Wall clock time and date at job start Tue Mar 31 2020 00:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47380 * 2 1 4 4 H 1.09009 * 109.47133 * 185.19661 * 3 2 1 5 5 C 1.50703 * 109.47188 * 305.19620 * 3 2 1 6 6 H 1.07994 * 120.00197 * 119.99883 * 5 3 2 7 7 C 1.37876 * 119.99649 * 299.99822 * 5 3 2 8 8 N 1.31521 * 119.99587 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 120.00342 * 0.02562 * 7 5 3 10 10 H 1.48492 * 109.47041 * 89.99861 * 9 7 5 11 11 H 1.48497 * 109.47168 * 210.00046 * 9 7 5 12 12 H 1.48497 * 109.46822 * 329.99827 * 9 7 5 13 13 N 1.46899 * 109.47264 * 65.19403 * 3 2 1 14 14 C 1.46901 * 110.99732 * 88.70169 * 13 3 2 15 15 H 1.09003 * 109.47210 * 322.88383 * 14 13 3 16 16 C 1.53000 * 109.47198 * 82.88605 * 14 13 3 17 17 C 1.53008 * 109.46982 * 202.88533 * 14 13 3 18 18 C 1.50701 * 109.47027 * 65.00130 * 17 14 13 19 19 C 1.38834 * 120.75425 * 269.72129 * 18 17 14 20 20 C 1.38047 * 119.28515 * 179.73094 * 19 18 17 21 21 N 1.31959 * 120.83790 * 0.55242 * 20 19 18 22 22 C 1.32255 * 121.64708 * 359.72386 * 21 20 19 23 23 O 1.35670 * 119.68535 * 180.02562 * 22 21 20 24 24 C 1.42903 * 117.00360 * 359.97421 * 23 22 21 25 25 C 1.38379 * 120.75768 * 89.99999 * 18 17 14 26 26 H 1.09003 * 109.47214 * 58.33378 * 1 2 3 27 27 H 1.09001 * 109.47536 * 178.33458 * 1 2 3 28 28 H 1.09007 * 109.47176 * 298.33731 * 1 2 3 29 29 H 1.09003 * 109.47003 * 239.99818 * 2 1 3 30 30 H 1.09006 * 109.47436 * 120.00440 * 2 1 3 31 31 H 0.97002 * 119.99802 * 180.02562 * 8 7 5 32 32 H 1.00898 * 111.00361 * 212.65306 * 13 3 2 33 33 H 1.09000 * 109.46958 * 299.99614 * 16 14 13 34 34 H 1.08994 * 109.47000 * 59.99902 * 16 14 13 35 35 H 1.09002 * 109.46800 * 180.02562 * 16 14 13 36 36 H 1.09004 * 109.46763 * 184.99970 * 17 14 13 37 37 H 1.08997 * 109.46744 * 305.00119 * 17 14 13 38 38 H 1.08004 * 120.35645 * 359.97438 * 19 18 17 39 39 H 1.08004 * 119.57913 * 180.27609 * 20 19 18 40 40 H 1.08997 * 109.47400 * 180.02562 * 24 23 22 41 41 H 1.08996 * 109.46809 * 300.00560 * 24 23 22 42 42 H 1.09000 * 109.46773 * 60.00156 * 24 23 22 43 43 H 1.07997 * 120.44326 * 359.97438 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1261 1.4438 -0.0931 5 6 1.4354 2.1891 -1.1611 6 1 0.8264 3.0630 -0.9829 7 6 1.6597 1.7564 -2.4508 8 7 1.1317 2.4078 -3.4641 9 14 2.7126 0.2444 -2.7590 10 1 1.8512 -0.9651 -2.7677 11 1 3.3950 0.3756 -4.0714 12 1 3.7284 0.1210 -1.6830 13 7 1.6554 2.0978 1.2572 14 6 2.6771 1.8916 2.2923 15 1 3.0898 0.8869 2.2005 16 6 3.7959 2.9204 2.1168 17 6 2.0433 2.0582 3.6749 18 6 1.0262 0.9683 3.8959 19 6 -0.3012 1.1519 3.5331 20 6 -1.2063 0.1311 3.7442 21 7 -0.8265 -1.0067 4.2941 22 6 0.4275 -1.2171 4.6580 23 8 0.7744 -2.4024 5.2195 24 6 -0.2639 -3.3702 5.3856 25 6 1.3930 -0.2361 4.4702 26 1 -0.3634 0.5395 -0.8747 27 1 -0.3634 -1.0272 -0.0299 28 1 -0.3634 0.4878 0.9046 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.2892 2.1032 -4.3715 32 1 1.4796 3.0809 1.1135 33 1 4.2475 2.8017 1.1319 34 1 3.3832 3.9251 2.2087 35 1 4.5542 2.7671 2.8847 36 1 2.8174 1.9933 4.4396 37 1 1.5534 3.0300 3.7352 38 1 -0.6216 2.0818 3.0870 39 1 -2.2393 0.2671 3.4596 40 1 0.1474 -4.2691 5.8448 41 1 -1.0440 -2.9595 6.0266 42 1 -0.6870 -3.6197 4.4126 43 1 2.4162 -0.4111 4.7681 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602614422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:19 Heat of formation + Delta-G solvation = -29.008658 kcal Electronic energy + Delta-G solvation = -22621.238920 eV Core-core repulsion = 19472.769852 eV Total energy + Delta-G solvation = -3148.469068 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.47632 -39.31707 -38.44693 -36.05640 -34.02855 -33.27426 -31.53409 -30.50053 -28.44979 -27.99389 -27.45720 -25.02643 -24.24811 -23.08463 -21.89887 -20.79353 -18.87447 -18.41286 -17.92611 -17.27419 -16.88650 -16.68813 -15.99916 -15.57731 -15.50223 -15.09834 -14.90188 -14.79436 -14.57816 -14.46998 -13.87124 -13.72348 -13.54358 -13.09872 -12.91570 -12.82043 -12.49361 -12.48369 -12.40914 -12.18262 -12.05347 -12.01799 -11.80843 -11.67485 -11.21516 -10.91941 -10.70209 -10.50211 -10.30666 -9.31539 -8.95654 -8.27653 -6.26856 0.35399 0.49857 1.28264 1.31864 1.39737 2.24495 2.30819 2.95028 3.09460 3.49199 3.57118 3.86792 4.21754 4.23854 4.30795 4.35679 4.40390 4.45000 4.45223 4.48770 4.51042 4.60022 4.70669 4.74445 4.82519 4.89704 4.93400 5.01563 5.07064 5.14573 5.19574 5.22136 5.36712 5.38435 5.47681 5.63820 5.66158 5.68702 5.76466 6.09358 6.36886 6.59540 6.74171 6.96841 7.01072 7.38406 8.88452 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019004 B = 0.005521 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.025278 B = 5069.968846 C = 5629.995161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.107 4.107 3 C 0.196 3.804 4 H -0.008 1.008 5 C -0.497 4.497 6 H 0.049 0.951 7 C 0.025 3.975 8 N -0.944 5.944 9 Si 0.932 3.068 10 H -0.276 1.276 11 H -0.301 1.301 12 H -0.256 1.256 13 N -0.662 5.662 14 C 0.086 3.914 15 H 0.058 0.942 16 C -0.173 4.173 17 C -0.062 4.062 18 C 0.015 3.985 19 C -0.176 4.176 20 C 0.122 3.878 21 N -0.562 5.562 22 C 0.293 3.707 23 O -0.326 6.326 24 C 0.040 3.960 25 C -0.203 4.203 26 H 0.037 0.963 27 H 0.027 0.973 28 H 0.069 0.931 29 H 0.022 0.978 30 H 0.043 0.957 31 H 0.263 0.737 32 H 0.339 0.661 33 H 0.034 0.966 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.145 0.855 39 H 0.172 0.828 40 H 0.120 0.880 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.668 -4.944 18.831 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.146 4.146 3 C 0.086 3.914 4 H 0.009 0.991 5 C -0.535 4.535 6 H 0.067 0.933 7 C -0.173 4.173 8 N -0.585 5.585 9 Si 0.761 3.239 10 H -0.202 1.202 11 H -0.229 1.229 12 H -0.181 1.181 13 N -0.292 5.292 14 C -0.024 4.024 15 H 0.077 0.923 16 C -0.232 4.232 17 C -0.099 4.099 18 C 0.007 3.993 19 C -0.196 4.196 20 C -0.032 4.032 21 N -0.287 5.287 22 C 0.114 3.886 23 O -0.234 6.234 24 C -0.055 4.055 25 C -0.223 4.223 26 H 0.056 0.944 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.157 0.843 33 H 0.053 0.947 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.163 0.837 39 H 0.190 0.810 40 H 0.138 0.862 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.101 -6.236 19.103 20.096 hybrid contribution 1.315 0.341 -1.505 2.027 sum 1.214 -5.896 17.599 18.599 Atomic orbital electron populations 1.21370 0.95133 0.98388 1.02220 1.21651 0.97699 0.97829 0.97374 1.19286 0.92565 0.91508 0.88002 0.99080 1.21267 1.30212 1.11849 0.90206 0.93292 1.25518 0.96617 0.98950 0.96231 1.70011 1.46932 1.42186 0.99342 0.86107 0.80056 0.81088 0.76615 1.20232 1.22887 1.18088 1.60525 1.43260 1.18120 1.07342 1.21568 0.90705 0.98446 0.91708 0.92337 1.22417 0.99499 0.99895 1.01420 1.20682 0.96575 0.96611 0.96057 1.20118 0.94900 0.93791 0.90469 1.21986 0.93513 1.01819 1.02292 1.22681 1.00939 0.87003 0.92602 1.67247 1.17512 1.25941 1.17959 1.20000 0.89745 0.86703 0.92113 1.86181 1.38548 1.22773 1.75935 1.22963 0.90410 0.90356 1.01738 1.21076 1.00340 0.93351 1.07570 0.94421 0.95391 0.91178 0.95991 0.93788 0.92799 0.84264 0.94685 0.91574 0.90457 0.88402 0.89069 0.83715 0.81049 0.86157 0.92483 0.93316 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.77 9.50 71.98 0.68 -4.08 16 2 C -0.11 -4.62 5.27 30.59 0.16 -4.46 16 3 C 0.20 8.57 1.69 44.17 0.07 8.65 16 4 H -0.01 -0.38 6.02 -2.38 -0.01 -0.40 16 5 C -0.50 -26.37 7.64 25.60 0.20 -26.17 16 6 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 7 C 0.02 1.39 5.41 84.65 0.46 1.85 16 8 N -0.94 -57.44 13.96 21.45 0.30 -57.15 16 9 Si 0.93 45.39 24.32 68.60 1.67 47.05 16 10 H -0.28 -13.23 6.92 99.48 0.69 -12.54 16 11 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 12 H -0.26 -11.80 6.53 99.48 0.65 -11.15 16 13 N -0.66 -22.89 4.98 -473.28 -2.36 -25.25 16 14 C 0.09 2.38 2.39 44.92 0.11 2.49 16 15 H 0.06 1.80 7.38 -2.39 -0.02 1.78 16 16 C -0.17 -4.35 9.14 71.98 0.66 -3.69 16 17 C -0.06 -1.32 5.07 29.85 0.15 -1.17 16 18 C 0.01 0.38 4.97 -19.69 -0.10 0.28 16 19 C -0.18 -4.52 8.66 22.37 0.19 -4.33 16 20 C 0.12 3.21 11.17 84.63 0.95 4.16 16 21 N -0.56 -16.40 9.22 -308.95 -2.85 -19.25 16 22 C 0.29 8.51 7.49 84.79 0.63 9.15 16 23 O -0.33 -8.84 10.48 -89.87 -0.94 -9.78 16 24 C 0.04 0.82 10.38 113.37 1.18 1.99 16 25 C -0.20 -5.38 9.75 22.47 0.22 -5.16 16 26 H 0.04 1.78 6.97 -2.39 -0.02 1.77 16 27 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.07 2.72 6.97 -2.38 -0.02 2.70 16 29 H 0.02 1.01 3.42 -2.39 -0.01 1.00 16 30 H 0.04 1.76 7.65 -2.38 -0.02 1.74 16 31 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.34 11.92 7.91 -89.70 -0.71 11.21 16 33 H 0.03 1.06 7.32 -2.39 -0.02 1.04 16 34 H 0.07 1.53 8.13 -2.39 -0.02 1.51 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.10 1.65 8.10 -2.38 -0.02 1.63 16 37 H 0.09 1.76 8.10 -2.39 -0.02 1.74 16 38 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 39 H 0.17 3.66 8.06 -2.91 -0.02 3.64 16 40 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.06 1.13 8.10 -2.39 -0.02 1.11 16 42 H 0.05 1.06 8.10 -2.39 -0.02 1.05 16 43 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -64.32 340.95 1.59 -62.73 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.21 Total: 22.15 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 5.56 Total: -20.51 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -4.91 Total: -101.64 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.94 Total: -9.78 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.67 Total: 47.05 kcal Total: -64.32 1.59 -62.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602614422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.726 kcal (2) G-P(sol) polarization free energy of solvation -64.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds