Wall clock time and date at job start Tue Mar 31 2020 00:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47134 * 2 1 4 4 H 1.09000 * 109.47052 * 54.37911 * 3 2 1 5 5 C 1.50703 * 109.46892 * 174.37544 * 3 2 1 6 6 H 1.08005 * 119.99808 * 120.00468 * 5 3 2 7 7 C 1.37878 * 120.00148 * 299.99745 * 5 3 2 8 8 N 1.31516 * 120.00129 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00093 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.46910 * 90.00406 * 9 7 5 11 11 H 1.48496 * 109.47415 * 210.00403 * 9 7 5 12 12 H 1.48501 * 109.47090 * 330.00349 * 9 7 5 13 13 N 1.46900 * 109.47358 * 294.37707 * 3 2 1 14 14 C 1.46897 * 111.00042 * 154.30267 * 13 3 2 15 15 H 1.08994 * 109.47168 * 33.92705 * 14 13 3 16 16 C 1.53001 * 109.46820 * 273.92839 * 14 13 3 17 17 C 1.52997 * 109.47246 * 153.93086 * 14 13 3 18 18 C 1.50698 * 109.47040 * 295.00077 * 17 14 13 19 19 C 1.38826 * 120.76287 * 89.99602 * 18 17 14 20 20 C 1.38043 * 119.29325 * 179.97438 * 19 18 17 21 21 N 1.31969 * 120.83602 * 0.02998 * 20 19 18 22 22 C 1.32247 * 121.64242 * 359.97346 * 21 20 19 23 23 O 1.35681 * 119.68384 * 179.72321 * 22 21 20 24 24 C 1.42907 * 116.99727 * 359.97438 * 23 22 21 25 25 C 1.38382 * 120.75379 * 269.97325 * 18 17 14 26 26 H 1.09004 * 109.47578 * 65.44366 * 1 2 3 27 27 H 1.09002 * 109.47567 * 185.44891 * 1 2 3 28 28 H 1.09008 * 109.47247 * 305.44342 * 1 2 3 29 29 H 1.08998 * 109.47068 * 240.00374 * 2 1 3 30 30 H 1.08994 * 109.47233 * 120.00224 * 2 1 3 31 31 H 0.96997 * 120.00180 * 179.97438 * 8 7 5 32 32 H 1.00898 * 110.99530 * 30.34459 * 13 3 2 33 33 H 1.08999 * 109.47143 * 64.74058 * 16 14 13 34 34 H 1.08997 * 109.46935 * 184.74235 * 16 14 13 35 35 H 1.08999 * 109.47132 * 304.74239 * 16 14 13 36 36 H 1.08993 * 109.47610 * 174.99691 * 17 14 13 37 37 H 1.09012 * 109.47117 * 54.99438 * 17 14 13 38 38 H 1.08004 * 120.35438 * 0.02562 * 19 18 17 39 39 H 1.07996 * 119.58568 * 179.97438 * 20 19 18 40 40 H 1.08994 * 109.46920 * 300.00180 * 24 23 22 41 41 H 1.09005 * 109.46804 * 60.00339 * 24 23 22 42 42 H 1.08997 * 109.46703 * 179.97438 * 24 23 22 43 43 H 1.07995 * 120.44396 * 0.04570 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5968 1.9846 0.8354 5 6 3.5405 1.4447 0.1393 6 1 4.1538 1.8866 -0.6322 7 6 4.1305 0.8829 1.2516 8 7 3.3838 0.3445 2.1909 9 14 5.9905 0.8863 1.4245 10 1 6.4200 2.1218 2.1277 11 1 6.4172 -0.3019 2.2063 12 1 6.6130 0.8418 0.0770 13 7 1.6643 2.0948 -1.2615 14 6 1.5676 3.5508 -1.0929 15 1 2.3100 3.8826 -0.3671 16 6 0.1680 3.9145 -0.5934 17 6 1.8244 4.2379 -2.4356 18 6 3.2447 3.9800 -2.8683 19 6 3.5608 2.8729 -3.6439 20 6 4.8718 2.6664 -4.0236 21 7 5.8222 3.5058 -3.6581 22 6 5.5606 4.5712 -2.9196 23 8 6.5694 5.4050 -2.5618 24 6 7.8815 5.0687 -3.0174 25 6 4.2636 4.8418 -2.5018 26 1 -0.3634 0.4271 -0.9347 27 1 -0.3634 -1.0230 0.0976 28 1 -0.3634 0.5960 0.8373 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.7989 -0.0511 2.9732 32 1 0.8022 1.7145 -1.6224 33 1 0.0165 3.4944 0.4009 34 1 0.0686 4.9991 -0.5486 35 1 -0.5784 3.5092 -1.2766 36 1 1.6656 5.3111 -2.3309 37 1 1.1388 3.8405 -3.1841 38 1 2.7891 2.1811 -3.9478 39 1 5.1231 1.8064 -4.6267 40 1 8.1603 4.0886 -2.6304 41 1 7.8929 5.0458 -4.1071 42 1 8.5917 5.8154 -2.6625 43 1 4.0534 5.7125 -1.8985 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602614425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:29 Heat of formation + Delta-G solvation = -15.471999 kcal Electronic energy + Delta-G solvation = -22576.418187 eV Core-core repulsion = 19428.536112 eV Total energy + Delta-G solvation = -3147.882074 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.18673 -37.89653 -36.90439 -34.29720 -32.28343 -31.37312 -30.25780 -28.85200 -27.27446 -26.33315 -26.03289 -22.97731 -22.84600 -21.63653 -20.03349 -19.57519 -17.49768 -16.67504 -16.16499 -15.66093 -15.44308 -15.03953 -14.54955 -14.20363 -13.90503 -13.82759 -13.44695 -13.08242 -12.89499 -12.69214 -12.47629 -11.98705 -11.84160 -11.71045 -11.50828 -11.25663 -11.15089 -11.01827 -10.86796 -10.76779 -10.61894 -10.33953 -9.91944 -9.71172 -9.59430 -9.22353 -9.07284 -8.90885 -8.31402 -8.03060 -7.18071 -5.93189 -3.95870 1.65641 1.81956 3.34790 3.41095 3.42355 3.48129 4.25876 4.48974 4.73823 5.09233 5.13800 5.36150 5.40386 5.47532 5.50005 5.56679 5.60893 5.68613 5.74269 5.77966 5.88609 5.97713 6.09368 6.15528 6.16902 6.19835 6.30812 6.38162 6.42143 6.54184 6.68160 6.84399 6.89871 6.94165 7.10886 7.20958 7.53192 7.62053 7.80843 7.97047 8.30571 8.33427 8.43631 8.79790 9.12957 9.69339 11.12105 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012897 B = 0.007487 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.456399 B = 3738.832987 C = 5137.876756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.222 3.778 4 H 0.002 0.998 5 C -0.484 4.484 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.677 5.677 14 C 0.093 3.907 15 H 0.084 0.916 16 C -0.177 4.177 17 C -0.070 4.070 18 C 0.024 3.976 19 C -0.167 4.167 20 C 0.129 3.871 21 N -0.549 5.549 22 C 0.310 3.690 23 O -0.315 6.315 24 C 0.043 3.957 25 C -0.190 4.190 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.041 0.959 29 H 0.039 0.961 30 H 0.098 0.902 31 H 0.258 0.742 32 H 0.316 0.684 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.135 0.865 39 H 0.151 0.849 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.707 7.170 -10.163 12.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.115 3.885 4 H 0.019 0.981 5 C -0.523 4.523 6 H 0.077 0.923 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.307 5.307 14 C -0.019 4.019 15 H 0.102 0.898 16 C -0.236 4.236 17 C -0.108 4.108 18 C 0.017 3.983 19 C -0.187 4.187 20 C -0.025 4.025 21 N -0.274 5.274 22 C 0.132 3.868 23 O -0.222 6.222 24 C -0.052 4.052 25 C -0.211 4.211 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.116 0.884 31 H 0.068 0.932 32 H 0.133 0.867 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.153 0.847 39 H 0.168 0.832 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.108 0.892 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.158 7.176 -10.322 12.573 hybrid contribution -0.395 -0.123 1.004 1.086 sum -0.552 7.054 -9.318 11.700 Atomic orbital electron populations 1.21872 0.99679 0.99573 0.99451 1.21762 0.91110 1.00558 1.02976 1.19126 0.95252 0.89759 0.84392 0.98068 1.21181 0.91271 1.35870 1.03933 0.92267 1.24906 0.97665 0.95829 0.96002 1.69864 1.34481 1.39841 1.09619 0.86659 0.86439 0.77284 0.78068 1.20942 1.21416 1.19981 1.60777 1.36084 1.01238 1.32629 1.21409 0.95370 0.90565 0.94508 0.89813 1.22503 0.98438 1.00994 1.01647 1.20721 0.91658 0.99917 0.98494 1.19846 0.95274 0.91918 0.91292 1.21722 0.97690 0.98340 1.00979 1.22223 0.88516 0.95747 0.96028 1.67182 1.38128 1.05263 1.16785 1.19679 0.87239 0.88055 0.91834 1.86196 1.16419 1.47746 1.71857 1.22746 0.80996 1.01628 0.99840 1.20820 0.90212 1.03757 1.06312 0.94647 0.94561 0.93989 0.94171 0.88378 0.93224 0.86653 0.92431 0.93063 0.93190 0.91281 0.90938 0.84703 0.83161 0.92488 0.92728 0.89236 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.65 37.16 0.36 -2.40 16 2 C -0.13 -2.86 5.36 -26.73 -0.14 -3.01 16 3 C 0.22 5.25 1.83 -68.86 -0.13 5.13 16 4 H 0.00 0.04 7.23 -51.93 -0.38 -0.33 16 5 C -0.48 -13.13 8.54 -34.44 -0.29 -13.43 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.06 1.56 5.29 -17.82 -0.09 1.46 16 8 N -0.90 -25.57 11.29 55.43 0.63 -24.94 16 9 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 10 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 13 N -0.68 -13.00 5.47 -100.96 -0.55 -13.56 16 14 C 0.09 1.58 2.38 -67.72 -0.16 1.42 16 15 H 0.08 1.71 7.65 -51.93 -0.40 1.31 16 16 C -0.18 -2.60 9.17 37.16 0.34 -2.25 16 17 C -0.07 -1.00 5.07 -27.89 -0.14 -1.14 16 18 C 0.02 0.40 4.97 -104.35 -0.52 -0.12 16 19 C -0.17 -2.70 9.47 -39.44 -0.37 -3.08 16 20 C 0.13 2.13 11.18 -17.56 -0.20 1.94 16 21 N -0.55 -9.93 9.22 -13.33 -0.12 -10.05 16 22 C 0.31 5.65 7.49 -17.12 -0.13 5.52 16 23 O -0.31 -5.36 10.48 -18.74 -0.20 -5.55 16 24 C 0.04 0.58 10.38 101.05 1.05 1.63 16 25 C -0.19 -3.28 9.75 -39.28 -0.38 -3.66 16 26 H 0.03 0.58 6.64 -51.93 -0.34 0.23 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.10 2.57 5.94 -51.93 -0.31 2.26 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.32 5.56 6.25 -39.29 -0.25 5.31 16 33 H 0.06 0.95 7.57 -51.93 -0.39 0.55 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.66 8.04 -51.93 -0.42 0.24 16 36 H 0.07 0.86 8.10 -51.93 -0.42 0.43 16 37 H 0.07 0.93 8.10 -51.92 -0.42 0.51 16 38 H 0.14 1.99 8.06 -52.48 -0.42 1.57 16 39 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 40 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 41 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 350.58 15.07 5.28 5.28 Total: -1.00 -29.90 350.58 -7.89 -37.79 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.09 Total: 5.78 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -0.81 Total: -11.99 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.05 Total: -48.55 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.20 Total: -5.55 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.90 -7.89 -37.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602614425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.320 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds