3.0558 0.0233 3.9081 36 1 3.1866 -0.9912 2.4517 37 1 4.2174 -1.7162 5.2323 38 1 2.7629 -2.3846 4.4523 39 1 4.1446 -3.3197 2.6339 40 1 4.7341 -3.9025 4.2103 41 1 8.0510 -6.3930 2.8418 42 1 6.8114 -0.7307 2.2268 43 1 5.3518 -1.4259 1.4824 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:57 Heat of formation + Delta-G solvation = -22.000242 kcal Electronic energy + Delta-G solvation = -23161.544902 eV Core-core repulsion = 20013.379742 eV Total energy + Delta-G solvation = -3148.165160 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.15062 -39.34436 -37.67733 -36.30044 -34.89764 -33.70900 -32.11968 -31.31140 -28.23187 -27.14673 -26.90329 -24.55975 -23.26344 -22.24539 -21.40295 -20.63570 -19.98515 -18.91167 -18.16035 -17.74228 -16.80447 -16.71687 -16.11822 -15.90111 -15.48337 -15.27655 -14.87082 -14.79672 -14.52882 -14.34298 -14.21887 -13.97246 -13.70200 -13.34610 -13.12176 -12.94552 -12.76471 -12.52932 -12.34764 -12.11483 -12.01121 -11.87221 -11.75886 -11.56405 -11.22356 -11.06319 -10.83912 -10.65305 -10.49291 -9.73531 -9.30100 -8.32932 -6.38229 1.13634 1.28103 1.34845 1.45045 1.47232 2.18163 2.31185 2.84515 3.01999 3.42876 3.51860 3.91186 3.94853 3.99940 4.04696 4.07513 4.14627 4.26853 4.40776 4.44105 4.48369 4.62881 4.64847 4.68795 4.74120 4.76022 4.85899 4.92364 4.96802 5.07766 5.11926 5.18894 5.20653 5.38159 5.45147 5.57579 5.62225 5.67156 5.76526 5.97615 6.02858 6.12357 6.29081 6.68533 7.10552 7.26856 8.84884 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022268 B = 0.005365 C = 0.005251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.111572 B = 5217.775660 C = 5331.432348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.200 4.200 3 C 0.152 3.848 4 N -0.609 5.609 5 C 0.091 3.909 6 C -0.112 4.112 7 C 0.044 3.956 8 H 0.107 0.893 9 N -0.504 5.504 10 C 0.052 3.948 11 C -0.114 4.114 12 C -0.123 4.123 13 C 0.024 3.976 14 H 0.037 0.963 15 C -0.526 4.526 16 H 0.018 0.982 17 C 0.009 3.991 18 N -0.953 5.953 19 Si 0.959 3.041 20 H -0.267 1.267 21 H -0.296 1.296 22 H -0.237 1.237 23 C 0.089 3.911 24 C 0.475 3.525 25 O -0.583 6.583 26 H 0.130 0.870 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.126 0.874 30 H 0.065 0.935 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.010 0.990 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.032 0.968 40 H 0.041 0.959 41 H 0.267 0.733 42 H 0.050 0.950 43 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.128 19.968 5.342 28.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.219 4.219 3 C 0.031 3.969 4 N -0.342 5.342 5 C -0.030 4.030 6 C -0.149 4.149 7 C -0.068 4.068 8 H 0.125 0.875 9 N -0.228 5.228 10 C -0.075 4.075 11 C -0.151 4.151 12 C -0.161 4.161 13 C 0.005 3.995 14 H 0.055 0.945 15 C -0.565 4.565 16 H 0.037 0.963 17 C -0.187 4.187 18 N -0.594 5.594 19 Si 0.785 3.215 20 H -0.193 1.193 21 H -0.224 1.224 22 H -0.161 1.161 23 C -0.039 4.039 24 C 0.261 3.739 25 O -0.462 6.462 26 H 0.148 0.852 27 H 0.120 0.880 28 H 0.085 0.915 29 H 0.143 0.857 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.101 0.899 33 H 0.138 0.862 34 H 0.133 0.867 35 H 0.140 0.860 36 H 0.029 0.971 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.051 0.949 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -18.614 19.680 5.225 27.588 hybrid contribution 0.347 -1.581 -1.272 2.059 sum -18.268 18.099 3.953 26.017 Atomic orbital electron populations 1.24069 0.94400 1.03603 0.96512 1.23171 0.97120 0.98033 1.03620 1.20579 0.91691 0.96298 0.88325 1.48525 1.11261 1.61125 1.13330 1.22694 0.98167 1.01349 0.80781 1.22860 0.91732 0.98946 1.01399 1.22838 1.01677 0.93074 0.89243 0.87515 1.62437 1.13341 1.02860 1.44138 1.22439 0.89207 0.97803 0.98009 1.21680 1.00065 0.94217 0.99158 1.21940 0.97320 0.98129 0.98676 1.19058 0.92964 0.91849 0.95670 0.94503 1.21321 1.32008 1.00471 1.02672 0.96349 1.25975 0.94752 0.95645 1.02361 1.70078 1.40537 1.08200 1.40554 0.85678 0.77380 0.79036 0.79401 1.19271 1.22357 1.16077 1.21750 0.95712 0.92443 0.93948 1.22563 0.83714 0.76563 0.91049 1.90701 1.70098 1.46126 1.39263 0.85221 0.87986 0.91481 0.85655 0.91709 0.86376 0.89903 0.86184 0.86713 0.86005 0.97139 0.90182 0.89542 0.94905 0.94081 0.92460 0.93100 0.97906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 14.32 67.77 0.97 -1.25 16 2 C -0.20 -4.41 9.85 25.64 0.25 -4.16 16 3 C 0.15 3.02 6.37 85.63 0.55 3.57 16 4 N -0.61 -13.72 2.76 -821.63 -2.27 -15.99 16 5 C 0.09 1.16 6.47 86.96 0.56 1.72 16 6 C -0.11 -1.56 6.23 31.77 0.20 -1.36 16 7 C 0.04 1.20 3.25 44.91 0.15 1.34 16 8 H 0.11 3.03 8.14 -2.38 -0.02 3.01 16 9 N -0.50 -16.77 4.69 -871.16 -4.08 -20.85 16 10 C 0.05 1.50 3.94 86.33 0.34 1.84 16 11 C -0.11 -3.57 6.09 30.68 0.19 -3.38 16 12 C -0.12 -5.40 4.74 30.70 0.15 -5.25 16 13 C 0.02 1.19 1.85 -11.49 -0.02 1.17 16 14 H 0.04 1.84 7.20 -2.39 -0.02 1.82 16 15 C -0.53 -32.70 9.14 25.60 0.23 -32.47 16 16 H 0.02 1.29 7.99 -2.91 -0.02 1.26 16 17 C 0.01 0.56 5.45 84.66 0.46 1.03 16 18 N -0.95 -63.00 13.96 21.45 0.30 -62.70 16 19 Si 0.96 46.67 24.35 68.60 1.67 48.35 16 20 H -0.27 -12.30 6.89 99.48 0.69 -11.61 16 21 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 22 H -0.24 -10.50 6.53 99.48 0.65 -9.85 16 23 C 0.09 4.10 4.22 86.33 0.36 4.46 16 24 C 0.47 15.56 5.80 87.90 0.51 16.06 16 25 O -0.58 -26.14 16.37 -3.03 -0.05 -26.19 16 26 H 0.13 1.13 7.84 -2.91 -0.02 1.11 16 27 H 0.10 1.49 8.06 -2.91 -0.02 1.47 16 28 H 0.07 2.05 8.06 -2.91 -0.02 2.03 16 29 H 0.13 1.35 7.79 -2.39 -0.02 1.34 16 30 H 0.06 1.59 7.93 -2.39 -0.02 1.57 16 31 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 0.97 6.12 -2.39 -0.01 0.96 16 33 H 0.12 1.34 7.44 -2.39 -0.02 1.33 16 34 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.12 2.33 4.70 -2.39 -0.01 2.32 16 36 H 0.01 0.35 7.28 -2.39 -0.02 0.33 16 37 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 38 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.04 1.84 3.35 -2.39 -0.01 1.83 16 41 H 0.27 16.35 8.31 -92.70 -0.77 15.58 16 42 H 0.05 2.45 8.12 -2.39 -0.02 2.43 16 43 H 0.00 0.14 6.71 -2.38 -0.02 0.12 16 Total: -1.00 -84.20 326.12 1.37 -82.83 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.90 Total: 11.24 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 4.89 Total: -16.68 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -6.05 Total: -99.55 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.05 Total: -26.19 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.67 Total: 48.35 kcal Total: -84.20 1.37 -82.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.833 kcal (2) G-P(sol) polarization free energy of solvation -84.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds