Wall clock time and date at job start Tue Mar 31 2020 00:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47096 * 2 1 4 4 C 1.52999 * 109.47331 * 120.00601 * 2 1 3 5 5 N 1.46494 * 109.47210 * 174.10883 * 4 2 1 6 6 C 1.46499 * 120.00138 * 276.68118 * 5 4 2 7 7 C 1.50698 * 109.47167 * 270.00541 * 6 5 4 8 8 H 1.07996 * 120.00394 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99890 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00049 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00073 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47139 * 359.97438 * 11 9 7 13 13 H 1.48506 * 109.47336 * 119.99271 * 11 9 7 14 14 H 1.48497 * 109.47325 * 239.99635 * 11 9 7 15 15 C 1.34779 * 120.00225 * 96.68182 * 5 4 2 16 16 O 1.21275 * 120.00103 * 185.40445 * 15 5 4 17 17 C 1.50700 * 119.99774 * 5.40901 * 15 5 4 18 18 C 1.53002 * 109.47029 * 174.69320 * 17 15 5 19 19 N 1.46504 * 109.46925 * 179.97438 * 18 17 15 20 20 C 1.36344 * 125.63232 * 90.00380 * 19 18 17 21 21 C 1.34848 * 108.21658 * 179.97438 * 20 19 18 22 22 C 1.40895 * 107.41821 * 359.97438 * 21 20 19 23 23 C 1.34846 * 107.41439 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.47038 * 299.99348 * 1 2 3 25 25 H 1.08997 * 109.47341 * 59.99905 * 1 2 3 26 26 H 1.09001 * 109.47043 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46563 * 240.00117 * 2 1 3 28 28 H 1.08998 * 109.47045 * 184.70856 * 3 2 1 29 29 H 1.08999 * 109.47170 * 304.71250 * 3 2 1 30 30 H 1.09002 * 109.46706 * 64.71520 * 3 2 1 31 31 H 1.09004 * 109.47095 * 54.10409 * 4 2 1 32 32 H 1.09003 * 109.46747 * 294.11005 * 4 2 1 33 33 H 1.09002 * 109.46563 * 30.00007 * 6 5 4 34 34 H 1.08995 * 109.47419 * 150.00111 * 6 5 4 35 35 H 0.96999 * 120.00200 * 180.02562 * 10 9 7 36 36 H 1.08993 * 109.47667 * 54.68874 * 17 15 5 37 37 H 1.09006 * 109.46891 * 294.69139 * 17 15 5 38 38 H 1.09004 * 109.47080 * 59.99753 * 18 17 15 39 39 H 1.08993 * 109.47025 * 299.99316 * 18 17 15 40 40 H 1.07998 * 125.88871 * 359.70356 * 20 19 18 41 41 H 1.08003 * 126.29213 * 180.02562 * 21 20 19 42 42 H 1.07996 * 126.28890 * 180.02562 * 22 21 20 43 43 H 1.08004 * 125.88569 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 1.2491 5 7 3.4982 -0.8453 1.1803 6 6 4.1051 -1.9449 0.4262 7 6 4.2994 -3.1307 1.3356 8 1 4.0012 -3.0711 2.3719 9 6 4.8591 -4.2914 0.8450 10 7 5.2228 -4.3638 -0.4167 11 14 5.1007 -5.7610 1.9725 12 1 4.6136 -5.4253 3.3346 13 1 4.3370 -6.9204 1.4451 14 1 6.5438 -6.1056 2.0343 15 6 4.2813 0.0522 1.8109 16 8 5.4855 0.0081 1.6741 17 6 3.6606 1.1105 2.6859 18 6 4.7648 1.9091 3.3816 19 7 4.1613 2.9384 4.2318 20 6 3.8149 2.7840 5.5414 21 6 3.2924 3.9475 5.9792 22 6 3.3178 4.8536 4.9006 23 6 3.8543 4.2090 3.8446 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8901 28 1 3.1267 1.4436 -0.0844 29 1 1.6094 1.9801 -0.8448 30 1 1.7473 1.9313 0.9292 31 1 1.5931 -1.7141 1.3034 32 1 1.7654 -0.1503 2.1360 33 1 3.4504 -2.2238 -0.3996 34 1 5.0705 -1.6265 0.0329 35 1 5.6161 -5.1805 -0.7620 36 1 3.0275 0.6365 3.4359 37 1 3.0581 1.7811 2.0732 38 1 5.3979 2.3832 2.6315 39 1 5.3672 1.2386 3.9943 40 1 3.9339 1.8837 6.1259 41 1 2.9232 4.1483 6.9742 42 1 2.9713 5.8763 4.9166 43 1 4.0139 4.6274 2.8618 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746174746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:51 Heat of formation + Delta-G solvation = -16.033849 kcal Electronic energy + Delta-G solvation = -22090.105655 eV Core-core repulsion = 18942.199217 eV Total energy + Delta-G solvation = -3147.906438 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.01970 -40.89390 -37.82131 -35.67185 -34.84227 -34.15427 -31.06799 -29.60078 -29.27166 -28.06653 -26.98412 -25.80285 -23.93192 -21.46047 -21.29485 -20.78860 -19.80877 -18.68553 -18.60269 -17.42905 -17.22389 -16.83866 -16.30533 -15.57186 -15.41233 -15.22452 -14.63084 -14.53967 -14.47893 -14.00917 -13.90053 -13.70920 -13.41320 -13.28386 -13.10608 -12.90364 -12.85672 -12.79388 -12.76482 -12.53284 -12.35771 -12.20435 -12.01342 -11.84314 -11.62164 -11.53092 -10.70501 -10.66781 -9.49752 -9.43541 -9.01432 -8.24362 -6.39453 1.35304 1.37295 1.41155 1.48981 1.73780 1.93046 2.21497 2.32921 2.50422 3.05547 3.62504 3.72842 3.79594 3.89649 4.01869 4.22499 4.28471 4.33055 4.39502 4.44945 4.54233 4.69199 4.74062 4.79379 4.83780 4.84325 4.90391 5.01032 5.02642 5.04824 5.21865 5.26490 5.38491 5.45615 5.47140 5.48704 5.56191 5.82154 6.03990 6.16612 6.40855 6.51544 6.66882 6.75494 7.24954 7.41415 8.82886 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016103 B = 0.004772 C = 0.004050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.397921 B = 5865.817369 C = 6911.882621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 C -0.143 4.143 4 C 0.110 3.890 5 N -0.596 5.596 6 C 0.263 3.737 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.009 3.991 10 N -0.928 5.928 11 Si 0.967 3.033 12 H -0.266 1.266 13 H -0.270 1.270 14 H -0.282 1.282 15 C 0.506 3.494 16 O -0.596 6.596 17 C -0.145 4.145 18 C 0.128 3.872 19 N -0.448 5.448 20 C -0.030 4.030 21 C -0.215 4.215 22 C -0.216 4.216 23 C -0.025 4.025 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.019 0.981 34 H -0.002 1.002 35 H 0.267 0.733 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.171 0.829 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.452 15.026 7.276 19.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.133 4.133 3 C -0.200 4.200 4 C -0.013 4.013 5 N -0.326 5.326 6 C 0.142 3.858 7 C -0.582 4.582 8 H 0.073 0.927 9 C -0.190 4.190 10 N -0.568 5.568 11 Si 0.791 3.209 12 H -0.190 1.190 13 H -0.196 1.196 14 H -0.208 1.208 15 C 0.295 3.705 16 O -0.478 6.478 17 C -0.185 4.185 18 C 0.005 3.995 19 N -0.124 5.124 20 C -0.160 4.160 21 C -0.240 4.240 22 C -0.241 4.241 23 C -0.155 4.155 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.118 0.882 33 H 0.037 0.963 34 H 0.016 0.984 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.141 0.859 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.188 0.812 41 H 0.164 0.836 42 H 0.166 0.834 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -9.616 14.604 6.846 18.778 hybrid contribution 0.618 -1.238 -0.004 1.384 sum -8.999 13.366 6.842 17.505 Atomic orbital electron populations 1.21711 0.92259 1.02269 1.03074 1.21503 0.97613 0.96636 0.97549 1.21926 0.99661 0.95428 1.03001 1.21865 0.78595 1.01597 0.99231 1.48138 1.07432 1.26688 1.50331 1.18682 0.92421 0.83690 0.91024 1.21738 1.41350 0.98277 0.96790 0.92693 1.25847 0.94696 1.01823 0.96674 1.70058 1.42585 1.28841 1.15280 0.85378 0.77849 0.78693 0.78955 1.18972 1.19551 1.20791 1.20889 0.86570 0.82544 0.80489 1.90651 1.16824 1.75105 1.65259 1.22158 0.99768 0.96892 0.99719 1.21412 0.94324 0.89467 0.94269 1.44275 1.47653 1.10597 1.09867 1.22226 1.07044 1.01536 0.85165 1.21169 1.08482 0.93893 1.00457 1.21173 1.08520 1.00841 0.93536 1.22257 1.06989 0.84822 1.01418 0.90824 0.91504 0.92736 0.93430 0.95194 0.91185 0.90631 0.91254 0.88166 0.96323 0.98350 0.92421 0.87329 0.85902 0.88843 0.89566 0.81217 0.83587 0.83416 0.80695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.19 71.98 0.66 -1.92 16 2 C -0.11 -2.94 3.11 -10.79 -0.03 -2.97 16 3 C -0.14 -3.24 7.59 71.98 0.55 -2.69 16 4 C 0.11 3.32 4.89 86.38 0.42 3.74 16 5 N -0.60 -24.43 2.26 -826.18 -1.87 -26.30 16 6 C 0.26 14.04 5.22 85.63 0.45 14.49 16 7 C -0.54 -30.88 9.39 25.60 0.24 -30.64 16 8 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 9 C 0.01 0.50 5.46 84.66 0.46 0.96 16 10 N -0.93 -55.89 13.29 21.45 0.28 -55.60 16 11 Si 0.97 44.46 29.54 68.60 2.03 46.49 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 14 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 15 C 0.51 19.90 6.45 87.66 0.57 20.46 16 16 O -0.60 -29.29 15.54 -3.01 -0.05 -29.34 16 17 C -0.15 -3.84 4.38 29.85 0.13 -3.71 16 18 C 0.13 3.29 5.39 86.38 0.47 3.76 16 19 N -0.45 -10.45 2.75 -524.47 -1.44 -11.89 16 20 C -0.03 -0.68 11.43 83.21 0.95 0.27 16 21 C -0.22 -4.63 10.86 22.14 0.24 -4.38 16 22 C -0.22 -4.53 10.86 22.14 0.24 -4.29 16 23 C -0.03 -0.54 11.43 83.21 0.95 0.41 16 24 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 1.52 8.01 -2.38 -0.02 1.50 16 28 H 0.03 0.83 6.87 -2.39 -0.02 0.81 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.37 6.49 -2.39 -0.02 1.36 16 31 H 0.07 2.26 8.12 -2.39 -0.02 2.24 16 32 H 0.10 2.36 6.10 -2.39 -0.01 2.35 16 33 H 0.02 1.03 7.94 -2.39 -0.02 1.01 16 34 H 0.00 -0.10 7.35 -2.39 -0.02 -0.12 16 35 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.11 2.57 7.37 -2.39 -0.02 2.55 16 37 H 0.12 2.73 4.80 -2.38 -0.01 2.72 16 38 H 0.09 2.49 8.04 -2.38 -0.02 2.47 16 39 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 41 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 42 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 43 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -71.39 350.49 6.21 -65.17 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.97 Total: 17.98 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 6.29 Total: -6.52 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -3.02 Total: -93.79 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.05 Total: -29.34 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -71.39 6.21 -65.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746174746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.137 kcal (2) G-P(sol) polarization free energy of solvation -71.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds