Wall clock time and date at job start Tue Mar 31 2020 00:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35676 * 116.99818 * 2 1 4 4 C 1.38914 * 119.68602 * 179.97438 * 3 2 1 5 5 C 1.38379 * 119.11555 * 179.97438 * 4 3 2 6 6 C 1.38830 * 118.48263 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.35515 * 180.02562 * 6 5 4 8 8 N 1.46907 * 109.46717 * 90.00439 * 7 6 5 9 9 C 1.46907 * 110.99936 * 190.00269 * 8 7 6 10 10 C 1.50697 * 109.47165 * 155.65621 * 9 8 7 11 11 H 1.07994 * 119.99903 * 2.99732 * 10 9 8 12 12 C 1.37880 * 119.99958 * 182.99258 * 10 9 8 13 13 N 1.31504 * 120.00075 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 119.99786 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47048 * 89.99868 * 14 12 10 16 16 H 1.48501 * 109.47002 * 209.99783 * 14 12 10 17 17 H 1.48499 * 109.47171 * 329.99888 * 14 12 10 18 18 C 1.46899 * 111.00321 * 66.04604 * 8 7 6 19 19 C 1.52999 * 109.47011 * 197.31895 * 18 8 7 20 20 C 1.53000 * 109.47332 * 60.97698 * 19 18 8 21 21 C 1.53004 * 109.46843 * 180.97950 * 19 18 8 22 22 C 1.38051 * 119.29041 * 359.97438 * 6 5 4 23 23 N 1.31966 * 120.83090 * 0.02562 * 22 6 5 24 24 H 1.09004 * 109.46674 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47069 * 299.99239 * 1 2 3 26 26 H 1.08997 * 109.47832 * 59.99813 * 1 2 3 27 27 H 1.08001 * 120.44626 * 0.28065 * 4 3 2 28 28 H 1.07999 * 120.75986 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.47515 * 209.99899 * 7 6 5 30 30 H 1.08998 * 109.47623 * 330.00328 * 7 6 5 31 31 H 1.09002 * 109.46911 * 275.65914 * 9 8 7 32 32 H 1.09001 * 109.46820 * 35.65237 * 9 8 7 33 33 H 0.96999 * 120.00426 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.46939 * 317.31591 * 18 8 7 35 35 H 1.09003 * 109.47117 * 77.31629 * 18 8 7 36 36 H 1.09005 * 109.47209 * 300.97475 * 19 18 8 37 37 H 1.08995 * 109.47000 * 180.02562 * 20 19 18 38 38 H 1.08995 * 109.47070 * 300.00402 * 20 19 18 39 39 H 1.09006 * 109.46806 * 60.00153 * 20 19 18 40 40 H 1.09003 * 109.47131 * 60.00322 * 21 19 18 41 41 H 1.09004 * 109.46921 * 179.97438 * 21 19 18 42 42 H 1.08995 * 109.46890 * 299.99804 * 21 19 18 43 43 H 1.08005 * 119.58129 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4325 1.2740 0.0005 5 6 4.0484 2.5132 0.0000 6 6 3.2503 3.6492 -0.0005 7 6 3.8766 5.0199 -0.0017 8 7 4.0795 5.4643 -1.3872 9 6 4.8982 6.6831 -1.4346 10 6 5.5775 6.7801 -2.7763 11 1 5.3794 6.0392 -3.5366 12 6 6.4518 7.8148 -3.0332 13 7 7.0442 7.8998 -4.2041 14 14 6.7949 9.0960 -1.7177 15 1 7.9466 8.6582 -0.8889 16 1 7.1146 10.3947 -2.3631 17 1 5.5961 9.2535 -0.8556 18 6 2.7940 5.6667 -2.0688 19 6 3.0189 5.7013 -3.5817 20 6 3.6114 4.3672 -4.0399 21 6 1.6835 5.9366 -4.2905 22 6 1.8769 3.5097 -0.0010 23 7 1.3185 2.3140 -0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3635 0.5138 -0.8899 27 1 4.0229 0.3697 -0.0036 28 1 5.1253 2.5948 0.0000 29 1 3.2183 5.7206 0.5118 30 1 4.8373 4.9810 0.5117 31 1 4.2610 7.5548 -1.2860 32 1 5.6516 6.6455 -0.6477 33 1 7.6596 8.6275 -4.3848 34 1 2.1183 4.8483 -1.8205 35 1 2.3558 6.6108 -1.7449 36 1 3.7083 6.5088 -3.8283 37 1 3.7720 4.3920 -5.1177 38 1 4.5627 4.1996 -3.5349 39 1 2.9219 3.5596 -3.7934 40 1 1.2614 6.8871 -3.9642 41 1 1.8438 5.9616 -5.3684 42 1 0.9942 5.1291 -4.0440 43 1 1.2515 4.3903 -0.0010 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754660183.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:52 Heat of formation + Delta-G solvation = -18.764332 kcal Electronic energy + Delta-G solvation = -22306.020941 eV Core-core repulsion = 19157.996101 eV Total energy + Delta-G solvation = -3148.024841 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.63334 -39.58286 -38.44825 -35.39478 -34.65796 -33.42080 -32.25549 -29.66555 -28.30867 -27.85674 -27.41385 -25.21886 -24.36309 -23.00690 -22.02634 -20.66880 -19.33751 -18.76240 -17.98402 -17.01326 -16.74800 -16.63448 -16.02850 -15.76544 -15.43258 -15.28727 -15.09054 -14.53535 -14.44227 -14.16287 -14.03068 -13.95610 -13.31296 -13.15042 -13.11933 -12.90356 -12.73640 -12.60705 -12.34568 -12.09178 -12.02881 -11.86902 -11.63418 -11.45683 -11.38236 -10.93032 -10.74576 -10.58563 -10.56291 -9.38102 -8.87117 -8.14212 -6.12760 0.18506 0.34503 1.38407 1.40762 1.48986 2.18722 2.42583 2.74169 3.17099 3.36826 3.43542 3.85901 4.02581 4.08259 4.15170 4.27649 4.31649 4.45702 4.48989 4.49907 4.57329 4.68353 4.75133 4.76547 4.79872 4.84928 4.90054 4.97224 5.00605 5.01184 5.08605 5.17064 5.26507 5.42045 5.45571 5.51084 5.67638 5.69539 5.86370 6.14665 6.27187 6.49820 6.75903 6.85893 6.98213 7.47731 9.00582 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023450 B = 0.004649 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.739108 B = 6021.916204 C = 6546.530717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.321 6.321 3 C 0.296 3.704 4 C -0.191 4.191 5 C -0.024 4.024 6 C -0.156 4.156 7 C 0.099 3.901 8 N -0.530 5.530 9 C 0.169 3.831 10 C -0.500 4.500 11 H 0.071 0.929 12 C 0.008 3.992 13 N -0.949 5.949 14 Si 0.931 3.069 15 H -0.270 1.270 16 H -0.292 1.292 17 H -0.253 1.253 18 C 0.075 3.925 19 C -0.107 4.107 20 C -0.113 4.113 21 C -0.136 4.136 22 C 0.137 3.863 23 N -0.551 5.551 24 H 0.122 0.878 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.157 0.843 28 H 0.153 0.847 29 H 0.047 0.953 30 H 0.085 0.915 31 H -0.012 1.012 32 H 0.026 0.974 33 H 0.261 0.739 34 H 0.075 0.925 35 H 0.023 0.977 36 H 0.072 0.928 37 H 0.032 0.968 38 H 0.047 0.953 39 H 0.043 0.957 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.312 -11.374 10.258 19.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.228 6.228 3 C 0.117 3.883 4 C -0.211 4.211 5 C -0.049 4.049 6 C -0.159 4.159 7 C -0.029 4.029 8 N -0.254 5.254 9 C 0.042 3.958 10 C -0.539 4.539 11 H 0.089 0.911 12 C -0.188 4.188 13 N -0.591 5.591 14 Si 0.757 3.243 15 H -0.196 1.196 16 H -0.218 1.218 17 H -0.177 1.177 18 C -0.053 4.053 19 C -0.126 4.126 20 C -0.170 4.170 21 C -0.194 4.194 22 C -0.019 4.019 23 N -0.275 5.275 24 H 0.140 0.860 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.174 0.826 28 H 0.171 0.829 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.006 0.994 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.041 0.959 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -12.759 -11.995 9.935 20.134 hybrid contribution 0.820 1.693 0.444 1.933 sum -11.939 -10.302 10.379 18.878 Atomic orbital electron populations 1.23016 0.76103 1.04483 1.02070 1.86209 1.24181 1.24395 1.88063 1.20081 0.90031 0.84877 0.93267 1.21261 0.91814 1.00122 1.07937 1.21523 1.01425 0.90402 0.91592 1.20646 0.94553 0.96337 1.04334 1.20956 1.00425 0.91469 0.90066 1.61864 1.15965 1.33766 1.13799 1.20045 0.92444 0.86900 0.96371 1.21612 1.22849 1.10057 0.99347 0.91058 1.25695 0.96007 1.00000 0.97108 1.70032 1.31299 1.33645 1.24173 0.85951 0.79461 0.78807 0.80093 1.19556 1.21792 1.17691 1.22083 0.90195 0.98741 0.94248 1.21337 0.97369 0.99186 0.94683 1.21444 1.00465 0.96276 0.98815 1.21748 0.96432 1.01286 0.99925 1.22449 0.92504 0.93672 0.93241 1.67292 1.41174 0.98971 1.20013 0.85987 0.92522 0.92931 0.82572 0.82917 0.93449 0.89631 0.99416 0.95586 0.92982 0.90683 0.95902 0.91007 0.94871 0.93435 0.93756 0.92823 0.93117 0.92207 0.81632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.38 113.37 1.18 1.84 16 2 O -0.32 -7.71 10.48 -89.93 -0.94 -8.66 16 3 C 0.30 7.83 7.49 84.79 0.63 8.47 16 4 C -0.19 -4.63 10.04 22.47 0.23 -4.40 16 5 C -0.02 -0.59 9.85 22.45 0.22 -0.37 16 6 C -0.16 -4.17 4.96 -19.77 -0.10 -4.26 16 7 C 0.10 2.89 5.10 85.55 0.44 3.33 16 8 N -0.53 -19.70 3.70 -905.34 -3.35 -23.05 16 9 C 0.17 7.50 3.85 85.55 0.33 7.83 16 10 C -0.50 -26.87 7.79 25.60 0.20 -26.67 16 11 H 0.07 4.17 4.82 -2.91 -0.01 4.15 16 12 C 0.01 0.47 5.47 84.66 0.46 0.93 16 13 N -0.95 -57.89 13.96 21.45 0.30 -57.59 16 14 Si 0.93 42.88 27.41 68.60 1.88 44.76 16 15 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 17 H -0.25 -10.85 6.63 99.48 0.66 -10.19 16 18 C 0.08 2.60 4.25 86.30 0.37 2.97 16 19 C -0.11 -4.06 2.40 -10.79 -0.03 -4.09 16 20 C -0.11 -4.29 8.40 71.98 0.60 -3.69 16 21 C -0.14 -4.21 9.19 71.98 0.66 -3.55 16 22 C 0.14 3.54 9.02 84.63 0.76 4.30 16 23 N -0.55 -14.90 9.22 -308.95 -2.85 -17.75 16 24 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.06 0.99 8.10 -2.38 -0.02 0.97 16 26 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 27 H 0.16 3.10 8.06 -2.91 -0.02 3.07 16 28 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 29 H 0.05 1.27 8.07 -2.39 -0.02 1.25 16 30 H 0.09 2.41 7.75 -2.39 -0.02 2.39 16 31 H -0.01 -0.53 6.94 -2.39 -0.02 -0.55 16 32 H 0.03 1.13 6.91 -2.39 -0.02 1.11 16 33 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 34 H 0.07 2.31 5.07 -2.39 -0.01 2.30 16 35 H 0.02 0.79 7.74 -2.39 -0.02 0.77 16 36 H 0.07 3.41 5.14 -2.38 -0.01 3.40 16 37 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.05 2.05 6.73 -2.39 -0.02 2.03 16 39 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 40 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.17 3.72 7.68 -2.91 -0.02 3.69 16 Total: -1.00 -63.91 340.12 1.94 -61.98 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.93 Total: 17.68 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 5.96 Total: -17.37 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -5.90 Total: -98.39 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.94 Total: -8.66 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.88 Total: 44.76 kcal Total: -63.91 1.94 -61.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754660183.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.214 kcal (2) G-P(sol) polarization free energy of solvation -63.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds