Wall clock time and date at job start Tue Mar 31 2020 01:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 N 1.46500 * 109.47185 * 124.99974 * 3 2 1 5 5 C 1.46760 * 124.35021 * 90.00101 * 4 3 2 6 6 C 1.54474 * 105.47709 * 197.02101 * 5 4 3 7 7 C 1.54635 * 101.76013 * 334.58253 * 6 5 4 8 8 H 1.09001 * 110.48623 * 266.11803 * 7 6 5 9 9 N 1.46898 * 110.48423 * 143.61256 * 7 6 5 10 10 C 1.46848 * 111.00385 * 50.78722 * 9 7 6 11 11 C 1.53037 * 109.52304 * 185.83939 * 10 9 7 12 12 C 1.53123 * 109.27930 * 300.81999 * 11 10 9 13 13 C 1.53113 * 109.15895 * 57.65666 * 12 11 10 14 14 H 1.09000 * 109.53855 * 62.30929 * 13 12 11 15 15 C 1.50696 * 109.50321 * 182.40449 * 13 12 11 16 16 H 1.07998 * 120.00560 * 119.80518 * 15 13 12 17 17 C 1.37881 * 120.00251 * 299.80058 * 15 13 12 18 18 N 1.31512 * 120.00652 * 179.97438 * 17 15 13 19 19 Si 1.86808 * 119.99706 * 0.02562 * 17 15 13 20 20 H 1.48506 * 109.47034 * 89.99522 * 19 17 15 21 21 H 1.48493 * 109.47127 * 209.99973 * 19 17 15 22 22 H 1.48504 * 109.46768 * 329.99862 * 19 17 15 23 23 C 1.46846 * 110.99979 * 174.99934 * 9 7 6 24 24 C 1.34421 * 124.34859 * 269.70299 * 4 3 2 25 25 O 1.21282 * 124.94130 * 359.57143 * 24 4 3 26 26 H 1.07999 * 120.00108 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.99390 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.00080 * 179.72973 * 2 1 3 29 29 H 1.09000 * 109.46979 * 245.00349 * 3 2 1 30 30 H 1.08997 * 109.47064 * 5.00286 * 3 2 1 31 31 H 1.09008 * 110.24242 * 316.01959 * 5 4 3 32 32 H 1.09000 * 110.24668 * 77.92842 * 5 4 3 33 33 H 1.08992 * 110.97509 * 92.69934 * 6 5 4 34 34 H 1.08996 * 110.96921 * 216.43274 * 6 5 4 35 35 H 1.08999 * 109.46613 * 305.85651 * 10 9 7 36 36 H 1.08998 * 109.46120 * 65.82727 * 10 9 7 37 37 H 1.09001 * 109.50328 * 180.88568 * 11 10 9 38 38 H 1.08996 * 109.53891 * 60.78099 * 11 10 9 39 39 H 1.09004 * 109.52170 * 297.75127 * 12 11 10 40 40 H 1.09002 * 109.52083 * 177.56481 * 12 11 10 41 41 H 0.96997 * 120.00450 * 180.02562 * 18 17 15 42 42 H 1.09006 * 109.46406 * 294.17284 * 23 9 7 43 43 H 1.08999 * 109.46248 * 54.15394 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3792 0.8509 1.0760 6 6 4.8115 0.6687 2.5478 7 6 3.8799 1.6656 3.2756 8 1 4.3754 2.6282 3.4018 9 7 3.4674 1.1264 4.5783 10 6 4.6302 0.6739 5.3527 11 6 4.1548 -0.0117 6.6356 12 6 3.3231 0.9762 7.4585 13 6 2.1460 1.4689 6.6123 14 1 1.5029 0.6267 6.3569 15 6 1.3557 2.4864 7.3939 16 1 1.2446 3.4914 7.0144 17 6 0.7742 2.1344 8.5935 18 7 0.0848 3.0225 9.2759 19 14 0.9667 0.3962 9.2502 20 1 2.1814 0.3203 10.1011 21 1 -0.2266 0.0372 10.0578 22 1 1.0985 -0.5505 8.1137 23 6 2.6796 2.1116 5.3300 24 6 2.6898 1.8056 2.3522 25 8 1.6168 2.2745 2.6679 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5399 -0.9354 -0.0004 28 1 1.8500 -0.9352 0.0044 29 1 2.6213 1.4026 -0.9314 30 1 1.3586 2.1316 0.0896 31 1 4.4268 -0.1017 0.5482 32 1 5.0146 1.5867 0.5831 33 1 4.6298 -0.3519 2.8843 34 1 5.8580 0.9417 2.6836 35 1 5.2108 -0.0312 4.7578 36 1 5.2523 1.5316 5.6084 37 1 5.0184 -0.3335 7.2178 38 1 3.5441 -0.8780 6.3813 39 1 3.9447 1.8240 7.7467 40 1 2.9464 0.4790 8.3524 41 1 -0.3239 2.7749 10.1200 42 1 3.3109 2.9626 5.5858 43 1 1.8433 2.4506 4.7186 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595623963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:01 Heat of formation + Delta-G solvation = 1.395090 kcal Electronic energy + Delta-G solvation = -22685.125809 eV Core-core repulsion = 19537.975147 eV Total energy + Delta-G solvation = -3147.150662 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.58569 -38.04615 -36.36656 -35.06160 -33.39741 -32.00574 -30.38547 -30.06135 -27.10084 -26.03355 -24.88101 -23.05690 -22.08572 -20.54951 -20.12387 -19.20495 -18.85794 -16.93184 -16.67981 -16.58374 -15.67791 -15.14019 -14.54054 -14.26901 -14.22745 -13.83881 -13.79766 -13.59932 -13.18249 -12.86676 -12.58077 -12.50859 -12.21128 -12.12560 -11.89296 -11.69570 -11.41108 -11.21170 -11.02850 -10.97018 -10.41027 -10.14021 -9.93917 -9.73435 -9.57919 -9.30643 -8.98408 -8.79998 -8.72426 -8.40650 -7.83355 -5.96722 -3.94632 2.03084 2.76496 3.13385 3.34293 3.45793 3.50110 4.23347 4.35695 4.49875 4.51293 4.75077 4.91082 5.00474 5.04663 5.16204 5.30262 5.34332 5.35867 5.47760 5.53846 5.58707 5.67695 5.79662 5.80404 5.91082 6.01898 6.21317 6.33575 6.39694 6.46655 6.49876 6.52170 6.62829 6.77897 6.85799 6.90176 7.13511 7.34146 7.44296 7.62295 7.77505 7.95095 8.38386 8.64590 9.08064 9.66219 11.16862 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020641 B = 0.005173 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.196859 B = 5410.923874 C = 6050.479238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.181 4.181 3 C 0.156 3.844 4 N -0.623 5.623 5 C 0.107 3.893 6 C -0.128 4.128 7 C 0.051 3.949 8 H 0.074 0.926 9 N -0.523 5.523 10 C 0.061 3.939 11 C -0.119 4.119 12 C -0.124 4.124 13 C 0.022 3.978 14 H 0.034 0.966 15 C -0.508 4.508 16 H 0.073 0.927 17 C 0.069 3.931 18 N -0.904 5.904 19 Si 0.887 3.113 20 H -0.281 1.281 21 H -0.299 1.299 22 H -0.264 1.264 23 C 0.065 3.935 24 C 0.530 3.470 25 O -0.504 6.504 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.029 0.971 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.262 0.738 42 H 0.023 0.977 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.618 -7.289 -19.009 23.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.200 4.200 3 C 0.035 3.965 4 N -0.359 5.359 5 C -0.016 4.016 6 C -0.166 4.166 7 C -0.061 4.061 8 H 0.091 0.909 9 N -0.249 5.249 10 C -0.066 4.066 11 C -0.156 4.156 12 C -0.161 4.161 13 C 0.003 3.997 14 H 0.052 0.948 15 C -0.547 4.547 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.543 5.543 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.227 1.227 22 H -0.189 1.189 23 C -0.061 4.061 24 C 0.316 3.684 25 O -0.377 6.377 26 H 0.118 0.882 27 H 0.117 0.883 28 H 0.126 0.874 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.042 0.958 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.584 -7.376 -18.815 22.813 hybrid contribution 0.637 -0.282 0.679 0.973 sum 11.221 -7.658 -18.136 22.660 Atomic orbital electron populations 1.23907 0.95903 1.02184 0.98414 1.23229 0.96360 0.98683 1.01719 1.20401 0.91877 0.96080 0.88187 1.48200 1.12820 1.63405 1.11428 1.22029 0.82134 0.99745 0.97722 1.22766 0.99371 1.01243 0.93251 1.22223 0.93999 0.98159 0.91706 0.90887 1.62010 1.21018 1.40232 1.01638 1.22071 0.91468 0.98345 0.94762 1.21645 0.99404 0.99361 0.95236 1.22049 0.98464 0.97410 0.98186 1.19132 0.92815 0.96758 0.90974 0.94794 1.21010 1.30939 0.98194 1.04533 0.90936 1.24976 0.94674 0.96868 0.96636 1.69904 1.35070 1.34205 1.15118 0.86832 0.76208 0.86144 0.79000 1.20785 1.22677 1.18869 1.22387 0.96713 0.91201 0.95795 1.20695 0.88804 0.76465 0.82403 1.90720 1.25729 1.44111 1.77128 0.88240 0.88316 0.87388 0.89888 0.89651 0.90549 0.91314 0.88824 0.89462 0.91477 0.95231 0.92679 0.91847 0.92549 0.93574 0.92811 0.95843 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 14.32 29.01 0.42 -1.37 16 2 C -0.18 -1.91 9.85 -36.03 -0.35 -2.27 16 3 C 0.16 1.62 6.37 -5.19 -0.03 1.59 16 4 N -0.62 -7.53 2.92 -173.79 -0.51 -8.04 16 5 C 0.11 0.89 7.35 -3.13 -0.02 0.87 16 6 C -0.13 -1.24 5.37 -25.10 -0.13 -1.38 16 7 C 0.05 0.75 2.66 -67.72 -0.18 0.57 16 8 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 9 N -0.52 -9.42 4.51 -226.70 -1.02 -10.44 16 10 C 0.06 0.95 5.15 -3.83 -0.02 0.93 16 11 C -0.12 -2.09 6.09 -26.65 -0.16 -2.26 16 12 C -0.12 -2.75 4.74 -26.61 -0.13 -2.88 16 13 C 0.02 0.56 1.85 -91.69 -0.17 0.39 16 14 H 0.03 0.91 7.20 -51.93 -0.37 0.54 16 15 C -0.51 -15.04 9.14 -34.44 -0.31 -15.36 16 16 H 0.07 2.33 7.99 -52.49 -0.42 1.91 16 17 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 18 N -0.90 -28.74 13.96 55.43 0.77 -27.96 16 19 Si 0.89 22.95 24.36 -169.99 -4.14 18.81 16 20 H -0.28 -6.99 6.89 56.52 0.39 -6.61 16 21 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 22 H -0.26 -6.62 6.53 56.52 0.37 -6.25 16 23 C 0.07 1.45 4.56 -3.83 -0.02 1.44 16 24 C 0.53 8.73 7.62 -10.86 -0.08 8.64 16 25 O -0.50 -10.65 15.17 5.56 0.08 -10.56 16 26 H 0.10 1.08 7.84 -52.49 -0.41 0.67 16 27 H 0.10 0.94 8.06 -52.49 -0.42 0.52 16 28 H 0.11 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.00 7.57 -51.93 -0.39 0.61 16 31 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.96 7.31 -51.93 -0.38 0.58 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.83 6.24 -51.93 -0.32 0.51 16 36 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.05 1.09 3.37 -51.93 -0.17 0.91 16 41 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 2.31 5.64 -51.93 -0.29 2.02 16 LS Contribution 330.94 15.07 4.99 4.99 Total: -1.00 -34.79 330.94 -8.15 -42.94 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -7.02 Total: -0.65 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -1.30 Total: -9.08 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -0.76 Total: -46.44 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.08 Total: -10.56 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.14 Total: 18.81 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.79 -8.15 -42.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.331 kcal (2) G-P(sol) polarization free energy of solvation -34.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds