Wall clock time and date at job start Tue Mar 31 2020 00:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46941 * 2 1 4 4 H 1.08993 * 109.47616 * 54.61318 * 3 2 1 5 5 N 1.46898 * 109.47072 * 294.61088 * 3 2 1 6 6 C 1.46895 * 111.00077 * 98.05231 * 5 3 2 7 7 C 1.52999 * 109.47456 * 184.63980 * 6 5 3 8 8 C 1.50708 * 115.54948 * 270.92467 * 7 6 5 9 9 H 1.08000 * 120.00106 * 144.38285 * 8 7 6 10 10 C 1.37878 * 119.99966 * 324.37905 * 8 7 6 11 11 N 1.31509 * 119.99815 * 170.82320 * 10 8 7 12 12 Si 1.86806 * 119.99924 * 350.82919 * 10 8 7 13 13 H 1.48496 * 109.46985 * 95.34152 * 12 10 8 14 14 H 1.48499 * 109.46688 * 215.34189 * 12 10 8 15 15 H 1.48497 * 109.46967 * 335.33986 * 12 10 8 16 16 C 1.52998 * 117.50164 * 125.21278 * 7 6 5 17 17 C 1.52993 * 60.00285 * 252.51123 * 16 7 6 18 18 C 1.50703 * 109.46809 * 174.61493 * 3 2 1 19 19 C 1.41380 * 128.01215 * 74.05880 * 18 3 2 20 20 C 1.50703 * 126.79745 * 0.02854 * 19 18 3 21 21 N 1.30170 * 106.39670 * 179.89574 * 19 18 3 22 22 O 1.20911 * 111.60838 * 0.39024 * 21 19 18 23 23 C 1.34050 * 111.56666 * 359.74503 * 22 21 19 24 24 C 1.50700 * 126.77765 * 180.02562 * 23 22 21 25 25 H 1.09005 * 109.47468 * 187.00657 * 1 2 3 26 26 H 1.09003 * 109.47322 * 307.00693 * 1 2 3 27 27 H 1.09000 * 109.47537 * 67.00095 * 1 2 3 28 28 H 1.09004 * 109.46614 * 240.00306 * 2 1 3 29 29 H 1.08996 * 109.47366 * 120.00338 * 2 1 3 30 30 H 1.00905 * 111.00327 * 222.00445 * 5 3 2 31 31 H 1.08999 * 109.47458 * 64.63976 * 6 5 3 32 32 H 1.08997 * 109.47058 * 304.64333 * 6 5 3 33 33 H 0.97004 * 119.99818 * 180.02562 * 11 10 8 34 34 H 1.09000 * 117.49705 * 0.02562 * 16 7 6 35 35 H 1.09000 * 117.49745 * 145.01489 * 16 7 6 36 36 H 1.08994 * 117.49903 * 252.51034 * 17 16 7 37 37 H 1.08999 * 117.51762 * 107.47697 * 17 16 7 38 38 H 1.09000 * 109.46743 * 94.89254 * 20 19 18 39 39 H 1.08997 * 109.47103 * 214.88951 * 20 19 18 40 40 H 1.08995 * 109.47308 * 334.89805 * 20 19 18 41 41 H 1.08996 * 109.46847 * 269.99773 * 24 23 22 42 42 H 1.08997 * 109.47343 * 29.99953 * 24 23 22 43 43 H 1.09001 * 109.46797 * 149.99873 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6000 1.9834 0.8377 5 7 1.6593 2.0964 -1.2592 6 6 0.4445 2.9040 -1.0867 7 6 0.0147 3.4742 -2.4399 8 6 0.6135 4.8087 -2.8027 9 1 0.8655 5.0261 -3.8302 10 6 0.8394 5.7522 -1.8230 11 7 1.5231 6.8401 -2.1031 12 14 0.1745 5.4850 -0.0979 13 1 1.2305 4.8773 0.7510 14 1 -0.2369 6.7890 0.4814 15 1 -0.9987 4.5765 -0.1548 16 6 -1.4158 3.1917 -2.9033 17 6 -0.2395 2.4816 -3.5761 18 6 3.5411 1.4445 0.1333 19 6 4.5026 1.1064 -0.8464 20 6 4.2325 0.6635 -2.2613 21 7 5.6675 1.2563 -0.2851 22 8 5.5648 1.6186 0.8639 23 6 4.2812 1.7651 1.2215 24 6 3.7639 2.2010 2.5682 25 1 -0.3634 -1.0200 0.1254 26 1 -0.3634 0.6186 0.8207 27 1 -0.3634 0.4015 -0.9459 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.4176 2.6562 -1.6196 31 1 0.6472 3.7222 -0.3956 32 1 -0.3534 2.2791 -0.6857 33 1 1.6824 7.5037 -1.4137 34 1 -2.0508 2.6001 -2.2439 35 1 -1.9242 3.9713 -3.4705 36 1 0.0260 2.7939 -4.5861 37 1 -0.1001 1.4224 -3.3597 38 1 4.2802 1.5252 -2.9271 39 1 4.9810 -0.0696 -2.5617 40 1 3.2409 0.2147 -2.3185 41 1 3.6128 1.3257 3.1999 42 1 4.4879 2.8672 3.0373 43 1 2.8167 2.7252 2.4411 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602808147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:56 Heat of formation + Delta-G solvation = 86.672115 kcal Electronic energy + Delta-G solvation = -23112.269399 eV Core-core repulsion = 19968.816625 eV Total energy + Delta-G solvation = -3143.452773 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.76111 -38.19814 -36.34464 -33.94164 -33.16970 -32.23667 -31.59571 -28.55286 -28.28295 -26.86427 -25.71019 -23.57723 -22.29544 -21.31661 -20.29088 -20.04040 -19.01394 -17.49561 -16.95749 -16.31528 -15.91830 -15.33527 -14.79999 -14.03301 -13.76368 -13.53021 -13.38665 -13.17399 -13.07681 -12.99078 -12.85630 -12.64237 -12.54675 -12.21015 -11.99468 -11.88799 -11.35474 -11.23375 -10.89965 -10.82918 -10.58547 -10.44792 -10.35108 -9.90552 -9.65136 -9.42717 -9.17733 -8.98559 -8.85460 -8.37119 -7.74914 -6.19179 -4.12792 1.57500 2.37647 3.11075 3.21704 3.29663 3.32654 4.26594 4.29137 4.53041 4.58316 4.90405 4.95441 5.12504 5.23844 5.28164 5.33162 5.37412 5.44721 5.51925 5.71063 5.75920 5.77713 5.80588 5.83942 5.90454 5.95038 6.05286 6.07605 6.11904 6.17386 6.28370 6.38118 6.46237 6.52983 6.59651 6.67246 6.82788 7.01342 7.25094 7.58602 7.70973 7.94054 8.44262 8.48166 8.87014 9.44106 10.92777 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015152 B = 0.007261 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.551818 B = 3855.281449 C = 4314.684882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 C 0.161 3.839 4 H 0.054 0.946 5 N -0.664 5.664 6 C 0.087 3.913 7 C 0.010 3.990 8 C -0.480 4.480 9 H 0.077 0.923 10 C 0.069 3.931 11 N -0.892 5.892 12 Si 0.902 3.098 13 H -0.290 1.290 14 H -0.303 1.303 15 H -0.265 1.265 16 C -0.210 4.210 17 C -0.169 4.169 18 C -0.202 4.202 19 C 0.043 3.957 20 C -0.076 4.076 21 N -0.374 5.374 22 O 0.091 5.909 23 C -0.033 4.033 24 C -0.074 4.074 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.353 0.647 31 H 0.018 0.982 32 H 0.064 0.936 33 H 0.265 0.735 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.420 -13.002 7.983 15.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.140 4.140 3 C 0.050 3.950 4 H 0.072 0.928 5 N -0.297 5.297 6 C -0.040 4.040 7 C 0.009 3.991 8 C -0.517 4.517 9 H 0.095 0.905 10 C -0.133 4.133 11 N -0.528 5.528 12 Si 0.736 3.264 13 H -0.219 1.219 14 H -0.232 1.232 15 H -0.190 1.190 16 C -0.249 4.249 17 C -0.207 4.207 18 C -0.206 4.206 19 C -0.116 4.116 20 C -0.134 4.134 21 N -0.081 5.081 22 O 0.028 5.972 23 C -0.097 4.097 24 C -0.131 4.131 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.172 0.828 31 H 0.035 0.965 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.423 -13.510 7.388 15.588 hybrid contribution -0.712 0.921 1.533 1.925 sum 1.710 -12.589 8.921 15.524 Atomic orbital electron populations 1.21836 0.95652 1.00732 1.02610 1.21495 0.95974 0.94973 1.01519 1.19882 0.85635 0.96265 0.93185 0.92766 1.60652 1.08059 1.36459 1.24481 1.22140 0.91666 0.93199 0.97026 1.19242 0.93804 0.95366 0.90729 1.20465 1.39744 0.95367 0.96167 0.90509 1.25068 0.94161 0.95213 0.98851 1.69909 1.38182 1.10338 1.34399 0.86628 0.79616 0.75640 0.84561 1.21913 1.23158 1.19045 1.23148 0.92745 1.03435 1.05524 1.22593 1.03664 0.96803 0.97638 1.21238 0.98098 1.08130 0.93160 1.23443 0.87736 1.00993 0.99469 1.20257 1.03321 1.02015 0.87788 1.73791 1.23413 1.18317 0.92577 1.84770 1.26585 1.63632 1.22203 1.24199 0.83843 1.02765 0.98918 1.20329 1.01745 1.02206 0.88835 0.93301 0.93476 0.91096 0.91091 0.92738 0.82761 0.96458 0.91788 0.92552 0.91673 0.90014 0.90575 0.90307 0.89706 0.91398 0.88801 0.89505 0.89852 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.56 37.16 0.32 -1.58 16 2 C -0.10 -1.30 5.59 -26.73 -0.15 -1.45 16 3 C 0.16 2.45 2.53 -68.87 -0.17 2.28 16 4 H 0.05 0.86 6.67 -51.93 -0.35 0.51 16 5 N -0.66 -11.78 5.22 -107.96 -0.56 -12.34 16 6 C 0.09 1.77 3.66 -3.83 -0.01 1.75 16 7 C 0.01 0.22 1.53 -155.66 -0.24 -0.02 16 8 C -0.48 -13.05 9.60 -34.44 -0.33 -13.38 16 9 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 10 C 0.07 1.94 5.44 -17.82 -0.10 1.84 16 11 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 12 Si 0.90 21.72 24.31 -169.99 -4.13 17.59 16 13 H -0.29 -6.74 6.91 56.52 0.39 -6.35 16 14 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 15 H -0.27 -6.09 6.42 56.52 0.36 -5.73 16 16 C -0.21 -4.32 9.88 -26.74 -0.26 -4.58 16 17 C -0.17 -3.37 9.76 -26.73 -0.26 -3.63 16 18 C -0.20 -3.12 4.88 -104.42 -0.51 -3.63 16 19 C 0.04 0.68 7.05 -82.10 -0.58 0.10 16 20 C -0.08 -1.04 9.55 36.01 0.34 -0.70 16 21 N -0.37 -6.30 12.07 33.42 0.40 -5.90 16 22 O 0.09 1.44 11.20 17.15 0.19 1.63 16 23 C -0.03 -0.48 7.49 -35.30 -0.26 -0.74 16 24 C -0.07 -0.78 10.25 36.01 0.37 -0.41 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.59 8.02 -51.93 -0.42 0.17 16 27 H 0.07 1.00 6.66 -51.93 -0.35 0.66 16 28 H 0.07 0.92 6.99 -51.93 -0.36 0.55 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.35 6.99 7.63 -39.29 -0.30 6.69 16 31 H 0.02 0.40 1.84 -51.93 -0.10 0.31 16 32 H 0.06 1.19 5.32 -51.93 -0.28 0.92 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.06 1.22 8.04 -51.93 -0.42 0.80 16 35 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 36 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 37 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 1.22 6.69 -51.93 -0.35 0.88 16 41 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 0.99 7.28 -51.93 -0.38 0.61 16 LS Contribution 337.75 15.07 5.09 5.09 Total: -1.00 -29.61 337.75 -6.79 -36.39 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.70 Total: 7.51 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -1.85 Total: -24.15 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.61 Total: -44.06 kcal Atomic # 8 Polarization: 1.44 SS G_CDS: 0.19 Total: 1.63 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.13 Total: 17.59 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.61 -6.79 -36.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602808147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.066 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds