Wall clock time and date at job start Tue Mar 31 2020 00:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 55.00475 * 3 2 1 5 5 C 1.53006 * 109.47127 * 295.00521 * 3 2 1 6 6 C 1.52999 * 109.46626 * 299.99539 * 5 3 2 7 7 C 1.52997 * 109.47592 * 300.00035 * 6 5 3 8 8 C 1.52996 * 109.47165 * 60.00300 * 7 6 5 9 9 C 1.52997 * 109.47232 * 175.00399 * 3 2 1 10 10 H 1.09000 * 109.47140 * 180.02562 * 9 3 2 11 11 C 1.50696 * 109.47238 * 299.99651 * 9 3 2 12 12 N 1.29956 * 126.28403 * 59.69054 * 11 9 3 13 13 O 1.21305 * 110.24855 * 179.84563 * 12 11 9 14 14 C 1.33645 * 109.81048 * 0.42196 * 13 12 11 15 15 C 1.50696 * 126.54532 * 179.75914 * 14 13 12 16 16 H 1.09002 * 109.46653 * 179.97438 * 15 14 13 17 17 C 1.53002 * 109.47171 * 59.98192 * 15 14 13 18 18 C 1.50696 * 109.47562 * 299.97349 * 15 14 13 19 19 H 1.08001 * 119.99853 * 0.02562 * 18 15 14 20 20 C 1.37877 * 120.00366 * 179.97438 * 18 15 14 21 21 N 1.31515 * 119.99839 * 0.02562 * 20 18 15 22 22 Si 1.86794 * 120.00210 * 180.02562 * 20 18 15 23 23 H 1.48495 * 109.47165 * 90.00569 * 22 20 18 24 24 H 1.48504 * 109.47428 * 210.00663 * 22 20 18 25 25 H 1.48508 * 109.47193 * 330.00472 * 22 20 18 26 26 N 1.31124 * 106.89816 * 359.74131 * 14 13 12 27 27 H 1.08994 * 109.47281 * 59.99487 * 1 2 3 28 28 H 1.09004 * 109.47031 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46818 * 300.00038 * 1 2 3 30 30 H 1.09002 * 109.46818 * 239.99962 * 2 1 3 31 31 H 1.09004 * 109.47686 * 120.00185 * 2 1 3 32 32 H 1.08993 * 109.46955 * 60.00011 * 5 3 2 33 33 H 1.09000 * 109.47050 * 179.97438 * 5 3 2 34 34 H 1.09000 * 109.47160 * 60.00369 * 6 5 3 35 35 H 1.09002 * 109.46719 * 180.02562 * 6 5 3 36 36 H 1.09000 * 109.47140 * 300.00346 * 7 6 5 37 37 H 1.09001 * 109.47375 * 180.02562 * 7 6 5 38 38 H 1.08992 * 109.47534 * 180.02562 * 8 7 6 39 39 H 1.08996 * 109.47134 * 59.99508 * 8 7 6 40 40 H 1.08998 * 109.46689 * 299.99126 * 17 15 14 41 41 H 1.08993 * 109.47489 * 59.99404 * 17 15 14 42 42 H 1.09006 * 109.46898 * 180.02562 * 17 15 14 43 43 H 0.96996 * 119.99951 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 2.2453 1.3700 -2.4889 7 6 3.7701 1.3718 -2.3633 8 6 4.1749 0.6877 -1.0561 9 6 3.5648 1.4443 0.1256 10 1 3.9282 2.4719 0.1261 11 6 3.9636 0.7706 1.4133 12 7 3.6939 -0.4535 1.7564 13 8 4.1564 -0.6941 2.8517 14 6 4.7761 0.3892 3.3296 15 6 5.4763 0.5094 4.6586 16 1 5.8848 1.5145 4.7644 17 6 6.6123 -0.5129 4.7309 18 6 4.4930 0.2473 5.7701 19 1 3.4639 0.0163 5.5373 20 6 4.9071 0.3013 7.0840 21 7 6.1603 0.5821 7.3675 22 14 3.6884 -0.0243 8.4617 23 1 3.6808 -1.4739 8.7835 24 1 4.0850 0.7481 9.6664 25 1 2.3303 0.3942 8.0304 26 7 4.6589 1.3273 2.4210 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 0.5489 2.1253 -1.3968 33 1 1.9982 3.1544 -1.3071 34 1 1.8819 0.3423 -2.4890 35 1 1.9572 1.8576 -3.4203 36 1 4.1334 2.3994 -2.3633 37 1 4.2047 0.8331 -3.2054 38 1 5.2611 0.6893 -0.9663 39 1 3.8115 -0.3399 -1.0560 40 1 6.2038 -1.5179 4.6251 41 1 7.3235 -0.3233 3.9271 42 1 7.1184 -0.4263 5.6925 43 1 6.4516 0.6205 8.2919 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596603544.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:55 Heat of formation + Delta-G solvation = 15.616278 kcal Electronic energy + Delta-G solvation = -22480.795032 eV Core-core repulsion = 19334.261047 eV Total energy + Delta-G solvation = -3146.533985 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.37472 -40.56356 -37.04098 -36.38312 -34.25992 -33.96737 -32.23311 -30.86823 -30.24213 -27.38710 -25.56807 -25.18920 -24.55116 -23.39085 -22.80730 -21.36823 -19.29486 -19.01387 -18.45130 -17.93330 -16.94704 -16.78943 -16.01712 -15.71259 -15.52972 -15.13400 -14.83427 -14.29417 -14.06136 -13.83997 -13.59184 -13.46262 -13.38473 -13.09279 -13.02480 -12.86497 -12.56019 -12.50425 -12.36613 -12.26267 -12.17823 -12.11315 -12.05316 -11.75631 -11.59883 -11.40271 -11.16386 -10.95801 -10.90769 -10.60290 -10.48942 -8.23016 -6.39642 0.30930 1.36915 1.43942 1.45886 1.55333 2.09594 2.38982 2.75295 3.06792 3.22859 3.65281 3.72639 3.87385 4.12852 4.15197 4.25983 4.35233 4.39190 4.47276 4.50259 4.62740 4.67230 4.71757 4.76462 4.82119 4.87978 4.89140 4.98045 5.03902 5.08021 5.12445 5.16284 5.18895 5.24513 5.28465 5.37945 5.39696 5.42640 5.50981 5.62940 5.66227 5.81978 6.03242 6.61802 7.29524 7.32270 8.82850 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027416 B = 0.004323 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.053599 B = 6475.548890 C = 7046.800300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C -0.076 4.076 4 H 0.051 0.949 5 C -0.106 4.106 6 C -0.119 4.119 7 C -0.110 4.110 8 C -0.107 4.107 9 C 0.011 3.989 10 H 0.097 0.903 11 C 0.172 3.828 12 N -0.402 5.402 13 O 0.046 5.954 14 C 0.232 3.768 15 C 0.126 3.874 16 H 0.052 0.948 17 C -0.126 4.126 18 C -0.543 4.543 19 H 0.050 0.950 20 C 0.032 3.968 21 N -0.904 5.904 22 Si 0.963 3.037 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.275 1.275 26 N -0.532 5.532 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.041 0.959 41 H 0.034 0.966 42 H 0.085 0.915 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.032 1.235 -17.800 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C -0.095 4.095 4 H 0.070 0.930 5 C -0.143 4.143 6 C -0.156 4.156 7 C -0.148 4.148 8 C -0.145 4.145 9 C -0.009 4.009 10 H 0.116 0.884 11 C -0.101 4.101 12 N -0.118 5.118 13 O -0.003 6.003 14 C 0.014 3.986 15 C 0.106 3.894 16 H 0.070 0.930 17 C -0.185 4.185 18 C -0.582 4.582 19 H 0.068 0.932 20 C -0.170 4.170 21 N -0.541 5.541 22 Si 0.788 3.212 23 H -0.195 1.195 24 H -0.200 1.200 25 H -0.200 1.200 26 N -0.266 5.266 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.103 0.897 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.274 1.100 -18.284 19.709 hybrid contribution -0.169 -0.187 1.529 1.550 sum -7.443 0.913 -16.755 18.357 Atomic orbital electron populations 1.21763 0.94820 1.01738 1.01928 1.21870 0.96683 0.95953 1.02633 1.21117 0.91627 0.97363 0.99409 0.93049 1.21555 1.01453 0.99120 0.92221 1.21601 0.94666 1.01125 0.98244 1.21505 0.96715 1.01190 0.95351 1.21572 0.99569 0.99563 0.93826 1.19819 0.97219 0.98857 0.84992 0.88438 1.26432 0.95992 0.88709 0.98991 1.74473 1.20283 1.19241 0.97764 1.85245 1.52066 1.38505 1.24488 1.29783 0.90799 0.80106 0.97963 1.17610 0.93014 0.98301 0.80503 0.92996 1.21690 0.96962 0.97404 1.02426 1.21022 0.95228 1.50991 0.90941 0.93203 1.25569 0.97153 0.93792 1.00440 1.69935 1.16342 1.47506 1.20347 0.85476 0.78790 0.78675 0.78285 1.19465 1.20036 1.20036 1.71965 1.21889 1.30233 1.02553 0.90614 0.92678 0.94125 0.90582 0.93034 0.90121 0.91116 0.91598 0.89823 0.91019 0.90217 0.92775 0.91788 0.94030 0.94713 0.89654 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.67 71.98 0.70 -2.42 16 2 C -0.13 -3.45 4.45 30.59 0.14 -3.31 16 3 C -0.08 -1.88 2.18 -10.79 -0.02 -1.91 16 4 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 5 C -0.11 -1.82 5.21 30.60 0.16 -1.66 16 6 C -0.12 -1.73 5.65 30.59 0.17 -1.56 16 7 C -0.11 -1.80 5.92 30.59 0.18 -1.62 16 8 C -0.11 -2.54 4.91 30.59 0.15 -2.39 16 9 C 0.01 0.32 2.44 -11.54 -0.03 0.29 16 10 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 11 C 0.17 6.70 6.57 138.46 0.91 7.61 16 12 N -0.40 -16.60 9.43 -60.27 -0.57 -17.17 16 13 O 0.05 2.11 11.31 74.81 0.85 2.96 16 14 C 0.23 11.04 6.96 88.38 0.61 11.65 16 15 C 0.13 6.40 2.77 -12.29 -0.03 6.36 16 16 H 0.05 2.82 8.14 -2.39 -0.02 2.81 16 17 C -0.13 -5.90 8.95 71.98 0.64 -5.25 16 18 C -0.54 -29.46 8.55 25.60 0.22 -29.24 16 19 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 20 C 0.03 1.68 5.30 84.65 0.45 2.13 16 21 N -0.90 -48.67 11.32 21.45 0.24 -48.43 16 22 Si 0.96 42.02 29.54 68.60 2.03 44.04 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 24 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 26 N -0.53 -24.03 11.55 -303.16 -3.50 -27.53 16 27 H 0.08 1.26 6.56 -2.39 -0.02 1.25 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 1.78 4.83 -2.39 -0.01 1.77 16 31 H 0.05 1.71 5.20 -2.38 -0.01 1.70 16 32 H 0.08 1.20 6.56 -2.39 -0.02 1.18 16 33 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 1.00 6.32 -2.39 -0.02 0.99 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.63 6.54 -2.39 -0.02 1.61 16 40 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.08 4.26 6.07 -2.38 -0.01 4.25 16 43 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -58.45 329.84 4.29 -54.16 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.99 Total: 13.28 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 4.25 Total: -21.31 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -3.83 Total: -93.14 kcal Atomic # 8 Polarization: 2.11 SS G_CDS: 0.85 Total: 2.96 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -58.45 4.29 -54.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596603544.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.776 kcal (2) G-P(sol) polarization free energy of solvation -58.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds