Wall clock time and date at job start Tue Mar 31 2020 00:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47184 * 2 1 4 4 H 1.08993 * 109.46765 * 54.99676 * 3 2 1 5 5 C 1.52997 * 109.46943 * 294.99917 * 3 2 1 6 6 C 1.52996 * 109.47131 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46972 * 60.00459 * 6 5 3 8 8 C 1.52997 * 109.46817 * 299.99733 * 7 6 5 9 9 C 1.52999 * 109.47000 * 175.00261 * 3 2 1 10 10 H 1.08993 * 109.47839 * 60.00073 * 9 3 2 11 11 C 1.50698 * 109.46824 * 299.99593 * 9 3 2 12 12 N 1.29944 * 126.28972 * 299.68653 * 11 9 3 13 13 O 1.21301 * 110.25068 * 179.84503 * 12 11 9 14 14 C 1.33643 * 109.81031 * 0.43077 * 13 12 11 15 15 C 1.50705 * 126.55007 * 179.75654 * 14 13 12 16 16 H 1.08998 * 109.47078 * 179.97438 * 15 14 13 17 17 C 1.52993 * 109.47253 * 299.97518 * 15 14 13 18 18 C 1.50700 * 109.46793 * 59.97608 * 15 14 13 19 19 H 1.07996 * 120.00480 * 359.97438 * 18 15 14 20 20 C 1.37881 * 119.99511 * 179.97438 * 18 15 14 21 21 N 1.31516 * 120.00183 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 119.99687 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47598 * 60.00264 * 22 20 18 24 24 H 1.48499 * 109.47063 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47367 * 299.99845 * 22 20 18 26 26 N 1.31126 * 106.89953 * 359.73643 * 14 13 12 27 27 H 1.08997 * 109.46828 * 299.99994 * 1 2 3 28 28 H 1.09000 * 109.47001 * 60.00563 * 1 2 3 29 29 H 1.09002 * 109.46911 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47273 * 239.99818 * 2 1 3 31 31 H 1.08998 * 109.47609 * 119.99870 * 2 1 3 32 32 H 1.09001 * 109.47289 * 59.99701 * 5 3 2 33 33 H 1.09000 * 109.47611 * 300.00272 * 5 3 2 34 34 H 1.08996 * 109.47452 * 300.00000 * 6 5 3 35 35 H 1.09000 * 109.47054 * 180.02562 * 6 5 3 36 36 H 1.09002 * 109.47070 * 179.97438 * 7 6 5 37 37 H 1.08996 * 109.47407 * 59.99513 * 7 6 5 38 38 H 1.09001 * 109.47502 * 300.00518 * 8 7 6 39 39 H 1.09001 * 109.47289 * 180.02562 * 8 7 6 40 40 H 1.09006 * 109.47334 * 60.00275 * 17 15 14 41 41 H 1.09001 * 109.47368 * 179.97438 * 17 15 14 42 42 H 1.09005 * 109.47291 * 300.00449 * 17 15 14 43 43 H 0.97000 * 119.99433 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6353 2.1265 -1.3073 6 6 2.1447 3.5692 -1.3071 7 6 3.6695 3.5716 -1.1812 8 6 4.0743 2.8876 0.1261 9 6 3.5648 1.4443 0.1257 10 1 3.9995 0.9054 -0.7161 11 6 3.9635 0.7706 1.4134 12 7 3.6307 1.1451 2.6124 13 8 4.1081 0.3923 3.4350 14 6 4.8199 -0.5574 2.8207 15 6 5.5763 -1.6809 3.4816 16 1 6.0572 -2.2932 2.7188 17 6 6.6404 -1.0998 4.4147 18 6 4.6196 -2.5303 4.2780 19 1 3.5690 -2.2813 4.3034 20 6 5.0855 -3.6254 4.9742 21 7 6.3650 -3.9284 4.9436 22 14 3.8998 -4.6779 5.9619 23 1 2.8661 -5.2415 5.0568 24 1 4.6449 -5.7858 6.6121 25 1 3.2455 -3.8436 7.0017 26 7 4.7340 -0.3252 1.5330 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 0.5490 2.1252 -1.3970 33 1 2.0698 1.5875 -2.1492 34 1 1.7098 4.1080 -0.4654 35 1 1.8560 4.0566 -2.2383 36 1 4.0325 4.5994 -1.1815 37 1 4.1045 3.0327 -2.0229 38 1 3.6393 3.4263 0.9680 39 1 5.1606 2.8896 0.2162 40 1 6.1595 -0.4875 5.1776 41 1 7.1872 -1.9124 4.8931 42 1 7.3324 -0.4853 3.8387 43 1 6.6926 -4.6991 5.4332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596603542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:49 Heat of formation + Delta-G solvation = 19.844156 kcal Electronic energy + Delta-G solvation = -22382.655256 eV Core-core repulsion = 19236.304605 eV Total energy + Delta-G solvation = -3146.350651 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.68232 -39.21580 -35.20246 -34.64752 -33.96295 -32.23747 -30.73917 -29.41596 -28.93133 -25.37557 -24.15147 -23.84308 -23.38750 -21.85030 -20.69851 -20.31711 -19.14038 -17.28507 -16.75287 -16.00106 -15.47777 -15.00597 -14.83120 -14.35575 -14.13171 -13.81908 -13.56581 -13.30251 -12.96322 -12.77561 -12.48973 -11.86306 -11.75861 -11.61588 -11.51214 -11.24502 -11.16559 -11.11167 -11.00693 -10.89932 -10.76945 -10.64685 -10.47780 -10.39324 -10.27517 -10.12501 -10.03762 -9.95429 -9.40774 -8.81583 -8.56129 -6.21160 -4.30336 2.06533 3.05027 3.25977 3.29955 3.34116 3.89935 4.15079 4.31920 4.49120 4.66660 4.82025 4.89145 5.05998 5.10511 5.16051 5.26597 5.31425 5.39886 5.43779 5.46312 5.61712 5.63473 5.68403 5.89020 5.93071 5.97270 6.05764 6.08161 6.12273 6.15448 6.23388 6.28073 6.39188 6.50931 6.58300 6.61834 6.74069 6.88157 6.90119 7.39654 7.63273 7.81120 8.01758 8.68550 9.05877 9.35695 10.85033 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024908 B = 0.004506 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.887976 B = 6211.774719 C = 6981.607234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.077 4.077 4 H 0.076 0.924 5 C -0.113 4.113 6 C -0.121 4.121 7 C -0.116 4.116 8 C -0.111 4.111 9 C 0.015 3.985 10 H 0.094 0.906 11 C 0.167 3.833 12 N -0.408 5.408 13 O 0.066 5.934 14 C 0.241 3.759 15 C 0.125 3.875 16 H 0.074 0.926 17 C -0.138 4.138 18 C -0.523 4.523 19 H 0.061 0.939 20 C 0.071 3.929 21 N -0.885 5.885 22 Si 0.903 3.097 23 H -0.275 1.275 24 H -0.284 1.284 25 H -0.274 1.274 26 N -0.516 5.516 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.100 0.900 42 H 0.016 0.984 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.459 11.186 -10.664 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.096 4.096 4 H 0.094 0.906 5 C -0.150 4.150 6 C -0.158 4.158 7 C -0.154 4.154 8 C -0.149 4.149 9 C -0.005 4.005 10 H 0.113 0.887 11 C -0.106 4.106 12 N -0.121 5.121 13 O 0.012 5.988 14 C 0.023 3.977 15 C 0.105 3.895 16 H 0.092 0.908 17 C -0.197 4.197 18 C -0.561 4.561 19 H 0.079 0.921 20 C -0.133 4.133 21 N -0.522 5.522 22 Si 0.730 3.270 23 H -0.201 1.201 24 H -0.210 1.210 25 H -0.199 1.199 26 N -0.250 5.250 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.119 0.881 42 H 0.035 0.965 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.728 11.660 -10.846 17.287 hybrid contribution -0.480 -0.792 0.708 1.166 sum -7.208 10.869 -10.138 16.518 Atomic orbital electron populations 1.21787 0.95867 1.01523 1.01499 1.21561 0.95783 0.95969 1.02467 1.21200 0.93253 0.96603 0.98559 0.90605 1.21627 1.00816 0.95460 0.97123 1.21563 0.95746 0.96877 1.01638 1.21519 0.95996 1.00398 0.97463 1.21574 1.00919 0.94025 0.98401 1.19505 0.95924 0.94850 0.90259 0.88744 1.25534 0.96780 0.93104 0.95228 1.74467 1.20851 1.16358 1.00420 1.85252 1.48790 1.30535 1.34217 1.30122 0.89784 0.91502 0.86308 1.17796 0.92099 0.84730 0.94885 0.90824 1.21851 0.97959 1.00995 0.98855 1.20830 0.93905 1.10882 1.30516 0.92073 1.24869 0.95447 0.96908 0.96026 1.69845 1.12900 1.27549 1.41898 0.86459 0.80699 0.79653 0.80163 1.20056 1.20964 1.19890 1.71973 1.21041 1.15351 1.16608 0.92915 0.92662 0.92849 0.91800 0.92054 0.91456 0.91747 0.91938 0.92031 0.91808 0.91757 0.91268 0.91742 0.94234 0.88103 0.96487 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.67 37.16 0.36 -1.40 16 2 C -0.12 -1.68 5.25 -26.73 -0.14 -1.82 16 3 C -0.08 -1.00 1.71 -90.62 -0.15 -1.15 16 4 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 5 C -0.11 -1.13 4.96 -26.73 -0.13 -1.26 16 6 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 7 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 8 C -0.11 -1.41 5.19 -26.71 -0.14 -1.55 16 9 C 0.01 0.22 2.20 -91.75 -0.20 0.02 16 10 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 11 C 0.17 3.22 5.38 -156.37 -0.84 2.38 16 12 N -0.41 -8.47 12.16 30.90 0.38 -8.09 16 13 O 0.07 1.49 11.31 18.10 0.20 1.70 16 14 C 0.24 5.57 6.96 -13.06 -0.09 5.48 16 15 C 0.13 3.08 2.77 -92.92 -0.26 2.82 16 16 H 0.07 1.92 8.14 -51.93 -0.42 1.50 16 17 C -0.14 -3.17 8.95 37.15 0.33 -2.84 16 18 C -0.52 -13.82 8.55 -34.44 -0.29 -14.12 16 19 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 20 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 21 N -0.88 -23.63 11.32 55.43 0.63 -23.00 16 22 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 N -0.52 -11.34 11.55 -9.87 -0.11 -11.46 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.54 6.57 -51.93 -0.34 0.20 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.08 7.05 -51.93 -0.37 0.71 16 32 H 0.07 0.61 6.57 -51.93 -0.34 0.27 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 340.33 15.07 5.13 5.13 Total: -1.00 -27.04 340.33 -8.01 -35.06 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -7.25 Total: -0.55 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -1.97 Total: -14.24 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.89 Total: -42.55 kcal Atomic # 8 Polarization: 1.49 SS G_CDS: 0.20 Total: 1.70 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -27.04 -8.01 -35.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596603542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.901 kcal (2) G-P(sol) polarization free energy of solvation -27.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds