Wall clock time and date at job start Tue Mar 31 2020 00:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35679 * 116.99503 * 2 1 4 4 C 1.38923 * 119.68474 * 180.02562 * 3 2 1 5 5 C 1.38372 * 119.11328 * 180.27858 * 4 3 2 6 6 C 1.50695 * 120.75933 * 179.71791 * 5 4 3 7 7 N 1.46897 * 109.47192 * 89.99777 * 6 5 4 8 8 C 1.46905 * 111.00317 * 170.00041 * 7 6 5 9 9 C 1.50702 * 109.47038 * 284.41063 * 8 7 6 10 10 H 1.08007 * 120.00037 * 4.68088 * 9 8 7 11 11 C 1.37874 * 120.00069 * 184.69044 * 9 8 7 12 12 N 1.31517 * 119.99793 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00412 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46866 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47326 * 119.99717 * 13 11 9 16 16 H 1.48505 * 109.47306 * 239.99890 * 13 11 9 17 17 C 1.46899 * 111.00104 * 293.95670 * 7 6 5 18 18 C 1.52999 * 109.46866 * 164.07786 * 17 7 6 19 19 C 1.53002 * 109.47183 * 176.97949 * 18 17 7 20 20 C 1.53001 * 109.47633 * 296.98333 * 18 17 7 21 21 C 1.38837 * 118.48227 * 359.43740 * 5 4 3 22 22 C 1.38043 * 119.28977 * 0.56572 * 21 5 4 23 23 N 1.31963 * 120.83622 * 359.69666 * 22 21 5 24 24 H 1.08996 * 109.47171 * 60.00134 * 1 2 3 25 25 H 1.09001 * 109.46555 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47242 * 299.99359 * 1 2 3 27 27 H 1.08005 * 120.44110 * 0.02562 * 4 3 2 28 28 H 1.09006 * 109.47651 * 210.00306 * 6 5 4 29 29 H 1.09001 * 109.47004 * 330.00062 * 6 5 4 30 30 H 1.08999 * 109.46545 * 44.40569 * 8 7 6 31 31 H 1.08993 * 109.47043 * 164.40562 * 8 7 6 32 32 H 0.97000 * 119.99849 * 179.97438 * 12 11 9 33 33 H 1.08993 * 109.46869 * 284.07721 * 17 7 6 34 34 H 1.08996 * 109.46813 * 44.08526 * 17 7 6 35 35 H 1.09006 * 109.47026 * 56.98451 * 18 17 7 36 36 H 1.09006 * 109.46729 * 60.00321 * 19 18 17 37 37 H 1.09001 * 109.47477 * 180.02562 * 19 18 17 38 38 H 1.09003 * 109.47049 * 300.00659 * 19 18 17 39 39 H 1.08996 * 109.47162 * 60.00078 * 20 18 17 40 40 H 1.09002 * 109.46882 * 180.02562 * 20 18 17 41 41 H 1.08994 * 109.46645 * 299.99952 * 20 18 17 42 42 H 1.07999 * 120.35320 * 180.30479 * 21 5 4 43 43 H 1.08002 * 119.58069 * 179.72316 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2090 0.0000 4 6 3.4325 1.2742 -0.0005 5 6 4.0483 2.5133 0.0053 6 6 5.5509 2.6272 0.0114 7 7 6.0445 2.6681 -1.3716 8 6 7.4714 3.0152 -1.4114 9 6 7.6371 4.4900 -1.1493 10 1 6.7778 5.0934 -0.8963 11 6 8.8856 5.0689 -1.2325 12 7 9.9320 4.3340 -1.5402 13 14 9.0910 6.8970 -0.9082 14 1 7.7702 7.4939 -0.5850 15 1 10.0178 7.0960 0.2350 16 1 9.6483 7.5547 -2.1174 17 6 5.7933 1.3940 -2.0582 18 6 5.9447 1.5897 -3.5680 19 6 5.7573 0.2473 -4.2777 20 6 4.8882 2.5799 -4.0625 21 6 3.2502 3.6493 -0.0004 22 6 1.8768 3.5097 0.0002 23 7 1.3184 2.3141 0.0001 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 4.0229 0.3697 -0.0014 28 1 5.8441 3.5406 0.5290 29 1 5.9786 1.7657 0.5243 30 1 8.0045 2.4484 -0.6482 31 1 7.8769 2.7729 -2.3937 32 1 10.8103 4.7414 -1.5991 33 1 6.5106 0.6487 -1.7147 34 1 4.7817 1.0546 -1.8355 35 1 6.9388 1.9802 -3.7859 36 1 4.7632 -0.1432 -4.0598 37 1 5.8656 0.3866 -5.3533 38 1 6.5100 -0.4581 -3.9254 39 1 5.0217 3.5362 -3.5570 40 1 4.9959 2.7189 -5.1382 41 1 3.8942 2.1893 -3.8446 42 1 3.6990 4.6316 -0.0010 43 1 1.2514 4.3903 0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762925936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:15 Heat of formation + Delta-G solvation = -9.842576 kcal Electronic energy + Delta-G solvation = -22215.883026 eV Core-core repulsion = 19068.245062 eV Total energy + Delta-G solvation = -3147.637964 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.49743 -38.19306 -37.19345 -34.32177 -32.98507 -31.72819 -30.56389 -27.64455 -27.09746 -26.64904 -26.44059 -23.77223 -23.22246 -21.85535 -20.69697 -19.06546 -17.68693 -16.88656 -16.46034 -15.93729 -15.68232 -14.89823 -14.81572 -14.60927 -14.22550 -14.02996 -13.76857 -13.47544 -13.05355 -12.65544 -12.44623 -12.17094 -11.97012 -11.84165 -11.62342 -11.39701 -11.24952 -11.13425 -11.11327 -10.75486 -10.64143 -10.42945 -10.23510 -10.12995 -9.74056 -9.48119 -9.39076 -9.12962 -8.43713 -8.32572 -7.29198 -6.03957 -4.05112 1.34140 1.49778 3.15872 3.29686 3.37723 3.41475 3.94618 4.41456 4.44554 4.91630 5.02355 5.17698 5.24392 5.25513 5.31930 5.32267 5.39793 5.47094 5.49809 5.57731 5.76505 5.79463 5.94547 5.96705 6.10105 6.14227 6.17151 6.26575 6.29875 6.36656 6.48743 6.58844 6.62464 6.72935 6.90294 7.00267 7.20299 7.30910 7.34277 7.79668 7.99414 8.08419 8.15209 8.50442 9.02288 9.59142 11.06587 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.005039 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.878512 B = 5555.082541 C = 6509.308477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.312 6.312 3 C 0.311 3.689 4 C -0.187 4.187 5 C 0.017 3.983 6 C 0.095 3.905 7 N -0.523 5.523 8 C 0.191 3.809 9 C -0.503 4.503 10 H 0.063 0.937 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.895 3.105 14 H -0.272 1.272 15 H -0.286 1.286 16 H -0.285 1.285 17 C 0.053 3.947 18 C -0.091 4.091 19 C -0.144 4.144 20 C -0.130 4.130 21 C -0.184 4.184 22 C 0.130 3.870 23 N -0.549 5.549 24 H 0.056 0.944 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.135 0.865 28 H 0.098 0.902 29 H 0.035 0.965 30 H -0.011 1.011 31 H 0.039 0.961 32 H 0.260 0.740 33 H 0.022 0.978 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.140 0.860 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.758 -6.495 1.186 16.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.220 6.220 3 C 0.132 3.868 4 C -0.208 4.208 5 C 0.009 3.991 6 C -0.033 4.033 7 N -0.248 5.248 8 C 0.067 3.933 9 C -0.542 4.542 10 H 0.082 0.918 11 C -0.146 4.146 12 N -0.538 5.538 13 Si 0.723 3.277 14 H -0.197 1.197 15 H -0.212 1.212 16 H -0.211 1.211 17 C -0.076 4.076 18 C -0.110 4.110 19 C -0.202 4.202 20 C -0.188 4.188 21 C -0.205 4.205 22 C -0.025 4.025 23 N -0.273 5.273 24 H 0.075 0.925 25 H 0.109 0.891 26 H 0.074 0.926 27 H 0.153 0.847 28 H 0.116 0.884 29 H 0.053 0.947 30 H 0.007 0.993 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.158 0.842 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -15.607 -6.460 0.911 16.916 hybrid contribution 1.362 0.497 0.518 1.540 sum -14.245 -5.962 1.429 15.508 Atomic orbital electron populations 1.22771 0.77801 1.02440 1.02233 1.86222 1.22464 1.24991 1.88318 1.19735 0.89224 0.84522 0.93295 1.20969 0.91677 0.99221 1.08968 1.20315 0.97202 0.91441 0.90165 1.21036 0.87527 1.02328 0.92427 1.62137 1.22041 1.28709 1.11894 1.19824 0.80186 0.96254 0.97084 1.21179 0.93237 0.93396 1.46363 0.91848 1.24974 0.95940 0.98118 0.95533 1.69963 0.99203 1.35575 1.49089 0.86487 0.78105 0.85335 0.77744 1.19656 1.21201 1.21098 1.22229 0.99776 0.91277 0.94274 1.21079 1.00705 0.94910 0.94324 1.21819 1.00932 0.97466 0.99959 1.21632 0.97174 1.00734 0.99231 1.21950 0.94131 1.00110 1.04284 1.22308 0.92918 0.93326 0.93931 1.67232 1.41004 0.98871 1.20206 0.92525 0.89055 0.92579 0.84749 0.88412 0.94711 0.99303 0.94264 0.93010 0.95977 0.91766 0.90490 0.93329 0.93040 0.93190 0.90802 0.94289 0.94336 0.84191 0.82731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.38 101.05 1.05 1.49 16 2 O -0.31 -4.35 10.48 -18.74 -0.20 -4.54 16 3 C 0.31 4.70 7.49 -17.12 -0.13 4.57 16 4 C -0.19 -2.86 7.92 -39.28 -0.31 -3.17 16 5 C 0.02 0.27 4.95 -104.35 -0.52 -0.25 16 6 C 0.09 1.71 4.98 -4.98 -0.02 1.69 16 7 N -0.52 -10.55 3.74 -237.52 -0.89 -11.44 16 8 C 0.19 4.71 4.59 -4.97 -0.02 4.69 16 9 C -0.50 -13.43 8.61 -34.44 -0.30 -13.73 16 10 H 0.06 1.67 7.65 -52.48 -0.40 1.27 16 11 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 12 N -0.90 -26.02 13.29 55.43 0.74 -25.29 16 13 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 14 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 C 0.05 0.95 4.22 -3.82 -0.02 0.93 16 18 C -0.09 -1.57 2.92 -90.62 -0.26 -1.83 16 19 C -0.14 -2.04 9.19 37.16 0.34 -1.70 16 20 C -0.13 -2.18 9.06 37.16 0.34 -1.84 16 21 C -0.18 -2.70 9.81 -39.43 -0.39 -3.09 16 22 C 0.13 1.75 11.18 -17.57 -0.20 1.55 16 23 N -0.55 -8.07 9.22 -13.33 -0.12 -8.19 16 24 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 25 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 27 H 0.13 1.95 7.75 -52.48 -0.41 1.54 16 28 H 0.10 1.87 7.28 -51.93 -0.38 1.49 16 29 H 0.03 0.62 8.08 -51.93 -0.42 0.20 16 30 H -0.01 -0.29 8.00 -51.93 -0.42 -0.70 16 31 H 0.04 1.05 6.21 -51.93 -0.32 0.72 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.02 0.40 8.05 -51.93 -0.42 -0.01 16 34 H 0.06 1.08 5.17 -51.93 -0.27 0.81 16 35 H 0.08 1.51 6.46 -51.93 -0.34 1.18 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.40 7.69 -51.93 -0.40 1.00 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.14 1.97 8.06 -52.49 -0.42 1.54 16 43 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 350.17 15.07 5.28 5.28 Total: -1.00 -29.31 350.17 -7.87 -37.18 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -7.12 Total: 0.20 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -0.53 Total: -9.26 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: -0.27 Total: -44.92 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.20 Total: -4.54 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.31 -7.87 -37.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762925936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.340 kcal (2) G-P(sol) polarization free energy of solvation -29.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds