Wall clock time and date at job start Tue Mar 31 2020 00:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47096 * 2 1 4 4 C 1.52999 * 109.47331 * 120.00601 * 2 1 3 5 5 N 1.46494 * 109.47210 * 174.10883 * 4 2 1 6 6 C 1.46499 * 120.00138 * 276.68118 * 5 4 2 7 7 C 1.50698 * 109.47167 * 270.00541 * 6 5 4 8 8 H 1.07996 * 120.00394 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99890 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00049 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00073 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47139 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47336 * 119.99271 * 11 9 7 14 14 H 1.48497 * 109.47325 * 239.99635 * 11 9 7 15 15 C 1.34779 * 120.00225 * 96.68182 * 5 4 2 16 16 O 1.21275 * 120.00103 * 185.40445 * 15 5 4 17 17 C 1.50700 * 119.99774 * 5.40901 * 15 5 4 18 18 C 1.53002 * 109.47029 * 174.69320 * 17 15 5 19 19 N 1.46504 * 109.46925 * 179.97438 * 18 17 15 20 20 C 1.36344 * 125.63232 * 90.00380 * 19 18 17 21 21 C 1.34848 * 108.21658 * 179.97438 * 20 19 18 22 22 C 1.40895 * 107.41821 * 359.97438 * 21 20 19 23 23 C 1.34846 * 107.41439 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.47038 * 299.99348 * 1 2 3 25 25 H 1.08997 * 109.47341 * 59.99905 * 1 2 3 26 26 H 1.09001 * 109.47043 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46563 * 240.00117 * 2 1 3 28 28 H 1.08998 * 109.47045 * 184.70856 * 3 2 1 29 29 H 1.08999 * 109.47170 * 304.71250 * 3 2 1 30 30 H 1.09002 * 109.46706 * 64.71520 * 3 2 1 31 31 H 1.09004 * 109.47095 * 54.10409 * 4 2 1 32 32 H 1.09003 * 109.46747 * 294.11005 * 4 2 1 33 33 H 1.09002 * 109.46563 * 30.00007 * 6 5 4 34 34 H 1.08995 * 109.47419 * 150.00111 * 6 5 4 35 35 H 0.96999 * 120.00200 * 180.02562 * 10 9 7 36 36 H 1.08993 * 109.47667 * 54.68874 * 17 15 5 37 37 H 1.09006 * 109.46891 * 294.69139 * 17 15 5 38 38 H 1.09004 * 109.47080 * 59.99753 * 18 17 15 39 39 H 1.08993 * 109.47025 * 299.99316 * 18 17 15 40 40 H 1.07998 * 125.88871 * 359.70356 * 20 19 18 41 41 H 1.08003 * 126.29213 * 180.02562 * 21 20 19 42 42 H 1.07996 * 126.28890 * 180.02562 * 22 21 20 43 43 H 1.08004 * 125.88569 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.4982 -0.8453 1.1803 6 6 4.1051 -1.9449 0.4262 7 6 4.2994 -3.1307 1.3356 8 1 4.0012 -3.0711 2.3719 9 6 4.8591 -4.2914 0.8450 10 7 5.2228 -4.3638 -0.4167 11 14 5.1007 -5.7610 1.9725 12 1 4.6136 -5.4253 3.3346 13 1 4.3370 -6.9204 1.4451 14 1 6.5438 -6.1056 2.0343 15 6 4.2813 0.0522 1.8109 16 8 5.4855 0.0081 1.6741 17 6 3.6606 1.1105 2.6859 18 6 4.7648 1.9091 3.3816 19 7 4.1613 2.9384 4.2318 20 6 3.8149 2.7840 5.5414 21 6 3.2924 3.9475 5.9792 22 6 3.3178 4.8536 4.9006 23 6 3.8543 4.2090 3.8446 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 3.1267 1.4436 -0.0844 29 1 1.6094 1.9801 -0.8448 30 1 1.7473 1.9313 0.9292 31 1 1.5931 -1.7141 1.3034 32 1 1.7654 -0.1503 2.1360 33 1 3.4504 -2.2238 -0.3996 34 1 5.0705 -1.6265 0.0329 35 1 5.6161 -5.1805 -0.7620 36 1 3.0275 0.6365 3.4359 37 1 3.0581 1.7811 2.0732 38 1 5.3979 2.3832 2.6315 39 1 5.3672 1.2386 3.9943 40 1 3.9339 1.8837 6.1259 41 1 2.9232 4.1483 6.9742 42 1 2.9713 5.8763 4.9166 43 1 4.0139 4.6274 2.8618 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746174746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:52 Heat of formation + Delta-G solvation = 0.833860 kcal Electronic energy + Delta-G solvation = -22089.374216 eV Core-core repulsion = 18942.199217 eV Total energy + Delta-G solvation = -3147.174999 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.07598 -39.38023 -36.43909 -34.14161 -33.50261 -32.33540 -29.80720 -28.72314 -27.49144 -27.10193 -25.68020 -24.25117 -22.27954 -20.40634 -20.28492 -19.86738 -18.31445 -17.54052 -16.53577 -16.16566 -15.59924 -15.41298 -14.65032 -14.41851 -14.17478 -14.00136 -13.51625 -13.43665 -13.00151 -12.82019 -12.43896 -12.32405 -12.29080 -12.05554 -12.01011 -11.80308 -11.73594 -11.33988 -11.15580 -10.96215 -10.86807 -10.78282 -10.59642 -10.43552 -10.18446 -9.65399 -9.09016 -8.54592 -8.48618 -8.11956 -7.71838 -6.09596 -4.14750 2.33622 2.97649 3.09607 3.25756 3.27013 3.34006 3.37781 3.90706 4.40119 4.81170 4.88763 4.93245 5.00352 5.08285 5.15385 5.24705 5.26993 5.36518 5.43403 5.45634 5.63340 5.65743 5.67817 5.76253 5.80912 5.86298 5.95634 6.02502 6.12693 6.22258 6.30834 6.36459 6.39623 6.50636 6.99632 7.04170 7.30493 7.39151 7.43912 7.47377 7.86576 8.17621 8.33007 8.82191 8.98514 9.50711 10.98433 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016103 B = 0.004772 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.397921 B = 5865.817369 C = 6911.882621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.148 4.148 4 C 0.114 3.886 5 N -0.592 5.592 6 C 0.246 3.754 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.512 3.488 16 O -0.546 6.546 17 C -0.166 4.166 18 C 0.120 3.880 19 N -0.443 5.443 20 C -0.014 4.014 21 C -0.208 4.208 22 C -0.208 4.208 23 C -0.015 4.015 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.158 0.842 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.498 13.991 5.614 17.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C -0.205 4.205 4 C -0.010 4.010 5 N -0.322 5.322 6 C 0.127 3.873 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.725 3.275 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.298 3.702 16 O -0.425 6.425 17 C -0.207 4.207 18 C -0.002 4.002 19 N -0.118 5.118 20 C -0.145 4.145 21 C -0.233 4.233 22 C -0.232 4.232 23 C -0.146 4.146 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.176 0.824 41 H 0.149 0.851 42 H 0.149 0.851 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -7.611 13.541 5.168 16.370 hybrid contribution 0.012 -0.977 0.535 1.114 sum -7.599 12.564 5.702 15.751 Atomic orbital electron populations 1.21761 0.94942 1.01895 1.01431 1.21554 0.95506 0.96428 1.00096 1.21966 1.01368 0.96097 1.01088 1.21573 0.81625 1.01191 0.96652 1.48173 1.05327 1.27819 1.50898 1.19282 0.94529 0.82496 0.91038 1.21459 1.41217 0.97295 0.96721 0.92463 1.24930 0.95184 0.98743 0.95173 1.69938 1.41951 1.27841 1.13475 0.86456 0.77977 0.82285 0.80781 1.19822 1.20915 1.20854 1.19989 0.87154 0.82166 0.80850 1.90680 1.14431 1.73712 1.63663 1.22288 0.99632 0.98428 1.00341 1.21625 0.94754 0.89407 0.94428 1.44313 1.47170 1.10559 1.09790 1.21879 1.06777 1.00659 0.85137 1.20852 1.08814 0.93972 0.99614 1.20848 1.08740 0.99988 0.93665 1.21842 1.07219 0.85144 1.00372 0.92865 0.92780 0.92399 0.90362 0.92585 0.92842 0.92825 0.90110 0.91480 0.94984 0.93753 0.92730 0.89003 0.88105 0.88439 0.88537 0.82412 0.85093 0.85107 0.82472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.19 37.16 0.34 -1.20 16 2 C -0.12 -1.57 3.11 -90.62 -0.28 -1.85 16 3 C -0.15 -1.82 7.59 37.16 0.28 -1.54 16 4 C 0.11 1.77 4.89 -4.05 -0.02 1.75 16 5 N -0.59 -11.86 2.26 -175.07 -0.40 -12.26 16 6 C 0.25 6.22 5.22 -5.20 -0.03 6.20 16 7 C -0.53 -14.62 9.39 -34.44 -0.32 -14.94 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 11 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 15 C 0.51 9.94 6.45 -10.98 -0.07 9.87 16 16 O -0.55 -12.87 15.54 5.56 0.09 -12.79 16 17 C -0.17 -2.34 4.38 -27.88 -0.12 -2.46 16 18 C 0.12 1.60 5.39 -4.04 -0.02 1.58 16 19 N -0.44 -5.61 2.75 -117.13 -0.32 -5.94 16 20 C -0.01 -0.17 11.43 -16.75 -0.19 -0.37 16 21 C -0.21 -2.49 10.86 -39.78 -0.43 -2.92 16 22 C -0.21 -2.45 10.86 -39.78 -0.43 -2.88 16 23 C -0.02 -0.18 11.43 -16.75 -0.19 -0.38 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.21 8.01 -51.93 -0.42 0.80 16 28 H 0.06 0.80 6.87 -51.93 -0.36 0.44 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.59 6.49 -51.93 -0.34 0.25 16 31 H 0.08 1.33 8.12 -51.93 -0.42 0.91 16 32 H 0.07 0.89 6.10 -51.93 -0.32 0.57 16 33 H 0.03 0.83 7.94 -51.93 -0.41 0.41 16 34 H 0.04 1.28 7.35 -51.93 -0.38 0.90 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.09 1.22 7.37 -51.93 -0.38 0.84 16 37 H 0.10 1.27 4.80 -51.93 -0.25 1.02 16 38 H 0.10 1.31 8.04 -51.93 -0.42 0.90 16 39 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.13 1.32 8.06 -52.48 -0.42 0.90 16 42 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.16 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 350.49 15.07 5.28 5.28 Total: -1.00 -31.78 350.49 -8.26 -40.04 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -7.04 Total: 2.05 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -1.59 Total: -7.49 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: 0.02 Total: -43.61 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.09 Total: -12.79 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.78 -8.26 -40.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746174746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.877 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds