Wall clock time and date at job start Tue Mar 31 2020 00:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 H 1.09001 * 109.46922 * 54.99919 * 3 2 1 5 5 C 1.52997 * 109.47232 * 294.99769 * 3 2 1 6 6 C 1.53002 * 109.46817 * 300.00239 * 5 3 2 7 7 C 1.52996 * 109.46972 * 299.99733 * 6 5 3 8 8 C 1.52997 * 109.47131 * 60.00459 * 7 6 5 9 9 C 1.52999 * 109.46991 * 299.99311 * 8 7 6 10 10 H 1.08993 * 109.47839 * 300.00447 * 9 8 7 11 11 C 1.50698 * 109.46824 * 179.97438 * 9 8 7 12 12 N 1.29944 * 126.28972 * 299.68653 * 11 9 8 13 13 O 1.21301 * 110.25068 * 179.84503 * 12 11 9 14 14 C 1.33643 * 109.81031 * 0.43077 * 13 12 11 15 15 C 1.50707 * 126.55032 * 179.71583 * 14 13 12 16 16 H 1.08992 * 109.46741 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.46764 * 300.02717 * 15 14 13 18 18 C 1.50701 * 109.46829 * 60.02433 * 15 14 13 19 19 H 1.07994 * 120.00726 * 359.97438 * 18 15 14 20 20 C 1.37881 * 119.99739 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99923 * 359.97438 * 20 18 15 22 22 Si 1.86791 * 120.00243 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.47359 * 89.99588 * 22 20 18 24 24 H 1.48495 * 109.47501 * 209.99932 * 22 20 18 25 25 H 1.48501 * 109.47226 * 329.99903 * 22 20 18 26 26 N 1.31126 * 106.89953 * 359.73643 * 14 13 12 27 27 H 1.09004 * 109.47134 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46966 * 300.00238 * 1 2 3 29 29 H 1.08998 * 109.46717 * 60.00358 * 1 2 3 30 30 H 1.09002 * 109.47471 * 239.99742 * 2 1 3 31 31 H 1.09006 * 109.46544 * 119.99902 * 2 1 3 32 32 H 1.09002 * 109.47153 * 60.00008 * 5 3 2 33 33 H 1.08996 * 109.46952 * 180.02562 * 5 3 2 34 34 H 1.08996 * 109.47407 * 60.00219 * 6 5 3 35 35 H 1.09000 * 109.46986 * 179.97438 * 6 5 3 36 36 H 1.09001 * 109.46993 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.47380 * 299.99696 * 7 6 5 38 38 H 1.09002 * 109.47153 * 179.97438 * 8 7 6 39 39 H 1.08993 * 109.47194 * 60.00154 * 8 7 6 40 40 H 1.09002 * 109.46677 * 180.02562 * 17 15 14 41 41 H 1.09000 * 109.46971 * 299.99116 * 17 15 14 42 42 H 1.08992 * 109.47755 * 60.00298 * 17 15 14 43 43 H 0.97000 * 120.00292 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 2.2454 1.3698 -2.4889 7 6 3.7702 1.3717 -2.3631 8 6 4.1749 0.6876 -1.0558 9 6 3.5649 1.4444 0.1258 10 1 3.9281 2.4720 0.1258 11 6 3.9630 0.7702 1.4134 12 7 3.6927 -0.4537 1.7564 13 8 4.1548 -0.6946 2.8517 14 6 4.7748 0.3884 3.3300 15 6 5.4739 0.5086 4.6596 16 1 5.8821 1.5136 4.7659 17 6 4.4746 0.2419 5.7871 18 6 6.5929 -0.4983 4.7315 19 1 6.7790 -1.1594 3.8981 20 6 7.3785 -0.5763 5.8619 21 7 7.1517 0.2284 6.8771 22 14 8.7660 -1.8238 5.9509 23 1 10.0145 -1.2138 5.4271 24 1 8.9711 -2.2363 7.3626 25 1 8.4155 -3.0131 5.1336 26 7 4.6582 1.3267 2.4214 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 0.5490 2.1252 -1.3970 33 1 1.9990 3.1540 -1.3075 34 1 1.8821 0.3422 -2.4889 35 1 1.9567 1.8568 -3.4203 36 1 4.2049 0.8330 -3.2051 37 1 4.1335 2.3993 -2.3632 38 1 5.2612 0.6886 -0.9664 39 1 3.8116 -0.3400 -1.0558 40 1 4.9802 0.3292 6.7488 41 1 3.6653 0.9702 5.7351 42 1 4.0665 -0.7632 5.6808 43 1 7.7041 0.1733 7.6726 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596603543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:52 Heat of formation + Delta-G solvation = 29.487783 kcal Electronic energy + Delta-G solvation = -22459.760965 eV Core-core repulsion = 19313.828493 eV Total energy + Delta-G solvation = -3145.932472 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.69673 -39.55514 -35.22381 -34.67475 -33.31857 -32.27124 -30.75117 -29.38940 -29.22002 -25.38145 -24.24554 -23.74102 -23.28583 -21.92925 -21.81672 -19.81918 -18.24236 -17.29792 -16.73655 -16.09478 -15.76928 -15.19788 -14.84878 -14.52461 -14.17654 -13.68561 -13.39076 -13.09864 -12.94847 -12.64971 -12.45587 -12.13575 -11.88490 -11.78322 -11.50998 -11.27437 -11.18854 -11.03686 -11.00883 -10.83714 -10.71863 -10.60911 -10.39226 -10.33609 -10.23796 -10.03571 -9.98926 -9.88158 -9.40995 -8.79940 -8.56986 -6.21679 -4.30801 2.04217 3.03677 3.23870 3.30582 3.35411 3.87142 4.15565 4.31734 4.54249 4.64732 4.83603 4.90771 5.09213 5.11079 5.16466 5.23857 5.30727 5.39841 5.45123 5.54217 5.57234 5.64164 5.71320 5.90339 5.92546 5.98388 6.03501 6.09590 6.10956 6.12671 6.28595 6.36095 6.46296 6.54018 6.60258 6.64742 6.74695 6.88066 6.89986 7.39405 7.62915 7.80874 8.01248 8.68420 9.04652 9.35323 10.84565 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029996 B = 0.004126 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.227247 B = 6784.062585 C = 7130.327452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C -0.078 4.078 4 H 0.070 0.930 5 C -0.112 4.112 6 C -0.122 4.122 7 C -0.116 4.116 8 C -0.113 4.113 9 C 0.015 3.985 10 H 0.094 0.906 11 C 0.164 3.836 12 N -0.403 5.403 13 O 0.063 5.937 14 C 0.243 3.757 15 C 0.125 3.875 16 H 0.074 0.926 17 C -0.138 4.138 18 C -0.522 4.522 19 H 0.062 0.938 20 C 0.070 3.930 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.272 1.272 26 N -0.517 5.517 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.016 0.984 42 H 0.039 0.961 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.824 2.334 -14.035 17.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.174 4.174 3 C -0.097 4.097 4 H 0.088 0.912 5 C -0.150 4.150 6 C -0.159 4.159 7 C -0.153 4.153 8 C -0.151 4.151 9 C -0.005 4.005 10 H 0.112 0.888 11 C -0.109 4.109 12 N -0.117 5.117 13 O 0.010 5.990 14 C 0.024 3.976 15 C 0.104 3.896 16 H 0.092 0.908 17 C -0.196 4.196 18 C -0.561 4.561 19 H 0.080 0.920 20 C -0.133 4.133 21 N -0.522 5.522 22 Si 0.731 3.269 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.196 1.196 26 N -0.251 5.251 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.119 0.881 41 H 0.035 0.965 42 H 0.058 0.942 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.140 2.233 -14.497 17.832 hybrid contribution 0.904 -0.612 0.304 1.133 sum -9.236 1.621 -14.194 17.011 Atomic orbital electron populations 1.21793 0.96350 1.01229 1.01274 1.21932 0.95289 0.96118 1.04034 1.21113 0.93280 0.97317 0.98010 0.91193 1.21564 1.00446 0.99017 0.93924 1.21595 0.95507 1.01058 0.97789 1.21507 0.95920 1.00932 0.96959 1.21595 1.00485 0.99936 0.93080 1.19477 0.95611 0.98941 0.86501 0.88770 1.25575 0.97733 0.89112 0.98440 1.74408 1.20462 1.18364 0.98448 1.85255 1.51801 1.38386 1.23510 1.30104 0.89557 0.79082 0.98808 1.17808 0.92039 1.00751 0.78970 0.90826 1.21847 0.96645 0.98443 1.02706 1.20873 1.13843 1.18992 1.02398 0.92001 1.24875 0.97397 0.95937 0.95086 1.69852 1.39295 1.37407 1.05635 0.86392 0.81793 0.81297 0.77461 1.20413 1.20874 1.19625 1.71966 1.20770 1.30406 1.01930 0.93054 0.93157 0.92931 0.91565 0.89478 0.91513 0.91911 0.91513 0.92193 0.91839 0.91821 0.91770 0.90951 0.88107 0.96489 0.94211 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.67 37.16 0.36 -1.28 16 2 C -0.14 -1.77 4.45 -26.73 -0.12 -1.89 16 3 C -0.08 -0.99 2.18 -90.62 -0.20 -1.18 16 4 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 5 C -0.11 -1.10 5.21 -26.73 -0.14 -1.24 16 6 C -0.12 -1.12 5.65 -26.73 -0.15 -1.27 16 7 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 8 C -0.11 -1.46 4.91 -26.73 -0.13 -1.59 16 9 C 0.01 0.22 2.44 -91.77 -0.22 -0.01 16 10 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 11 C 0.16 3.16 6.57 -156.37 -1.03 2.14 16 12 N -0.40 -8.16 9.43 30.90 0.29 -7.87 16 13 O 0.06 1.41 11.31 18.10 0.20 1.62 16 14 C 0.24 5.60 6.96 -13.06 -0.09 5.51 16 15 C 0.12 3.06 2.77 -92.92 -0.26 2.81 16 16 H 0.07 1.92 8.14 -51.93 -0.42 1.50 16 17 C -0.14 -3.16 8.95 37.16 0.33 -2.83 16 18 C -0.52 -13.81 8.55 -34.44 -0.29 -14.11 16 19 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 20 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 21 N -0.88 -23.61 11.32 55.43 0.63 -22.99 16 22 Si 0.90 20.45 29.54 -169.99 -5.02 15.42 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 N -0.52 -11.42 11.55 -9.87 -0.11 -11.53 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.50 6.56 -51.93 -0.34 0.15 16 30 H 0.07 0.82 4.83 -51.93 -0.25 0.57 16 31 H 0.09 1.40 5.20 -51.93 -0.27 1.12 16 32 H 0.07 0.60 6.57 -51.93 -0.34 0.26 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.63 6.32 -51.93 -0.33 0.30 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.99 6.54 -51.93 -0.34 0.65 16 40 H 0.10 2.47 6.07 -51.93 -0.32 2.16 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 329.83 15.07 4.97 4.97 Total: -1.00 -26.89 329.83 -8.03 -34.92 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.80 Total: -0.02 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -2.19 Total: -14.52 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.80 Total: -42.39 kcal Atomic # 8 Polarization: 1.41 SS G_CDS: 0.20 Total: 1.62 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -26.89 -8.03 -34.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596603543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.411 kcal (2) G-P(sol) polarization free energy of solvation -26.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds