Wall clock time and date at job start Tue Mar 31 2020 01:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 N 1.46500 * 109.47185 * 124.99974 * 3 2 1 5 5 C 1.46760 * 124.35021 * 90.00101 * 4 3 2 6 6 C 1.54474 * 105.47709 * 197.02101 * 5 4 3 7 7 C 1.54635 * 101.76013 * 334.58253 * 6 5 4 8 8 H 1.09001 * 110.48623 * 266.11803 * 7 6 5 9 9 N 1.46898 * 110.48423 * 143.61256 * 7 6 5 10 10 C 1.46848 * 111.00385 * 50.78722 * 9 7 6 11 11 C 1.53037 * 109.52304 * 185.83939 * 10 9 7 12 12 C 1.53123 * 109.27930 * 300.81999 * 11 10 9 13 13 C 1.53113 * 109.15895 * 57.65666 * 12 11 10 14 14 H 1.09000 * 109.53855 * 62.30929 * 13 12 11 15 15 C 1.50696 * 109.50321 * 182.40449 * 13 12 11 16 16 H 1.07998 * 120.00560 * 119.80518 * 15 13 12 17 17 C 1.37881 * 120.00251 * 299.80058 * 15 13 12 18 18 N 1.31512 * 120.00652 * 179.97438 * 17 15 13 19 19 Si 1.86808 * 119.99706 * 0.02562 * 17 15 13 20 20 H 1.48506 * 109.47034 * 89.99522 * 19 17 15 21 21 H 1.48493 * 109.47127 * 209.99973 * 19 17 15 22 22 H 1.48504 * 109.46768 * 329.99862 * 19 17 15 23 23 C 1.46846 * 110.99979 * 174.99934 * 9 7 6 24 24 C 1.34421 * 124.34859 * 269.70299 * 4 3 2 25 25 O 1.21282 * 124.94130 * 359.57143 * 24 4 3 26 26 H 1.07999 * 120.00108 * 0.02562 * 1 2 3 27 27 H 1.08000 * 119.99390 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.00080 * 179.72973 * 2 1 3 29 29 H 1.09000 * 109.46979 * 245.00349 * 3 2 1 30 30 H 1.08997 * 109.47064 * 5.00286 * 3 2 1 31 31 H 1.09008 * 110.24242 * 316.01959 * 5 4 3 32 32 H 1.09000 * 110.24668 * 77.92842 * 5 4 3 33 33 H 1.08992 * 110.97509 * 92.69934 * 6 5 4 34 34 H 1.08996 * 110.96921 * 216.43274 * 6 5 4 35 35 H 1.08999 * 109.46613 * 305.85651 * 10 9 7 36 36 H 1.08998 * 109.46120 * 65.82727 * 10 9 7 37 37 H 1.09001 * 109.50328 * 180.88568 * 11 10 9 38 38 H 1.08996 * 109.53891 * 60.78099 * 11 10 9 39 39 H 1.09004 * 109.52170 * 297.75127 * 12 11 10 40 40 H 1.09002 * 109.52083 * 177.56481 * 12 11 10 41 41 H 0.96997 * 120.00450 * 180.02562 * 18 17 15 42 42 H 1.09006 * 109.46406 * 294.17284 * 23 9 7 43 43 H 1.08999 * 109.46248 * 54.15394 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3792 0.8509 1.0760 6 6 4.8115 0.6687 2.5478 7 6 3.8799 1.6656 3.2756 8 1 4.3754 2.6282 3.4018 9 7 3.4674 1.1264 4.5783 10 6 4.6302 0.6739 5.3527 11 6 4.1548 -0.0117 6.6356 12 6 3.3231 0.9762 7.4585 13 6 2.1460 1.4689 6.6123 14 1 1.5029 0.6267 6.3569 15 6 1.3557 2.4864 7.3939 16 1 1.2446 3.4914 7.0144 17 6 0.7742 2.1344 8.5935 18 7 0.0848 3.0225 9.2759 19 14 0.9667 0.3962 9.2502 20 1 2.1814 0.3203 10.1011 21 1 -0.2266 0.0372 10.0578 22 1 1.0985 -0.5505 8.1137 23 6 2.6796 2.1116 5.3300 24 6 2.6898 1.8056 2.3522 25 8 1.6168 2.2745 2.6679 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5399 -0.9354 -0.0004 28 1 1.8500 -0.9352 0.0044 29 1 2.6213 1.4026 -0.9314 30 1 1.3586 2.1316 0.0896 31 1 4.4268 -0.1017 0.5482 32 1 5.0146 1.5867 0.5831 33 1 4.6298 -0.3519 2.8843 34 1 5.8580 0.9417 2.6836 35 1 5.2108 -0.0312 4.7578 36 1 5.2523 1.5316 5.6084 37 1 5.0184 -0.3335 7.2178 38 1 3.5441 -0.8780 6.3813 39 1 3.9447 1.8240 7.7467 40 1 2.9464 0.4790 8.3524 41 1 -0.3239 2.7749 10.1200 42 1 3.3109 2.9626 5.5858 43 1 1.8433 2.4506 4.7186 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595623963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:00 Heat of formation + Delta-G solvation = -24.322361 kcal Electronic energy + Delta-G solvation = -22686.241001 eV Core-core repulsion = 19537.975147 eV Total energy + Delta-G solvation = -3148.265855 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.70496 -39.52208 -37.55550 -36.23321 -34.99684 -33.72954 -32.01593 -31.25854 -28.14680 -27.23425 -26.63776 -24.47711 -23.48405 -21.83588 -21.09943 -20.54936 -20.24477 -18.86864 -17.96956 -17.67384 -17.06337 -16.44593 -15.87213 -15.72554 -15.53857 -15.16720 -15.00789 -14.84831 -14.67860 -14.35791 -14.09888 -13.81748 -13.63964 -13.41853 -13.02664 -12.90583 -12.71771 -12.55480 -12.35648 -12.14098 -11.99970 -11.86624 -11.72930 -11.45929 -11.15153 -10.87368 -10.74545 -10.55571 -10.29622 -9.68279 -9.23367 -8.32370 -6.36300 1.16083 1.26141 1.34174 1.45989 1.57497 2.21266 2.31352 3.02809 3.04523 3.36233 3.64647 3.93726 4.02678 4.08633 4.12576 4.17881 4.21778 4.30036 4.39300 4.45863 4.52068 4.68604 4.70328 4.73825 4.78668 4.85897 4.94127 4.96409 5.00264 5.10062 5.13663 5.22221 5.25587 5.46078 5.60984 5.62179 5.63682 5.74100 5.79294 6.09911 6.10514 6.26050 6.33879 6.70485 7.22867 7.28673 8.85316 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020641 B = 0.005173 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.196859 B = 5410.923874 C = 6050.479238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.179 4.179 3 C 0.150 3.850 4 N -0.614 5.614 5 C 0.104 3.896 6 C -0.115 4.115 7 C 0.045 3.955 8 H 0.075 0.925 9 N -0.532 5.532 10 C 0.060 3.940 11 C -0.114 4.114 12 C -0.122 4.122 13 C 0.024 3.976 14 H 0.014 0.986 15 C -0.523 4.523 16 H 0.023 0.977 17 C 0.011 3.989 18 N -0.952 5.952 19 Si 0.958 3.042 20 H -0.258 1.258 21 H -0.298 1.298 22 H -0.252 1.252 23 C 0.082 3.918 24 C 0.511 3.489 25 O -0.572 6.572 26 H 0.087 0.913 27 H 0.110 0.890 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.036 0.964 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.035 0.965 41 H 0.266 0.734 42 H 0.011 0.989 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.569 -10.696 -20.649 27.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.198 4.198 3 C 0.029 3.971 4 N -0.347 5.347 5 C -0.018 4.018 6 C -0.152 4.152 7 C -0.067 4.067 8 H 0.092 0.908 9 N -0.258 5.258 10 C -0.066 4.066 11 C -0.152 4.152 12 C -0.160 4.160 13 C 0.005 3.995 14 H 0.032 0.968 15 C -0.561 4.561 16 H 0.041 0.959 17 C -0.186 4.186 18 N -0.593 5.593 19 Si 0.784 3.216 20 H -0.183 1.183 21 H -0.225 1.225 22 H -0.176 1.176 23 C -0.046 4.046 24 C 0.299 3.701 25 O -0.450 6.450 26 H 0.106 0.894 27 H 0.128 0.872 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.142 0.858 35 H 0.134 0.866 36 H 0.054 0.946 37 H 0.111 0.889 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.029 0.971 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.603 -10.809 -20.516 27.404 hybrid contribution -0.629 0.900 1.073 1.536 sum 13.974 -9.909 -19.443 25.913 Atomic orbital electron populations 1.24037 0.96525 1.02287 0.99297 1.23390 0.96260 0.99287 1.00877 1.20582 0.92051 0.95300 0.89191 1.48350 1.14626 1.61542 1.10211 1.22413 0.79784 1.02088 0.97498 1.22858 0.99965 0.99600 0.92814 1.22405 0.94329 1.00040 0.89952 0.90785 1.61872 1.22498 1.38667 1.02745 1.22233 0.90632 0.99429 0.94338 1.21652 0.99868 0.97793 0.95881 1.21917 0.97641 0.98519 0.97888 1.19010 0.93482 0.94711 0.92318 0.96757 1.21336 1.32084 0.97381 1.05304 0.95900 1.25917 0.94079 1.01816 0.96782 1.70063 1.36479 1.36865 1.15888 0.85702 0.76963 0.80168 0.78751 1.18326 1.22529 1.17587 1.21904 0.96324 0.91772 0.94570 1.21263 0.88539 0.76152 0.84189 1.90686 1.28423 1.47261 1.78620 0.89424 0.87194 0.85619 0.85818 0.92125 0.87462 0.88397 0.88531 0.85760 0.86648 0.94599 0.88918 0.92022 0.93098 0.94646 0.92487 0.97061 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.95 14.32 67.78 0.97 -2.98 16 2 C -0.18 -3.51 9.85 25.64 0.25 -3.25 16 3 C 0.15 2.88 6.37 85.63 0.55 3.43 16 4 N -0.61 -13.46 2.92 -822.33 -2.40 -15.86 16 5 C 0.10 1.18 7.35 86.83 0.64 1.82 16 6 C -0.11 -1.60 5.37 31.65 0.17 -1.43 16 7 C 0.04 1.21 2.66 44.91 0.12 1.33 16 8 H 0.07 2.00 8.13 -2.39 -0.02 1.98 16 9 N -0.53 -18.46 4.51 -871.14 -3.93 -22.39 16 10 C 0.06 1.63 5.15 86.33 0.44 2.08 16 11 C -0.11 -3.60 6.09 30.65 0.19 -3.41 16 12 C -0.12 -5.30 4.74 30.67 0.15 -5.15 16 13 C 0.02 1.25 1.85 -11.49 -0.02 1.22 16 14 H 0.01 0.79 7.20 -2.39 -0.02 0.77 16 15 C -0.52 -32.89 9.14 25.60 0.23 -32.66 16 16 H 0.02 1.60 7.99 -2.91 -0.02 1.58 16 17 C 0.01 0.66 5.45 84.66 0.46 1.12 16 18 N -0.95 -63.33 13.96 21.45 0.30 -63.03 16 19 Si 0.96 48.12 24.36 68.60 1.67 49.79 16 20 H -0.26 -11.94 6.89 99.48 0.69 -11.26 16 21 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 22 H -0.25 -12.05 6.53 99.48 0.65 -11.40 16 23 C 0.08 3.82 4.56 86.33 0.39 4.21 16 24 C 0.51 16.86 7.62 87.90 0.67 17.53 16 25 O -0.57 -25.87 15.17 -3.03 -0.05 -25.91 16 26 H 0.09 2.05 7.84 -2.91 -0.02 2.02 16 27 H 0.11 2.05 8.06 -2.91 -0.02 2.03 16 28 H 0.13 2.02 8.06 -2.91 -0.02 1.99 16 29 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.47 7.57 -2.39 -0.02 1.46 16 31 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.10 1.37 7.31 -2.39 -0.02 1.35 16 34 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.12 2.09 6.24 -2.39 -0.01 2.08 16 36 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.04 1.60 3.37 -2.39 -0.01 1.59 16 41 H 0.27 16.45 8.31 -92.71 -0.77 15.68 16 42 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 43 H 0.06 3.12 5.64 -2.39 -0.01 3.11 16 Total: -1.00 -84.91 330.94 1.70 -83.21 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.89 Total: 10.35 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: 5.21 Total: -16.16 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -6.03 Total: -101.28 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.05 Total: -25.91 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 1.67 Total: 49.79 kcal Total: -84.91 1.70 -83.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595623963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.890 kcal (2) G-P(sol) polarization free energy of solvation -84.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds