Wall clock time and date at job start Tue Mar 31 2020 00:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47184 * 2 1 4 4 H 1.08993 * 109.46765 * 54.99676 * 3 2 1 5 5 C 1.52997 * 109.46943 * 294.99917 * 3 2 1 6 6 C 1.52996 * 109.47131 * 179.97438 * 5 3 2 7 7 C 1.53002 * 109.46972 * 60.00459 * 6 5 3 8 8 C 1.52997 * 109.46817 * 299.99733 * 7 6 5 9 9 C 1.52999 * 109.47000 * 175.00261 * 3 2 1 10 10 H 1.08993 * 109.47839 * 60.00073 * 9 3 2 11 11 C 1.50698 * 109.46824 * 299.99593 * 9 3 2 12 12 N 1.29944 * 126.28972 * 299.68653 * 11 9 3 13 13 O 1.21301 * 110.25068 * 179.84503 * 12 11 9 14 14 C 1.33643 * 109.81031 * 0.43077 * 13 12 11 15 15 C 1.50705 * 126.55007 * 179.75654 * 14 13 12 16 16 H 1.08998 * 109.47078 * 179.97438 * 15 14 13 17 17 C 1.52993 * 109.47253 * 299.97518 * 15 14 13 18 18 C 1.50700 * 109.46793 * 59.97608 * 15 14 13 19 19 H 1.07996 * 120.00480 * 359.97438 * 18 15 14 20 20 C 1.37881 * 119.99511 * 179.97438 * 18 15 14 21 21 N 1.31516 * 120.00183 * 0.02562 * 20 18 15 22 22 Si 1.86799 * 119.99687 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47598 * 60.00264 * 22 20 18 24 24 H 1.48499 * 109.47063 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47367 * 299.99845 * 22 20 18 26 26 N 1.31126 * 106.89953 * 359.73643 * 14 13 12 27 27 H 1.08997 * 109.46828 * 299.99994 * 1 2 3 28 28 H 1.09000 * 109.47001 * 60.00563 * 1 2 3 29 29 H 1.09002 * 109.46911 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47273 * 239.99818 * 2 1 3 31 31 H 1.08998 * 109.47609 * 119.99870 * 2 1 3 32 32 H 1.09001 * 109.47289 * 59.99701 * 5 3 2 33 33 H 1.09000 * 109.47611 * 300.00272 * 5 3 2 34 34 H 1.08996 * 109.47452 * 300.00000 * 6 5 3 35 35 H 1.09000 * 109.47054 * 180.02562 * 6 5 3 36 36 H 1.09002 * 109.47070 * 179.97438 * 7 6 5 37 37 H 1.08996 * 109.47407 * 59.99513 * 7 6 5 38 38 H 1.09001 * 109.47502 * 300.00518 * 8 7 6 39 39 H 1.09001 * 109.47289 * 180.02562 * 8 7 6 40 40 H 1.09006 * 109.47334 * 60.00275 * 17 15 14 41 41 H 1.09001 * 109.47368 * 179.97438 * 17 15 14 42 42 H 1.09005 * 109.47291 * 300.00449 * 17 15 14 43 43 H 0.97000 * 119.99433 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6353 2.1265 -1.3073 6 6 2.1447 3.5692 -1.3071 7 6 3.6695 3.5716 -1.1812 8 6 4.0743 2.8876 0.1261 9 6 3.5648 1.4443 0.1257 10 1 3.9995 0.9054 -0.7161 11 6 3.9635 0.7706 1.4134 12 7 3.6307 1.1451 2.6124 13 8 4.1081 0.3923 3.4350 14 6 4.8199 -0.5574 2.8207 15 6 5.5763 -1.6809 3.4816 16 1 6.0572 -2.2932 2.7188 17 6 6.6404 -1.0998 4.4147 18 6 4.6196 -2.5303 4.2780 19 1 3.5690 -2.2813 4.3034 20 6 5.0855 -3.6254 4.9742 21 7 6.3650 -3.9284 4.9436 22 14 3.8998 -4.6779 5.9619 23 1 2.8661 -5.2415 5.0568 24 1 4.6449 -5.7858 6.6121 25 1 3.2455 -3.8436 7.0017 26 7 4.7340 -0.3252 1.5330 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 0.5490 2.1252 -1.3970 33 1 2.0698 1.5875 -2.1492 34 1 1.7098 4.1080 -0.4654 35 1 1.8560 4.0566 -2.2383 36 1 4.0325 4.5994 -1.1815 37 1 4.1045 3.0327 -2.0229 38 1 3.6393 3.4263 0.9680 39 1 5.1606 2.8896 0.2162 40 1 6.1595 -0.4875 5.1776 41 1 7.1872 -1.9124 4.8931 42 1 7.3324 -0.4853 3.8387 43 1 6.6926 -4.6991 5.4332 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596603542.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:48 Heat of formation + Delta-G solvation = 5.464941 kcal Electronic energy + Delta-G solvation = -22383.278786 eV Core-core repulsion = 19236.304605 eV Total energy + Delta-G solvation = -3146.974180 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.38451 -40.24715 -37.03547 -36.35123 -34.94168 -33.96973 -32.20120 -30.93483 -29.96485 -27.38787 -25.45461 -25.20264 -24.81916 -23.38495 -21.77405 -21.50217 -20.43950 -19.05759 -18.47643 -17.92939 -16.88152 -16.53241 -15.88947 -15.65386 -15.45219 -14.98870 -14.81556 -14.72328 -14.25095 -13.82728 -13.70754 -13.47772 -13.44404 -13.07765 -12.87224 -12.72759 -12.56703 -12.45024 -12.35145 -12.26546 -12.26155 -12.10342 -12.02447 -11.83123 -11.72232 -11.42751 -11.38822 -11.08208 -10.99638 -10.60437 -10.52208 -8.23046 -6.39713 0.30991 1.37381 1.44814 1.45652 1.53928 2.09890 2.38809 2.74413 3.06740 3.20785 3.63683 3.70509 3.80151 4.05895 4.13382 4.25157 4.33621 4.38673 4.43716 4.48842 4.53369 4.64117 4.69044 4.73579 4.78846 4.87476 4.90644 4.94014 5.02066 5.05918 5.09997 5.12120 5.18701 5.22201 5.26087 5.30451 5.33945 5.39345 5.45224 5.56442 5.63138 5.81497 6.02867 6.61338 7.29307 7.31622 8.82609 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024908 B = 0.004506 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.887976 B = 6211.774719 C = 6981.607234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C -0.070 4.070 4 H 0.061 0.939 5 C -0.107 4.107 6 C -0.119 4.119 7 C -0.110 4.110 8 C -0.107 4.107 9 C 0.011 3.989 10 H 0.099 0.901 11 C 0.180 3.820 12 N -0.415 5.415 13 O 0.048 5.952 14 C 0.232 3.768 15 C 0.127 3.873 16 H 0.053 0.947 17 C -0.126 4.126 18 C -0.544 4.544 19 H 0.049 0.951 20 C 0.033 3.967 21 N -0.904 5.904 22 Si 0.962 3.038 23 H -0.275 1.275 24 H -0.274 1.274 25 H -0.270 1.270 26 N -0.529 5.529 27 H 0.046 0.954 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.015 0.985 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.040 0.960 41 H 0.085 0.915 42 H 0.034 0.966 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.650 12.270 -12.232 18.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.090 4.090 4 H 0.080 0.920 5 C -0.144 4.144 6 C -0.156 4.156 7 C -0.148 4.148 8 C -0.145 4.145 9 C -0.009 4.009 10 H 0.118 0.882 11 C -0.094 4.094 12 N -0.131 5.131 13 O -0.001 6.001 14 C 0.013 3.987 15 C 0.106 3.894 16 H 0.071 0.929 17 C -0.185 4.185 18 C -0.582 4.582 19 H 0.067 0.933 20 C -0.169 4.169 21 N -0.541 5.541 22 Si 0.786 3.214 23 H -0.200 1.200 24 H -0.199 1.199 25 H -0.195 1.195 26 N -0.263 5.263 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.034 0.966 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.104 0.896 42 H 0.053 0.947 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.909 12.745 -12.392 19.456 hybrid contribution -0.099 -1.116 1.141 1.599 sum -8.008 11.629 -11.251 18.054 Atomic orbital electron populations 1.21759 0.93990 1.01900 1.02528 1.21558 0.97499 0.96287 1.00467 1.21173 0.91535 0.96082 1.00188 0.92040 1.21619 1.01895 0.95810 0.95072 1.21572 0.94959 0.96236 1.02819 1.21516 0.96735 1.00961 0.95578 1.21567 1.00242 0.92590 1.00142 1.19865 0.97473 0.95785 0.87817 0.88233 1.26378 0.94738 0.91813 0.96430 1.74450 1.21405 1.16411 1.00844 1.85231 1.49183 1.30782 1.34945 1.29828 0.90343 0.91735 0.86808 1.17606 0.92328 0.85019 0.94407 0.92946 1.21692 0.97626 1.00528 0.98648 1.20985 0.93704 1.11992 1.31568 0.93252 1.25562 0.96956 0.97713 0.96664 1.69929 1.14059 1.27913 1.42175 0.85550 0.78790 0.78258 0.78776 1.20025 1.19873 1.19509 1.71980 1.21796 1.16428 1.16113 0.93509 0.89926 0.92879 0.91172 0.96605 0.89898 0.90733 0.92257 0.89553 0.90222 0.90776 0.92362 0.92582 0.94083 0.89620 0.94711 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.67 71.98 0.70 -2.50 16 2 C -0.12 -3.31 5.25 30.60 0.16 -3.15 16 3 C -0.07 -1.74 1.71 -10.79 -0.02 -1.76 16 4 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 5 C -0.11 -1.78 4.96 30.59 0.15 -1.63 16 6 C -0.12 -1.73 5.92 30.59 0.18 -1.55 16 7 C -0.11 -1.81 5.92 30.59 0.18 -1.63 16 8 C -0.11 -2.58 5.19 30.61 0.16 -2.42 16 9 C 0.01 0.31 2.20 -11.52 -0.03 0.28 16 10 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 11 C 0.18 7.04 5.38 138.46 0.74 7.79 16 12 N -0.42 -17.65 12.16 -60.32 -0.73 -18.38 16 13 O 0.05 2.24 11.31 74.83 0.85 3.09 16 14 C 0.23 11.07 6.96 88.38 0.61 11.68 16 15 C 0.13 6.45 2.77 -12.29 -0.03 6.42 16 16 H 0.05 2.85 8.14 -2.39 -0.02 2.84 16 17 C -0.13 -5.93 8.95 71.98 0.64 -5.28 16 18 C -0.54 -29.56 8.55 25.60 0.22 -29.35 16 19 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 20 C 0.03 1.72 5.30 84.66 0.45 2.17 16 21 N -0.90 -48.71 11.32 21.45 0.24 -48.46 16 22 Si 0.96 42.06 29.54 68.60 2.03 44.09 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 N -0.53 -23.85 11.55 -303.20 -3.50 -27.35 16 27 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.08 1.38 6.57 -2.39 -0.02 1.36 16 29 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.02 0.56 7.05 -2.39 -0.02 0.54 16 32 H 0.08 1.17 6.57 -2.39 -0.02 1.16 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.04 1.85 8.14 -2.38 -0.02 1.84 16 41 H 0.09 4.29 6.07 -2.39 -0.01 4.27 16 42 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 43 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -59.22 340.33 3.98 -55.25 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.97 Total: 12.70 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: 4.12 Total: -20.93 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -3.99 Total: -94.20 kcal Atomic # 8 Polarization: 2.24 SS G_CDS: 0.85 Total: 3.09 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -59.22 3.98 -55.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596603542.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.710 kcal (2) G-P(sol) polarization free energy of solvation -59.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds