Wall clock time and date at job start Tue Mar 31 2020 00:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47190 * 2 1 4 4 C 1.52999 * 109.47239 * 119.99544 * 2 1 3 5 5 N 1.46903 * 109.46981 * 65.74287 * 4 2 1 6 6 C 1.46907 * 110.99902 * 211.43984 * 5 4 2 7 7 C 1.50701 * 109.47070 * 66.04636 * 6 5 4 8 8 H 1.07996 * 119.99849 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99629 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00200 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99664 * 179.97438 * 9 7 6 12 12 H 1.48493 * 109.47314 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46774 * 120.00663 * 11 9 7 14 14 H 1.48505 * 109.47241 * 240.00176 * 11 9 7 15 15 C 1.46893 * 110.99965 * 87.48338 * 5 4 2 16 16 C 1.50696 * 109.47598 * 287.17545 * 15 5 4 17 17 C 1.40196 * 120.36646 * 281.02030 * 16 15 5 18 18 C 1.35353 * 119.94939 * 179.97438 * 17 16 15 19 19 N 1.35762 * 120.70179 * 359.97438 * 18 17 16 20 20 C 1.46494 * 119.62444 * 179.97438 * 19 18 17 21 21 C 1.34665 * 120.74692 * 0.02562 * 19 18 17 22 22 O 1.22060 * 119.98181 * 179.97438 * 21 19 18 23 23 C 1.36398 * 120.36854 * 101.27350 * 16 15 5 24 24 H 1.09001 * 109.47145 * 300.00646 * 1 2 3 25 25 H 1.09005 * 109.47096 * 59.99900 * 1 2 3 26 26 H 1.09001 * 109.47365 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47462 * 239.99788 * 2 1 3 28 28 H 1.09002 * 109.47156 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46952 * 299.99561 * 3 2 1 30 30 H 1.08993 * 109.47491 * 59.99906 * 3 2 1 31 31 H 1.09003 * 109.47116 * 305.74725 * 4 2 1 32 32 H 1.08997 * 109.47349 * 185.74435 * 4 2 1 33 33 H 1.09001 * 109.46712 * 186.04646 * 6 5 4 34 34 H 1.08993 * 109.47093 * 306.04593 * 6 5 4 35 35 H 0.97002 * 120.00005 * 180.02562 * 10 9 7 36 36 H 1.09000 * 109.47154 * 167.17151 * 15 5 4 37 37 H 1.09001 * 109.47182 * 47.18030 * 15 5 4 38 38 H 1.08004 * 120.02430 * 359.96818 * 17 16 15 39 39 H 1.07996 * 119.64863 * 179.97438 * 18 17 16 40 40 H 1.09004 * 109.46821 * 270.02239 * 20 19 18 41 41 H 1.08999 * 109.47195 * 30.02260 * 20 19 18 42 42 H 1.09000 * 109.46952 * 150.02483 * 20 19 18 43 43 H 1.07996 * 120.34915 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6667 -2.1404 1.1821 6 6 1.4369 -2.6885 2.5256 7 6 0.2281 -2.0284 3.1373 8 1 -0.3148 -1.2767 2.5837 9 6 -0.1846 -2.3843 4.4038 10 7 0.4768 -3.2994 5.0781 11 14 -1.6826 -1.5656 5.1624 12 1 -2.2440 -0.5777 4.2065 13 1 -2.7077 -2.5956 5.4684 14 1 -1.2871 -0.8733 6.4153 15 6 2.6839 -2.9187 0.4629 16 6 2.6050 -2.6092 -1.0099 17 6 1.6150 -3.2014 -1.8065 18 6 1.5516 -2.9170 -3.1283 19 7 2.4387 -2.0605 -3.6964 20 6 2.3487 -1.7699 -5.1294 21 6 3.4009 -1.4758 -2.9576 22 8 4.1915 -0.7083 -3.4829 23 6 3.4992 -1.7537 -1.5836 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.5950 -0.2701 2.1363 32 1 3.1251 -0.6329 1.3022 33 1 1.2677 -3.7630 2.4555 34 1 2.3098 -2.4980 3.1499 35 1 0.1862 -3.5500 5.9690 36 1 2.5062 -3.9825 0.6206 37 1 3.6736 -2.6565 0.8368 38 1 0.9035 -3.8841 -1.3659 39 1 0.7873 -3.3763 -3.7375 40 1 2.9576 -2.4842 -5.6838 41 1 1.3106 -1.8500 -5.4519 42 1 2.7111 -0.7595 -5.3187 43 1 4.2712 -1.2906 -0.9871 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739914264.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:28 Heat of formation + Delta-G solvation = -5.139545 kcal Electronic energy + Delta-G solvation = -22675.083786 eV Core-core repulsion = 19527.649761 eV Total energy + Delta-G solvation = -3147.434025 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.22279 -37.96721 -36.61435 -34.66375 -33.89345 -32.30824 -29.92756 -28.63937 -26.92205 -26.55384 -25.95751 -23.98732 -23.47293 -21.45008 -20.40942 -19.36181 -17.33879 -17.26266 -16.43677 -15.98654 -15.77234 -15.13082 -14.56050 -14.24096 -14.15129 -13.96207 -13.40648 -13.38055 -13.22515 -12.88075 -12.41448 -12.32624 -11.92667 -11.82070 -11.72798 -11.68072 -11.40581 -11.25525 -10.95228 -10.75681 -10.70775 -10.45692 -10.26678 -9.97404 -9.92600 -9.67404 -9.35249 -9.06571 -8.46863 -7.78413 -7.31451 -6.05128 -4.05700 0.97004 2.05055 2.72539 3.29232 3.37343 3.41787 3.77210 4.41240 4.57947 4.64783 4.86800 5.03218 5.08738 5.19376 5.30975 5.37983 5.47503 5.49861 5.52126 5.58962 5.81493 5.85826 6.01801 6.07638 6.13098 6.17688 6.21942 6.35949 6.40707 6.52707 6.58685 6.64952 6.66905 6.72605 6.99971 7.05083 7.16035 7.25836 7.32647 7.79976 8.04186 8.15812 8.16647 8.50078 9.03188 9.58644 11.05761 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025055 B = 0.004753 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.293146 B = 5889.753727 C = 6177.346433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.101 4.101 3 C -0.144 4.144 4 C 0.065 3.935 5 N -0.524 5.524 6 C 0.193 3.807 7 C -0.504 4.504 8 H 0.067 0.933 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.894 3.106 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.286 1.286 15 C 0.078 3.922 16 C 0.047 3.953 17 C -0.194 4.194 18 C 0.112 3.888 19 N -0.503 5.503 20 C 0.062 3.938 21 C 0.515 3.485 22 O -0.567 6.567 23 C -0.248 4.248 24 H 0.047 0.953 25 H 0.030 0.970 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.021 0.979 33 H 0.031 0.969 34 H -0.009 1.009 35 H 0.260 0.740 36 H 0.085 0.915 37 H 0.039 0.961 38 H 0.149 0.851 39 H 0.159 0.841 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.409 0.600 -16.347 16.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.119 4.119 3 C -0.202 4.202 4 C -0.063 4.063 5 N -0.248 5.248 6 C 0.069 3.931 7 C -0.542 4.542 8 H 0.086 0.914 9 C -0.145 4.145 10 N -0.539 5.539 11 Si 0.722 3.278 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.212 1.212 15 C -0.050 4.050 16 C 0.043 3.957 17 C -0.218 4.218 18 C -0.013 4.013 19 N -0.215 5.215 20 C -0.080 4.080 21 C 0.319 3.681 22 O -0.452 6.452 23 C -0.271 4.271 24 H 0.066 0.934 25 H 0.049 0.951 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.040 0.960 33 H 0.049 0.951 34 H 0.009 0.991 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.057 0.943 38 H 0.166 0.834 39 H 0.176 0.824 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.109 0.891 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.460 0.959 -16.787 16.878 hybrid contribution -0.163 0.363 1.069 1.140 sum 1.297 1.322 -15.718 15.827 Atomic orbital electron populations 1.21647 0.95109 1.02532 0.99446 1.21368 0.96505 0.94689 0.99370 1.21797 1.00382 0.97103 1.00907 1.22154 0.96544 0.89264 0.98339 1.62044 1.40123 1.01332 1.21292 1.19789 0.95986 0.95649 0.81701 1.21213 1.11442 1.22054 0.99523 0.91439 1.24967 0.97114 0.95314 0.97137 1.69965 1.40082 1.31402 1.12407 0.86498 0.82817 0.79352 0.79113 1.19628 1.21077 1.21183 1.21255 0.95173 0.99734 0.88869 1.20314 0.89919 0.89116 0.96390 1.20643 1.02736 1.06579 0.91811 1.21854 0.92824 0.91419 0.95221 1.45323 1.27319 1.37987 1.10875 1.22064 1.03055 1.04087 0.78779 1.17071 0.81030 0.81942 0.88092 1.90914 1.42216 1.38259 1.73762 1.21901 1.05429 1.06078 0.93686 0.93358 0.95108 0.91161 0.90912 0.93396 0.93584 0.92986 0.89795 0.96050 0.95104 0.99102 0.93016 0.89708 0.94257 0.83377 0.82397 0.91055 0.89992 0.89101 0.84022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 9.08 37.15 0.34 -1.88 16 2 C -0.10 -1.69 2.79 -90.62 -0.25 -1.94 16 3 C -0.14 -2.20 9.19 37.16 0.34 -1.86 16 4 C 0.07 1.24 4.09 -3.82 -0.02 1.22 16 5 N -0.52 -10.32 3.86 -237.52 -0.92 -11.23 16 6 C 0.19 4.71 4.68 -4.97 -0.02 4.68 16 7 C -0.50 -13.37 8.13 -34.44 -0.28 -13.65 16 8 H 0.07 1.78 7.49 -52.49 -0.39 1.39 16 9 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -25.89 13.29 55.43 0.74 -25.16 16 11 Si 0.89 21.12 29.54 -169.99 -5.02 16.09 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 C 0.08 1.29 5.12 -4.98 -0.03 1.26 16 16 C 0.05 0.69 3.68 -104.55 -0.38 0.30 16 17 C -0.19 -2.38 9.74 -39.88 -0.39 -2.77 16 18 C 0.11 1.13 10.28 -16.84 -0.17 0.95 16 19 N -0.50 -5.98 2.99 -127.20 -0.38 -6.36 16 20 C 0.06 0.52 10.36 59.84 0.62 1.14 16 21 C 0.52 8.07 7.39 -15.44 -0.11 7.95 16 22 O -0.57 -10.63 16.64 4.86 0.08 -10.55 16 23 C -0.25 -3.81 7.41 -39.38 -0.29 -4.10 16 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 1.29 7.78 -51.93 -0.40 0.89 16 27 H 0.07 1.22 3.93 -51.93 -0.20 1.02 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.80 6.64 -51.93 -0.34 1.45 16 32 H 0.02 0.39 7.55 -51.93 -0.39 0.00 16 33 H 0.03 0.80 7.85 -51.93 -0.41 0.39 16 34 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.08 1.36 7.79 -51.93 -0.40 0.95 16 37 H 0.04 0.65 7.57 -51.93 -0.39 0.26 16 38 H 0.15 1.69 8.06 -52.48 -0.42 1.27 16 39 H 0.16 0.94 8.04 -52.49 -0.42 0.52 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.44 8.01 -51.93 -0.42 0.02 16 42 H 0.09 0.90 7.39 -51.93 -0.38 0.51 16 43 H 0.14 2.22 8.03 -52.49 -0.42 1.80 16 LS Contribution 346.45 15.07 5.22 5.22 Total: -1.00 -31.57 346.45 -8.13 -39.70 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.10 Total: -0.48 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -0.75 Total: -7.24 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -0.56 Total: -42.75 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.08 Total: -10.55 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.57 -8.13 -39.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739914264.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.561 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds