Wall clock time and date at job start Tue Mar 31 2020 00:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47380 * 2 1 4 4 H 1.09009 * 109.47133 * 185.19661 * 3 2 1 5 5 C 1.50703 * 109.47188 * 305.19620 * 3 2 1 6 6 H 1.07994 * 120.00197 * 119.99883 * 5 3 2 7 7 C 1.37876 * 119.99649 * 299.99822 * 5 3 2 8 8 N 1.31521 * 119.99587 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 120.00342 * 0.02562 * 7 5 3 10 10 H 1.48492 * 109.47041 * 89.99861 * 9 7 5 11 11 H 1.48497 * 109.47168 * 210.00046 * 9 7 5 12 12 H 1.48497 * 109.46822 * 329.99827 * 9 7 5 13 13 N 1.46899 * 109.47264 * 65.19403 * 3 2 1 14 14 C 1.46901 * 110.99732 * 88.70169 * 13 3 2 15 15 H 1.09003 * 109.47210 * 322.88383 * 14 13 3 16 16 C 1.53000 * 109.47198 * 82.88605 * 14 13 3 17 17 C 1.53008 * 109.46982 * 202.88533 * 14 13 3 18 18 C 1.50701 * 109.47027 * 65.00130 * 17 14 13 19 19 C 1.38834 * 120.75425 * 269.72129 * 18 17 14 20 20 C 1.38047 * 119.28515 * 179.73094 * 19 18 17 21 21 N 1.31959 * 120.83790 * 0.55242 * 20 19 18 22 22 C 1.32255 * 121.64708 * 359.72386 * 21 20 19 23 23 O 1.35670 * 119.68535 * 180.02562 * 22 21 20 24 24 C 1.42903 * 117.00360 * 359.97421 * 23 22 21 25 25 C 1.38379 * 120.75768 * 89.99999 * 18 17 14 26 26 H 1.09003 * 109.47214 * 58.33378 * 1 2 3 27 27 H 1.09001 * 109.47536 * 178.33458 * 1 2 3 28 28 H 1.09007 * 109.47176 * 298.33731 * 1 2 3 29 29 H 1.09003 * 109.47003 * 239.99818 * 2 1 3 30 30 H 1.09006 * 109.47436 * 120.00440 * 2 1 3 31 31 H 0.97002 * 119.99802 * 180.02562 * 8 7 5 32 32 H 1.00898 * 111.00361 * 212.65306 * 13 3 2 33 33 H 1.09000 * 109.46958 * 299.99614 * 16 14 13 34 34 H 1.08994 * 109.47000 * 59.99902 * 16 14 13 35 35 H 1.09002 * 109.46800 * 180.02562 * 16 14 13 36 36 H 1.09004 * 109.46763 * 184.99970 * 17 14 13 37 37 H 1.08997 * 109.46744 * 305.00119 * 17 14 13 38 38 H 1.08004 * 120.35645 * 359.97438 * 19 18 17 39 39 H 1.08004 * 119.57913 * 180.27609 * 20 19 18 40 40 H 1.08997 * 109.47400 * 180.02562 * 24 23 22 41 41 H 1.08996 * 109.46809 * 300.00560 * 24 23 22 42 42 H 1.09000 * 109.46773 * 60.00156 * 24 23 22 43 43 H 1.07997 * 120.44326 * 359.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1261 1.4438 -0.0931 5 6 1.4354 2.1891 -1.1611 6 1 0.8264 3.0630 -0.9829 7 6 1.6597 1.7564 -2.4508 8 7 1.1317 2.4078 -3.4641 9 14 2.7126 0.2444 -2.7590 10 1 1.8512 -0.9651 -2.7677 11 1 3.3950 0.3756 -4.0714 12 1 3.7284 0.1210 -1.6830 13 7 1.6554 2.0978 1.2572 14 6 2.6771 1.8916 2.2923 15 1 3.0898 0.8869 2.2005 16 6 3.7959 2.9204 2.1168 17 6 2.0433 2.0582 3.6749 18 6 1.0262 0.9683 3.8959 19 6 -0.3012 1.1519 3.5331 20 6 -1.2063 0.1311 3.7442 21 7 -0.8265 -1.0067 4.2941 22 6 0.4275 -1.2171 4.6580 23 8 0.7744 -2.4024 5.2195 24 6 -0.2639 -3.3702 5.3856 25 6 1.3930 -0.2361 4.4702 26 1 -0.3634 0.5395 -0.8747 27 1 -0.3634 -1.0272 -0.0299 28 1 -0.3634 0.4878 0.9046 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.2892 2.1032 -4.3715 32 1 1.4796 3.0809 1.1135 33 1 4.2475 2.8017 1.1319 34 1 3.3832 3.9251 2.2087 35 1 4.5542 2.7671 2.8847 36 1 2.8174 1.9933 4.4396 37 1 1.5534 3.0300 3.7352 38 1 -0.6216 2.0818 3.0870 39 1 -2.2393 0.2671 3.4596 40 1 0.1474 -4.2691 5.8448 41 1 -1.0440 -2.9595 6.0266 42 1 -0.6870 -3.6197 4.4126 43 1 2.4162 -0.4111 4.7681 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602614422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:20 Heat of formation + Delta-G solvation = -8.360024 kcal Electronic energy + Delta-G solvation = -22620.343528 eV Core-core repulsion = 19472.769852 eV Total energy + Delta-G solvation = -3147.573676 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.42039 -38.13208 -37.11925 -34.54130 -32.45463 -31.55538 -30.49404 -29.01969 -27.44478 -26.53109 -26.08186 -23.24274 -23.09443 -21.92777 -20.54205 -19.18429 -17.74718 -16.86979 -16.48690 -15.87495 -15.64013 -15.45539 -14.66902 -14.27647 -14.11523 -13.87621 -13.54376 -13.33531 -13.02406 -12.72395 -12.62055 -12.36063 -12.15402 -11.97025 -11.82830 -11.35161 -11.32867 -11.09814 -10.97120 -10.67168 -10.55992 -10.37768 -10.19318 -9.98245 -9.42486 -9.33175 -9.19222 -8.95234 -8.57633 -8.24490 -7.44959 -6.10927 -4.08764 1.41792 1.58448 3.21270 3.27492 3.36631 3.37472 4.03082 4.38367 4.52266 4.87806 4.92279 5.22201 5.23296 5.29432 5.30666 5.37220 5.39148 5.47122 5.57123 5.59615 5.74731 5.81000 5.92669 6.01312 6.10888 6.18006 6.21126 6.28841 6.33104 6.47356 6.54645 6.68311 6.71806 6.80167 6.97651 7.16508 7.27160 7.40236 7.50352 7.62929 7.93962 8.08486 8.35362 8.60441 8.94006 9.52556 11.01894 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019004 B = 0.005521 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.025278 B = 5069.968846 C = 5629.995161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.109 4.109 3 C 0.188 3.812 4 H 0.001 0.999 5 C -0.511 4.511 6 H 0.078 0.922 7 C 0.075 3.925 8 N -0.898 5.898 9 Si 0.884 3.116 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.270 1.270 13 N -0.667 5.667 14 C 0.086 3.914 15 H 0.071 0.929 16 C -0.179 4.179 17 C -0.071 4.071 18 C 0.020 3.980 19 C -0.170 4.170 20 C 0.131 3.869 21 N -0.548 5.548 22 C 0.310 3.690 23 O -0.315 6.315 24 C 0.043 3.957 25 C -0.195 4.195 26 H 0.067 0.933 27 H 0.014 0.986 28 H 0.057 0.943 29 H 0.036 0.964 30 H 0.029 0.971 31 H 0.263 0.737 32 H 0.339 0.661 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.139 0.861 39 H 0.154 0.846 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.134 -4.302 16.780 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.147 4.147 3 C 0.079 3.921 4 H 0.019 0.981 5 C -0.549 4.549 6 H 0.096 0.904 7 C -0.127 4.127 8 N -0.537 5.537 9 Si 0.715 3.285 10 H -0.205 1.205 11 H -0.227 1.227 12 H -0.195 1.195 13 N -0.298 5.298 14 C -0.025 4.025 15 H 0.090 0.910 16 C -0.238 4.238 17 C -0.109 4.109 18 C 0.013 3.987 19 C -0.190 4.190 20 C -0.023 4.023 21 N -0.272 5.272 22 C 0.131 3.869 23 O -0.222 6.222 24 C -0.052 4.052 25 C -0.216 4.216 26 H 0.086 0.914 27 H 0.034 0.966 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.158 0.842 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.157 0.843 39 H 0.171 0.829 40 H 0.109 0.891 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.913 -5.588 17.018 17.935 hybrid contribution 1.618 0.113 -0.955 1.882 sum 0.705 -5.475 16.063 16.985 Atomic orbital electron populations 1.21495 0.95611 0.97925 1.03103 1.21692 0.97353 0.98234 0.97402 1.19534 0.93693 0.91434 0.87487 0.98111 1.21028 1.31944 1.12991 0.88940 0.90400 1.24863 0.95250 0.96479 0.96136 1.69889 1.44645 1.40201 0.98920 0.86908 0.81094 0.83933 0.76602 1.20477 1.22650 1.19524 1.60586 1.41986 1.18430 1.08768 1.21509 0.90902 0.98731 0.91387 0.91045 1.22495 0.99399 0.99852 1.02042 1.20724 0.96246 0.96499 0.97447 1.19917 0.94577 0.93532 0.90705 1.21830 0.93270 1.01606 1.02308 1.22298 0.99867 0.87246 0.92902 1.67222 1.17210 1.25333 1.17459 1.19705 0.89434 0.86043 0.91669 1.86198 1.37355 1.22629 1.76051 1.22763 0.90549 0.89984 1.01930 1.20849 0.99793 0.93363 1.07602 0.91399 0.96642 0.92433 0.94629 0.95261 0.92666 0.84223 0.92062 0.92543 0.93136 0.91013 0.90362 0.84305 0.82901 0.89145 0.92623 0.92444 0.85015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.50 37.15 0.35 -2.32 16 2 C -0.11 -2.42 5.27 -26.74 -0.14 -2.57 16 3 C 0.19 4.19 1.69 -68.87 -0.12 4.07 16 4 H 0.00 0.03 6.02 -51.92 -0.31 -0.28 16 5 C -0.51 -13.45 7.64 -34.44 -0.26 -13.71 16 6 H 0.08 2.21 7.81 -52.49 -0.41 1.80 16 7 C 0.07 2.09 5.41 -17.82 -0.10 1.99 16 8 N -0.90 -26.74 13.96 55.43 0.77 -25.96 16 9 Si 0.88 22.05 24.32 -169.99 -4.13 17.91 16 10 H -0.28 -6.90 6.92 56.52 0.39 -6.51 16 11 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 12 H -0.27 -6.53 6.53 56.52 0.37 -6.16 16 13 N -0.67 -12.06 4.98 -100.94 -0.50 -12.56 16 14 C 0.09 1.30 2.39 -67.71 -0.16 1.14 16 15 H 0.07 1.19 7.38 -51.93 -0.38 0.81 16 16 C -0.18 -2.48 9.14 37.16 0.34 -2.14 16 17 C -0.07 -0.88 5.07 -27.88 -0.14 -1.03 16 18 C 0.02 0.28 4.97 -104.35 -0.52 -0.24 16 19 C -0.17 -2.36 8.66 -39.43 -0.34 -2.70 16 20 C 0.13 1.84 11.17 -17.57 -0.20 1.64 16 21 N -0.55 -8.39 9.22 -13.33 -0.12 -8.51 16 22 C 0.31 4.75 7.49 -17.12 -0.13 4.63 16 23 O -0.31 -4.50 10.48 -18.71 -0.20 -4.70 16 24 C 0.04 0.47 10.38 101.05 1.05 1.52 16 25 C -0.20 -2.81 9.75 -39.28 -0.38 -3.20 16 26 H 0.07 1.63 6.97 -51.93 -0.36 1.27 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 1.16 6.97 -51.92 -0.36 0.80 16 29 H 0.04 0.85 3.42 -51.93 -0.18 0.67 16 30 H 0.03 0.62 7.65 -51.93 -0.40 0.22 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.34 6.18 7.91 -39.29 -0.31 5.86 16 33 H 0.06 0.98 7.32 -51.93 -0.38 0.60 16 34 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 37 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 38 H 0.14 1.82 8.06 -52.48 -0.42 1.40 16 39 H 0.15 1.76 8.06 -52.48 -0.42 1.34 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.59 8.10 -51.93 -0.42 0.16 16 42 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 43 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 340.95 15.07 5.14 5.14 Total: -1.00 -29.87 340.95 -6.71 -36.58 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -6.92 Total: 5.01 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -0.75 Total: -12.91 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.15 Total: -47.03 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.20 Total: -4.70 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.13 Total: 17.91 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.87 -6.71 -36.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602614422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.215 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds