Wall clock time and date at job start Tue Mar 31 2020 00:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35676 * 116.99818 * 2 1 4 4 C 1.38914 * 119.68602 * 179.97438 * 3 2 1 5 5 C 1.38379 * 119.11555 * 179.97438 * 4 3 2 6 6 C 1.38830 * 118.48263 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.35515 * 180.02562 * 6 5 4 8 8 N 1.46907 * 109.46717 * 90.00439 * 7 6 5 9 9 C 1.46907 * 110.99936 * 190.00269 * 8 7 6 10 10 C 1.50697 * 109.47165 * 155.65621 * 9 8 7 11 11 H 1.07994 * 119.99903 * 2.99732 * 10 9 8 12 12 C 1.37880 * 119.99958 * 182.99258 * 10 9 8 13 13 N 1.31504 * 120.00075 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 119.99786 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47048 * 89.99868 * 14 12 10 16 16 H 1.48501 * 109.47002 * 209.99783 * 14 12 10 17 17 H 1.48499 * 109.47171 * 329.99888 * 14 12 10 18 18 C 1.46899 * 111.00321 * 66.04604 * 8 7 6 19 19 C 1.52999 * 109.47011 * 197.31895 * 18 8 7 20 20 C 1.53000 * 109.47332 * 60.97698 * 19 18 8 21 21 C 1.53004 * 109.46843 * 180.97950 * 19 18 8 22 22 C 1.38051 * 119.29041 * 359.97438 * 6 5 4 23 23 N 1.31966 * 120.83090 * 0.02562 * 22 6 5 24 24 H 1.09004 * 109.46674 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47069 * 299.99239 * 1 2 3 26 26 H 1.08997 * 109.47832 * 59.99813 * 1 2 3 27 27 H 1.08001 * 120.44626 * 0.28065 * 4 3 2 28 28 H 1.07999 * 120.75986 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.47515 * 209.99899 * 7 6 5 30 30 H 1.08998 * 109.47623 * 330.00328 * 7 6 5 31 31 H 1.09002 * 109.46911 * 275.65914 * 9 8 7 32 32 H 1.09001 * 109.46820 * 35.65237 * 9 8 7 33 33 H 0.96999 * 120.00426 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.46939 * 317.31591 * 18 8 7 35 35 H 1.09003 * 109.47117 * 77.31629 * 18 8 7 36 36 H 1.09005 * 109.47209 * 300.97475 * 19 18 8 37 37 H 1.08995 * 109.47000 * 180.02562 * 20 19 18 38 38 H 1.08995 * 109.47070 * 300.00402 * 20 19 18 39 39 H 1.09006 * 109.46806 * 60.00153 * 20 19 18 40 40 H 1.09003 * 109.47131 * 60.00322 * 21 19 18 41 41 H 1.09004 * 109.46921 * 179.97438 * 21 19 18 42 42 H 1.08995 * 109.46890 * 299.99804 * 21 19 18 43 43 H 1.08005 * 119.58129 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4325 1.2740 0.0005 5 6 4.0484 2.5132 0.0000 6 6 3.2503 3.6492 -0.0005 7 6 3.8766 5.0199 -0.0017 8 7 4.0795 5.4643 -1.3872 9 6 4.8982 6.6831 -1.4346 10 6 5.5775 6.7801 -2.7763 11 1 5.3794 6.0392 -3.5366 12 6 6.4518 7.8148 -3.0332 13 7 7.0442 7.8998 -4.2041 14 14 6.7949 9.0960 -1.7177 15 1 7.9466 8.6582 -0.8889 16 1 7.1146 10.3947 -2.3631 17 1 5.5961 9.2535 -0.8556 18 6 2.7940 5.6667 -2.0688 19 6 3.0189 5.7013 -3.5817 20 6 3.6114 4.3672 -4.0399 21 6 1.6835 5.9366 -4.2905 22 6 1.8769 3.5097 -0.0010 23 7 1.3185 2.3140 -0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3635 0.5138 -0.8899 27 1 4.0229 0.3697 -0.0036 28 1 5.1253 2.5948 0.0000 29 1 3.2183 5.7206 0.5118 30 1 4.8373 4.9810 0.5117 31 1 4.2610 7.5548 -1.2860 32 1 5.6516 6.6455 -0.6477 33 1 7.6596 8.6275 -4.3848 34 1 2.1183 4.8483 -1.8205 35 1 2.3558 6.6108 -1.7449 36 1 3.7083 6.5088 -3.8283 37 1 3.7720 4.3920 -5.1177 38 1 4.5627 4.1996 -3.5349 39 1 2.9219 3.5596 -3.7934 40 1 1.2614 6.8871 -3.9642 41 1 1.8438 5.9616 -5.3684 42 1 0.9942 5.1291 -4.0440 43 1 1.2515 4.3903 -0.0010 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754660183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:53 Heat of formation + Delta-G solvation = 0.545646 kcal Electronic energy + Delta-G solvation = -22305.183598 eV Core-core repulsion = 19157.996101 eV Total energy + Delta-G solvation = -3147.187497 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.58864 -38.37270 -37.17416 -33.98083 -32.74174 -32.24685 -30.96774 -28.07424 -27.21413 -26.41862 -26.14196 -23.71077 -23.33254 -21.57885 -20.56048 -19.10577 -18.35454 -16.99298 -16.77278 -16.01230 -15.32539 -15.18926 -14.54206 -14.40918 -14.25961 -14.08623 -13.71191 -13.21953 -13.00409 -12.86423 -12.59106 -12.42374 -12.08343 -11.75730 -11.72616 -11.59766 -11.35957 -11.19754 -11.07696 -10.58204 -10.43779 -10.19346 -10.01496 -9.94924 -9.78325 -9.59221 -9.46909 -9.01406 -8.52468 -8.29817 -7.36786 -6.03545 -3.99137 1.24011 1.40953 3.10510 3.27014 3.35472 3.36654 3.83802 4.37065 4.42152 4.81902 4.97563 5.07547 5.14493 5.15192 5.22152 5.27104 5.35959 5.52595 5.60882 5.63136 5.74461 5.87023 5.93081 6.01874 6.06222 6.09169 6.23210 6.31638 6.49850 6.51772 6.53189 6.57282 6.70771 6.72571 6.88018 6.96400 7.25153 7.28950 7.45082 7.64880 7.88278 7.92234 8.03147 8.67204 9.09648 9.58111 11.08259 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023450 B = 0.004649 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.739108 B = 6021.916204 C = 6546.530717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.313 6.313 3 C 0.307 3.693 4 C -0.190 4.190 5 C -0.020 4.020 6 C -0.147 4.147 7 C 0.096 3.904 8 N -0.519 5.519 9 C 0.161 3.839 10 C -0.508 4.508 11 H 0.099 0.901 12 C 0.069 3.931 13 N -0.899 5.899 14 Si 0.868 3.132 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.269 1.269 18 C 0.070 3.930 19 C -0.106 4.106 20 C -0.124 4.124 21 C -0.143 4.143 22 C 0.140 3.860 23 N -0.541 5.541 24 H 0.092 0.908 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.138 0.862 28 H 0.143 0.857 29 H 0.033 0.967 30 H 0.081 0.919 31 H -0.008 1.008 32 H 0.020 0.980 33 H 0.263 0.737 34 H 0.055 0.945 35 H 0.022 0.978 36 H 0.117 0.883 37 H 0.036 0.964 38 H 0.074 0.926 39 H 0.027 0.973 40 H 0.045 0.955 41 H 0.050 0.950 42 H 0.040 0.960 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.841 -10.642 8.461 17.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.220 6.220 3 C 0.128 3.872 4 C -0.210 4.210 5 C -0.046 4.046 6 C -0.150 4.150 7 C -0.032 4.032 8 N -0.242 5.242 9 C 0.035 3.965 10 C -0.546 4.546 11 H 0.117 0.883 12 C -0.133 4.133 13 N -0.538 5.538 14 Si 0.696 3.304 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.194 1.194 18 C -0.058 4.058 19 C -0.125 4.125 20 C -0.182 4.182 21 C -0.201 4.201 22 C -0.016 4.016 23 N -0.264 5.264 24 H 0.110 0.890 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.156 0.844 28 H 0.161 0.839 29 H 0.051 0.949 30 H 0.099 0.901 31 H 0.009 0.991 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.135 0.865 37 H 0.055 0.945 38 H 0.093 0.907 39 H 0.046 0.954 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.262 -11.239 8.112 17.859 hybrid contribution 0.439 1.615 1.034 1.967 sum -10.823 -9.624 9.146 17.129 Atomic orbital electron populations 1.22790 0.77675 1.02507 1.02349 1.86212 1.22578 1.24918 1.88293 1.19793 0.89439 0.84547 0.93441 1.21035 0.91845 0.99514 1.08618 1.21334 1.00836 0.90380 0.92089 1.20747 0.94256 0.96885 1.03073 1.20944 0.99570 0.90527 0.92180 1.62010 1.15460 1.35599 1.11165 1.20281 0.92101 0.85426 0.98690 1.21310 1.23755 1.11380 0.98185 0.88310 1.24903 0.95708 0.97546 0.95123 1.69876 1.29681 1.32447 1.21799 0.86973 0.78981 0.81798 0.82634 1.20329 1.21368 1.19436 1.22109 0.90394 0.97947 0.95323 1.21445 0.96777 1.01037 0.93205 1.21590 1.01512 0.95625 0.99443 1.21830 0.97863 1.00143 1.00249 1.22243 0.92457 0.93280 0.93605 1.67260 1.40888 0.98744 1.19545 0.88992 0.92548 0.92412 0.84427 0.83880 0.94876 0.90090 0.99081 0.96203 0.92744 0.92665 0.96019 0.86526 0.94459 0.90731 0.95363 0.93581 0.93132 0.94137 0.82969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.38 101.05 1.05 1.47 16 2 O -0.31 -4.07 10.48 -18.73 -0.20 -4.27 16 3 C 0.31 4.36 7.49 -17.12 -0.13 4.23 16 4 C -0.19 -2.49 10.04 -39.28 -0.39 -2.88 16 5 C -0.02 -0.28 9.85 -39.31 -0.39 -0.66 16 6 C -0.15 -2.12 4.96 -104.47 -0.52 -2.63 16 7 C 0.10 1.51 5.10 -4.97 -0.03 1.49 16 8 N -0.52 -9.94 3.70 -237.51 -0.88 -10.82 16 9 C 0.16 3.63 3.85 -4.97 -0.02 3.62 16 10 C -0.51 -13.41 7.79 -34.44 -0.27 -13.68 16 11 H 0.10 2.77 4.82 -52.49 -0.25 2.52 16 12 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 13 N -0.90 -26.54 13.96 55.43 0.77 -25.76 16 14 Si 0.87 20.76 27.41 -169.99 -4.66 16.10 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.27 -6.22 6.63 56.52 0.37 -5.85 16 18 C 0.07 1.27 4.25 -3.82 -0.02 1.26 16 19 C -0.11 -2.03 2.40 -90.62 -0.22 -2.25 16 20 C -0.12 -2.37 8.40 37.16 0.31 -2.06 16 21 C -0.14 -2.32 9.19 37.16 0.34 -1.98 16 22 C 0.14 1.97 9.02 -17.56 -0.16 1.81 16 23 N -0.54 -7.89 9.22 -13.33 -0.12 -8.01 16 24 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 26 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 27 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.14 1.75 8.06 -52.49 -0.42 1.32 16 29 H 0.03 0.49 8.07 -51.93 -0.42 0.07 16 30 H 0.08 1.23 7.75 -51.93 -0.40 0.83 16 31 H -0.01 -0.20 6.94 -51.93 -0.36 -0.56 16 32 H 0.02 0.45 6.91 -51.93 -0.36 0.09 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.06 0.92 5.07 -51.93 -0.26 0.65 16 35 H 0.02 0.39 7.74 -51.93 -0.40 -0.01 16 36 H 0.12 2.69 5.14 -51.93 -0.27 2.43 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.58 6.73 -51.93 -0.35 1.23 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.15 1.92 7.68 -52.48 -0.40 1.52 16 LS Contribution 340.12 15.07 5.13 5.13 Total: -1.00 -29.42 340.12 -7.35 -36.77 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.86 Total: 1.35 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -0.53 Total: -10.48 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -0.23 Total: -44.59 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.20 Total: -4.27 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.66 Total: 16.10 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.42 -7.35 -36.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754660183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.315 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds