Wall clock time and date at job start Tue Mar 31 2020 00:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46941 * 2 1 4 4 H 1.08993 * 109.47616 * 54.61318 * 3 2 1 5 5 N 1.46898 * 109.47072 * 294.61088 * 3 2 1 6 6 C 1.46895 * 111.00077 * 98.05231 * 5 3 2 7 7 C 1.52999 * 109.47456 * 184.63980 * 6 5 3 8 8 C 1.50708 * 115.54948 * 270.92467 * 7 6 5 9 9 H 1.08000 * 120.00106 * 144.38285 * 8 7 6 10 10 C 1.37878 * 119.99966 * 324.37905 * 8 7 6 11 11 N 1.31509 * 119.99815 * 170.82320 * 10 8 7 12 12 Si 1.86806 * 119.99924 * 350.82919 * 10 8 7 13 13 H 1.48496 * 109.46985 * 95.34152 * 12 10 8 14 14 H 1.48499 * 109.46688 * 215.34189 * 12 10 8 15 15 H 1.48497 * 109.46967 * 335.33986 * 12 10 8 16 16 C 1.52998 * 117.50164 * 125.21278 * 7 6 5 17 17 C 1.52993 * 60.00285 * 252.51123 * 16 7 6 18 18 C 1.50703 * 109.46809 * 174.61493 * 3 2 1 19 19 C 1.41380 * 128.01215 * 74.05880 * 18 3 2 20 20 C 1.50703 * 126.79745 * 0.02854 * 19 18 3 21 21 N 1.30170 * 106.39670 * 179.89574 * 19 18 3 22 22 O 1.20911 * 111.60838 * 0.39024 * 21 19 18 23 23 C 1.34050 * 111.56666 * 359.74503 * 22 21 19 24 24 C 1.50700 * 126.77765 * 180.02562 * 23 22 21 25 25 H 1.09005 * 109.47468 * 187.00657 * 1 2 3 26 26 H 1.09003 * 109.47322 * 307.00693 * 1 2 3 27 27 H 1.09000 * 109.47537 * 67.00095 * 1 2 3 28 28 H 1.09004 * 109.46614 * 240.00306 * 2 1 3 29 29 H 1.08996 * 109.47366 * 120.00338 * 2 1 3 30 30 H 1.00905 * 111.00327 * 222.00445 * 5 3 2 31 31 H 1.08999 * 109.47458 * 64.63976 * 6 5 3 32 32 H 1.08997 * 109.47058 * 304.64333 * 6 5 3 33 33 H 0.97004 * 119.99818 * 180.02562 * 11 10 8 34 34 H 1.09000 * 117.49705 * 0.02562 * 16 7 6 35 35 H 1.09000 * 117.49745 * 145.01489 * 16 7 6 36 36 H 1.08994 * 117.49903 * 252.51034 * 17 16 7 37 37 H 1.08999 * 117.51762 * 107.47697 * 17 16 7 38 38 H 1.09000 * 109.46743 * 94.89254 * 20 19 18 39 39 H 1.08997 * 109.47103 * 214.88951 * 20 19 18 40 40 H 1.08995 * 109.47308 * 334.89805 * 20 19 18 41 41 H 1.08996 * 109.46847 * 269.99773 * 24 23 22 42 42 H 1.08997 * 109.47343 * 29.99953 * 24 23 22 43 43 H 1.09001 * 109.46797 * 149.99873 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6000 1.9834 0.8377 5 7 1.6593 2.0964 -1.2592 6 6 0.4445 2.9040 -1.0867 7 6 0.0147 3.4742 -2.4399 8 6 0.6135 4.8087 -2.8027 9 1 0.8655 5.0261 -3.8302 10 6 0.8394 5.7522 -1.8230 11 7 1.5231 6.8401 -2.1031 12 14 0.1745 5.4850 -0.0979 13 1 1.2305 4.8773 0.7510 14 1 -0.2369 6.7890 0.4814 15 1 -0.9987 4.5765 -0.1548 16 6 -1.4158 3.1917 -2.9033 17 6 -0.2395 2.4816 -3.5761 18 6 3.5411 1.4445 0.1333 19 6 4.5026 1.1064 -0.8464 20 6 4.2325 0.6635 -2.2613 21 7 5.6675 1.2563 -0.2851 22 8 5.5648 1.6186 0.8639 23 6 4.2812 1.7651 1.2215 24 6 3.7639 2.2010 2.5682 25 1 -0.3634 -1.0200 0.1254 26 1 -0.3634 0.6186 0.8207 27 1 -0.3634 0.4015 -0.9459 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.4176 2.6562 -1.6196 31 1 0.6472 3.7222 -0.3956 32 1 -0.3534 2.2791 -0.6857 33 1 1.6824 7.5037 -1.4137 34 1 -2.0508 2.6001 -2.2439 35 1 -1.9242 3.9713 -3.4705 36 1 0.0260 2.7939 -4.5861 37 1 -0.1001 1.4224 -3.3597 38 1 4.2802 1.5252 -2.9271 39 1 4.9810 -0.0696 -2.5617 40 1 3.2409 0.2147 -2.3185 41 1 3.6128 1.3257 3.1999 42 1 4.4879 2.8672 3.0373 43 1 2.8167 2.7252 2.4411 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602808147.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:49:55 Heat of formation + Delta-G solvation = 68.396389 kcal Electronic energy + Delta-G solvation = -23113.061893 eV Core-core repulsion = 19968.816625 eV Total energy + Delta-G solvation = -3144.245268 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.94348 -39.63551 -37.80641 -35.12812 -34.34573 -34.24524 -32.79429 -29.67624 -29.42888 -28.33321 -27.32543 -25.06786 -23.38169 -22.93144 -21.52264 -21.18756 -20.78993 -18.69832 -18.43426 -17.91285 -17.60176 -16.56227 -16.22052 -15.47098 -15.12159 -14.92715 -14.77687 -14.39787 -14.31094 -14.15214 -13.98932 -13.92832 -13.65912 -13.53620 -13.27658 -13.21370 -12.85271 -12.42252 -12.35548 -12.20212 -12.01420 -11.97685 -11.74256 -11.49475 -11.24019 -11.09200 -10.78767 -10.57399 -10.31016 -10.10985 -9.20561 -8.33269 -6.30570 0.44761 1.19111 1.20679 1.35034 1.45672 2.15338 2.28328 2.85641 3.07895 3.30096 3.52453 3.68023 3.86687 3.97830 4.11033 4.19745 4.27162 4.35603 4.38889 4.51648 4.57926 4.60501 4.64390 4.70598 4.73113 4.76882 4.81271 4.89266 4.91357 5.03965 5.07039 5.12521 5.16527 5.19614 5.24596 5.34153 5.46626 5.55727 5.63859 5.71730 6.18138 6.34124 6.38341 6.72627 7.28313 7.29410 8.82562 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015152 B = 0.007261 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.551818 B = 3855.281449 C = 4314.684882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C 0.163 3.837 4 H 0.055 0.945 5 N -0.658 5.658 6 C 0.095 3.905 7 C -0.017 4.017 8 C -0.483 4.483 9 H 0.028 0.972 10 C 0.012 3.988 11 N -0.946 5.946 12 Si 0.968 3.032 13 H -0.277 1.277 14 H -0.313 1.313 15 H -0.241 1.241 16 C -0.199 4.199 17 C -0.150 4.150 18 C -0.222 4.222 19 C 0.034 3.966 20 C -0.072 4.072 21 N -0.400 5.400 22 O 0.083 5.917 23 C -0.027 4.027 24 C -0.075 4.075 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.337 0.663 31 H -0.001 1.001 32 H 0.089 0.911 33 H 0.264 0.736 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.097 0.903 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.000 -15.604 10.213 18.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C 0.053 3.947 4 H 0.073 0.927 5 N -0.288 5.288 6 C -0.033 4.033 7 C -0.019 4.019 8 C -0.520 4.520 9 H 0.046 0.954 10 C -0.185 4.185 11 N -0.585 5.585 12 Si 0.798 3.202 13 H -0.205 1.205 14 H -0.243 1.243 15 H -0.165 1.165 16 C -0.237 4.237 17 C -0.188 4.188 18 C -0.227 4.227 19 C -0.125 4.125 20 C -0.130 4.130 21 N -0.109 5.109 22 O 0.022 5.978 23 C -0.092 4.092 24 C -0.132 4.132 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.155 0.845 31 H 0.016 0.984 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.124 0.876 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.119 0.881 41 H 0.135 0.865 42 H 0.116 0.884 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.990 -16.153 9.618 18.826 hybrid contribution -0.227 1.723 0.726 1.884 sum 0.763 -14.430 10.344 17.771 Atomic orbital electron populations 1.21817 0.95034 1.01992 1.01836 1.21456 0.96381 0.93172 1.02284 1.19985 0.85534 0.97392 0.91772 0.92698 1.60689 1.06848 1.35244 1.26041 1.22015 0.93292 0.93113 0.94842 1.19193 0.95462 0.93937 0.93264 1.20660 1.39396 0.97965 0.93997 0.95386 1.25906 0.94424 0.94751 1.03447 1.70073 1.40640 1.11857 1.35928 0.85565 0.80007 0.75373 0.79276 1.20482 1.24284 1.16487 1.23161 0.92052 1.03232 1.05267 1.22587 1.02445 0.97598 0.96159 1.21367 0.98317 1.09407 0.93585 1.23809 0.87770 1.00624 1.00300 1.20271 1.04183 1.01861 0.86658 1.73777 1.24191 1.19708 0.93241 1.84738 1.27435 1.63740 1.21915 1.24900 0.83110 1.00986 1.00166 1.20553 1.01661 1.03752 0.87223 0.91351 0.93229 0.92533 0.91208 0.91122 0.84532 0.98429 0.89274 0.92721 0.88565 0.91262 0.91833 0.87607 0.90821 0.90043 0.88062 0.86476 0.88436 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 8.56 71.98 0.62 -2.49 16 2 C -0.09 -2.10 5.59 30.59 0.17 -1.93 16 3 C 0.16 4.53 2.53 44.17 0.11 4.64 16 4 H 0.06 1.54 6.67 -2.39 -0.02 1.53 16 5 N -0.66 -22.05 5.22 -495.48 -2.59 -24.63 16 6 C 0.10 3.60 3.66 86.30 0.32 3.92 16 7 C -0.02 -0.76 1.53 -52.93 -0.08 -0.84 16 8 C -0.48 -26.95 9.60 25.60 0.25 -26.71 16 9 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 10 C 0.01 0.67 5.44 84.66 0.46 1.13 16 11 N -0.95 -58.73 13.96 21.45 0.30 -58.44 16 12 Si 0.97 44.68 24.31 68.60 1.67 46.35 16 13 H -0.28 -12.04 6.91 99.48 0.69 -11.35 16 14 H -0.31 -14.82 7.11 99.48 0.71 -14.11 16 15 H -0.24 -10.06 6.42 99.48 0.64 -9.42 16 16 C -0.20 -7.66 9.88 30.59 0.30 -7.36 16 17 C -0.15 -5.70 9.76 30.59 0.30 -5.40 16 18 C -0.22 -6.48 4.88 -19.73 -0.10 -6.58 16 19 C 0.03 1.05 7.05 43.58 0.31 1.36 16 20 C -0.07 -1.93 9.55 71.24 0.68 -1.25 16 21 N -0.40 -13.32 12.07 -49.57 -0.60 -13.91 16 22 O 0.08 2.54 11.20 71.55 0.80 3.34 16 23 C -0.03 -0.73 7.49 25.04 0.19 -0.55 16 24 C -0.07 -1.34 10.25 71.24 0.73 -0.61 16 25 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.05 1.01 8.02 -2.39 -0.02 0.99 16 27 H 0.06 1.34 6.66 -2.39 -0.02 1.33 16 28 H 0.07 1.57 6.99 -2.38 -0.02 1.56 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.34 13.22 7.63 -89.69 -0.68 12.53 16 31 H 0.00 -0.06 1.84 -2.39 0.00 -0.06 16 32 H 0.09 2.93 5.32 -2.39 -0.01 2.92 16 33 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 34 H 0.10 3.14 8.04 -2.39 -0.02 3.12 16 35 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 39 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.10 2.50 6.69 -2.39 -0.02 2.48 16 41 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.09 1.64 7.28 -2.39 -0.02 1.63 16 Total: -1.00 -66.36 337.75 4.08 -62.28 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 0.24 Total: 27.67 kcal Atomic # 6 Polarization: -46.91 SS G_CDS: 4.25 Total: -42.66 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -2.89 Total: -96.98 kcal Atomic # 8 Polarization: 2.54 SS G_CDS: 0.80 Total: 3.34 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.67 Total: 46.35 kcal Total: -66.36 4.08 -62.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602808147.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.676 kcal (2) G-P(sol) polarization free energy of solvation -66.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds