Wall clock time and date at job start Tue Mar 31 2020 00:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46992 * 2 1 4 4 H 1.09001 * 109.46922 * 54.99919 * 3 2 1 5 5 C 1.52997 * 109.47232 * 294.99769 * 3 2 1 6 6 C 1.53002 * 109.46817 * 300.00239 * 5 3 2 7 7 C 1.52996 * 109.46972 * 299.99733 * 6 5 3 8 8 C 1.52997 * 109.47131 * 60.00459 * 7 6 5 9 9 C 1.52999 * 109.46991 * 299.99311 * 8 7 6 10 10 H 1.08993 * 109.47839 * 300.00447 * 9 8 7 11 11 C 1.50698 * 109.46824 * 179.97438 * 9 8 7 12 12 N 1.29944 * 126.28972 * 299.68653 * 11 9 8 13 13 O 1.21301 * 110.25068 * 179.84503 * 12 11 9 14 14 C 1.33643 * 109.81031 * 0.43077 * 13 12 11 15 15 C 1.50707 * 126.55032 * 179.71583 * 14 13 12 16 16 H 1.08992 * 109.46741 * 180.02562 * 15 14 13 17 17 C 1.53001 * 109.46764 * 300.02717 * 15 14 13 18 18 C 1.50701 * 109.46829 * 60.02433 * 15 14 13 19 19 H 1.07994 * 120.00726 * 359.97438 * 18 15 14 20 20 C 1.37881 * 119.99739 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99923 * 359.97438 * 20 18 15 22 22 Si 1.86791 * 120.00243 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.47359 * 89.99588 * 22 20 18 24 24 H 1.48495 * 109.47501 * 209.99932 * 22 20 18 25 25 H 1.48501 * 109.47226 * 329.99903 * 22 20 18 26 26 N 1.31126 * 106.89953 * 359.73643 * 14 13 12 27 27 H 1.09004 * 109.47134 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46966 * 300.00238 * 1 2 3 29 29 H 1.08998 * 109.46717 * 60.00358 * 1 2 3 30 30 H 1.09002 * 109.47471 * 239.99742 * 2 1 3 31 31 H 1.09006 * 109.46544 * 119.99902 * 2 1 3 32 32 H 1.09002 * 109.47153 * 60.00008 * 5 3 2 33 33 H 1.08996 * 109.46952 * 180.02562 * 5 3 2 34 34 H 1.08996 * 109.47407 * 60.00219 * 6 5 3 35 35 H 1.09000 * 109.46986 * 179.97438 * 6 5 3 36 36 H 1.09001 * 109.46993 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.47380 * 299.99696 * 7 6 5 38 38 H 1.09002 * 109.47153 * 179.97438 * 8 7 6 39 39 H 1.08993 * 109.47194 * 60.00154 * 8 7 6 40 40 H 1.09002 * 109.46677 * 180.02562 * 17 15 14 41 41 H 1.09000 * 109.46971 * 299.99116 * 17 15 14 42 42 H 1.08992 * 109.47755 * 60.00298 * 17 15 14 43 43 H 0.97000 * 120.00292 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 2.2454 1.3698 -2.4889 7 6 3.7702 1.3717 -2.3631 8 6 4.1749 0.6876 -1.0558 9 6 3.5649 1.4444 0.1258 10 1 3.9281 2.4720 0.1258 11 6 3.9630 0.7702 1.4134 12 7 3.6927 -0.4537 1.7564 13 8 4.1548 -0.6946 2.8517 14 6 4.7748 0.3884 3.3300 15 6 5.4739 0.5086 4.6596 16 1 5.8821 1.5136 4.7659 17 6 4.4746 0.2419 5.7871 18 6 6.5929 -0.4983 4.7315 19 1 6.7790 -1.1594 3.8981 20 6 7.3785 -0.5763 5.8619 21 7 7.1517 0.2284 6.8771 22 14 8.7660 -1.8238 5.9509 23 1 10.0145 -1.2138 5.4271 24 1 8.9711 -2.2363 7.3626 25 1 8.4155 -3.0131 5.1336 26 7 4.6582 1.3267 2.4214 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 0.5490 2.1252 -1.3970 33 1 1.9990 3.1540 -1.3075 34 1 1.8821 0.3422 -2.4889 35 1 1.9567 1.8568 -3.4203 36 1 4.2049 0.8330 -3.2051 37 1 4.1335 2.3993 -2.3632 38 1 5.2612 0.6886 -0.9664 39 1 3.8116 -0.3400 -1.0558 40 1 4.9802 0.3292 6.7488 41 1 3.6653 0.9702 5.7351 42 1 4.0665 -0.7632 5.6808 43 1 7.7041 0.1733 7.6726 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596603543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:51 Heat of formation + Delta-G solvation = 15.689295 kcal Electronic energy + Delta-G solvation = -22460.359312 eV Core-core repulsion = 19313.828493 eV Total energy + Delta-G solvation = -3146.530819 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -46.37690 -40.56255 -37.04052 -36.38243 -34.25783 -33.96603 -32.23252 -30.87039 -30.23666 -27.38662 -25.56189 -25.18943 -24.55034 -23.38569 -22.80925 -21.37271 -19.33611 -18.95891 -18.42104 -17.96881 -16.95012 -16.79565 -16.00432 -15.71294 -15.52636 -15.13645 -14.83132 -14.29273 -14.01804 -13.86176 -13.59365 -13.44051 -13.40943 -13.07974 -13.04057 -12.88145 -12.60204 -12.44579 -12.36050 -12.25841 -12.17890 -12.10851 -12.04737 -11.76271 -11.57796 -11.38658 -11.19317 -10.94853 -10.90888 -10.59434 -10.49571 -8.22849 -6.39503 0.30977 1.36971 1.43977 1.46135 1.56199 2.09483 2.39258 2.75244 3.07032 3.22800 3.65553 3.72416 3.87541 4.13004 4.15683 4.26046 4.35236 4.39004 4.48009 4.50039 4.62805 4.67365 4.71928 4.76837 4.82736 4.87918 4.89535 4.98433 5.03816 5.08129 5.12630 5.16142 5.18921 5.24829 5.28607 5.38394 5.39905 5.43081 5.51103 5.63118 5.66834 5.81879 6.03135 6.62021 7.29671 7.32267 8.83040 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029996 B = 0.004126 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.227247 B = 6784.062585 C = 7130.327452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C -0.074 4.074 4 H 0.056 0.944 5 C -0.106 4.106 6 C -0.119 4.119 7 C -0.110 4.110 8 C -0.109 4.109 9 C 0.011 3.989 10 H 0.098 0.902 11 C 0.172 3.828 12 N -0.402 5.402 13 O 0.046 5.954 14 C 0.232 3.768 15 C 0.126 3.874 16 H 0.052 0.948 17 C -0.126 4.126 18 C -0.544 4.544 19 H 0.050 0.950 20 C 0.032 3.968 21 N -0.904 5.904 22 Si 0.963 3.037 23 H -0.275 1.275 24 H -0.273 1.273 25 H -0.272 1.272 26 N -0.532 5.532 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.033 0.967 42 H 0.041 0.959 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.565 2.532 -16.026 19.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C -0.093 4.093 4 H 0.075 0.925 5 C -0.144 4.144 6 C -0.156 4.156 7 C -0.147 4.147 8 C -0.147 4.147 9 C -0.009 4.009 10 H 0.116 0.884 11 C -0.101 4.101 12 N -0.118 5.118 13 O -0.003 6.003 14 C 0.014 3.986 15 C 0.106 3.894 16 H 0.070 0.930 17 C -0.185 4.185 18 C -0.582 4.582 19 H 0.069 0.931 20 C -0.170 4.170 21 N -0.542 5.542 22 Si 0.788 3.212 23 H -0.200 1.200 24 H -0.198 1.198 25 H -0.197 1.197 26 N -0.266 5.266 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.887 2.420 -16.472 19.892 hybrid contribution 1.110 -0.637 0.885 1.556 sum -9.776 1.782 -15.587 18.485 Atomic orbital electron populations 1.21760 0.94645 1.01734 1.02041 1.21877 0.96790 0.95963 1.02602 1.21113 0.91315 0.97373 0.99526 0.92520 1.21560 1.01508 0.99112 0.92179 1.21600 0.94473 1.01164 0.98407 1.21501 0.96892 1.01132 0.95225 1.21577 0.99393 0.99624 0.94114 1.19819 0.97449 0.98784 0.84829 0.88404 1.26427 0.95926 0.88686 0.99069 1.74470 1.20619 1.18936 0.97749 1.85245 1.52200 1.38408 1.24454 1.29786 0.90269 0.79798 0.98794 1.17610 0.92270 0.99131 0.80410 0.93000 1.21686 0.96546 0.99039 1.01196 1.21029 1.15097 1.19573 1.02495 0.93132 1.25577 0.99315 0.97486 0.94604 1.69937 1.40017 1.38241 1.05963 0.85470 0.78958 0.79007 0.77777 1.20011 1.19840 1.19651 1.71972 1.21402 1.30659 1.02589 0.92754 0.93774 0.90715 0.90918 0.92899 0.89929 0.91064 0.91646 0.89822 0.90425 0.91014 0.93230 0.91873 0.89656 0.94780 0.94024 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.67 71.98 0.70 -2.21 16 2 C -0.13 -3.36 4.45 30.59 0.14 -3.22 16 3 C -0.07 -1.76 2.18 -10.79 -0.02 -1.79 16 4 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 5 C -0.11 -1.75 5.21 30.59 0.16 -1.59 16 6 C -0.12 -1.74 5.65 30.59 0.17 -1.57 16 7 C -0.11 -1.88 5.92 30.59 0.18 -1.70 16 8 C -0.11 -2.70 4.91 30.59 0.15 -2.55 16 9 C 0.01 0.32 2.44 -11.54 -0.03 0.30 16 10 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 11 C 0.17 6.70 6.57 138.46 0.91 7.61 16 12 N -0.40 -16.61 9.43 -60.32 -0.57 -17.18 16 13 O 0.05 2.11 11.31 74.83 0.85 2.95 16 14 C 0.23 11.03 6.96 88.38 0.61 11.65 16 15 C 0.13 6.40 2.77 -12.28 -0.03 6.37 16 16 H 0.05 2.82 8.14 -2.39 -0.02 2.80 16 17 C -0.13 -5.90 8.95 71.98 0.64 -5.25 16 18 C -0.54 -29.42 8.55 25.60 0.22 -29.21 16 19 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 20 C 0.03 1.66 5.30 84.66 0.45 2.11 16 21 N -0.90 -48.69 11.32 21.45 0.24 -48.44 16 22 Si 0.96 41.94 29.54 68.60 2.03 43.97 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 N -0.53 -24.00 11.55 -303.20 -3.50 -27.50 16 27 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 1.17 6.56 -2.39 -0.02 1.15 16 30 H 0.07 1.69 4.83 -2.39 -0.01 1.68 16 31 H 0.05 1.70 5.20 -2.38 -0.01 1.68 16 32 H 0.08 1.15 6.57 -2.39 -0.02 1.13 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 1.00 6.32 -2.39 -0.02 0.99 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.06 1.68 6.54 -2.39 -0.02 1.66 16 40 H 0.08 4.26 6.07 -2.39 -0.01 4.25 16 41 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -58.34 329.83 4.28 -54.06 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.99 Total: 13.20 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: 4.25 Total: -21.05 kcal Atomic # 7 Polarization: -89.30 SS G_CDS: -3.83 Total: -93.13 kcal Atomic # 8 Polarization: 2.11 SS G_CDS: 0.85 Total: 2.95 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -58.34 4.28 -54.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596603543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.745 kcal (2) G-P(sol) polarization free energy of solvation -58.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds