Wall clock time and date at job start Tue Mar 31 2020 00:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35679 * 116.99503 * 2 1 4 4 C 1.38923 * 119.68474 * 180.02562 * 3 2 1 5 5 C 1.38372 * 119.11328 * 180.27858 * 4 3 2 6 6 C 1.50695 * 120.75933 * 179.71791 * 5 4 3 7 7 N 1.46897 * 109.47192 * 89.99777 * 6 5 4 8 8 C 1.46905 * 111.00317 * 170.00041 * 7 6 5 9 9 C 1.50702 * 109.47038 * 284.41063 * 8 7 6 10 10 H 1.08007 * 120.00037 * 4.68088 * 9 8 7 11 11 C 1.37874 * 120.00069 * 184.69044 * 9 8 7 12 12 N 1.31517 * 119.99793 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00412 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46866 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47326 * 119.99717 * 13 11 9 16 16 H 1.48505 * 109.47306 * 239.99890 * 13 11 9 17 17 C 1.46899 * 111.00104 * 293.95670 * 7 6 5 18 18 C 1.52999 * 109.46866 * 164.07786 * 17 7 6 19 19 C 1.53002 * 109.47183 * 176.97949 * 18 17 7 20 20 C 1.53001 * 109.47633 * 296.98333 * 18 17 7 21 21 C 1.38837 * 118.48227 * 359.43740 * 5 4 3 22 22 C 1.38043 * 119.28977 * 0.56572 * 21 5 4 23 23 N 1.31963 * 120.83622 * 359.69666 * 22 21 5 24 24 H 1.08996 * 109.47171 * 60.00134 * 1 2 3 25 25 H 1.09001 * 109.46555 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47242 * 299.99359 * 1 2 3 27 27 H 1.08005 * 120.44110 * 0.02562 * 4 3 2 28 28 H 1.09006 * 109.47651 * 210.00306 * 6 5 4 29 29 H 1.09001 * 109.47004 * 330.00062 * 6 5 4 30 30 H 1.08999 * 109.46545 * 44.40569 * 8 7 6 31 31 H 1.08993 * 109.47043 * 164.40562 * 8 7 6 32 32 H 0.97000 * 119.99849 * 179.97438 * 12 11 9 33 33 H 1.08993 * 109.46869 * 284.07721 * 17 7 6 34 34 H 1.08996 * 109.46813 * 44.08526 * 17 7 6 35 35 H 1.09006 * 109.47026 * 56.98451 * 18 17 7 36 36 H 1.09006 * 109.46729 * 60.00321 * 19 18 17 37 37 H 1.09001 * 109.47477 * 180.02562 * 19 18 17 38 38 H 1.09003 * 109.47049 * 300.00659 * 19 18 17 39 39 H 1.08996 * 109.47162 * 60.00078 * 20 18 17 40 40 H 1.09002 * 109.46882 * 180.02562 * 20 18 17 41 41 H 1.08994 * 109.46645 * 299.99952 * 20 18 17 42 42 H 1.07999 * 120.35320 * 180.30479 * 21 5 4 43 43 H 1.08002 * 119.58069 * 179.72316 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2090 0.0000 4 6 3.4325 1.2742 -0.0005 5 6 4.0483 2.5133 0.0053 6 6 5.5509 2.6272 0.0114 7 7 6.0445 2.6681 -1.3716 8 6 7.4714 3.0152 -1.4114 9 6 7.6371 4.4900 -1.1493 10 1 6.7778 5.0934 -0.8963 11 6 8.8856 5.0689 -1.2325 12 7 9.9320 4.3340 -1.5402 13 14 9.0910 6.8970 -0.9082 14 1 7.7702 7.4939 -0.5850 15 1 10.0178 7.0960 0.2350 16 1 9.6483 7.5547 -2.1174 17 6 5.7933 1.3940 -2.0582 18 6 5.9447 1.5897 -3.5680 19 6 5.7573 0.2473 -4.2777 20 6 4.8882 2.5799 -4.0625 21 6 3.2502 3.6493 -0.0004 22 6 1.8768 3.5097 0.0002 23 7 1.3184 2.3141 0.0001 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 4.0229 0.3697 -0.0014 28 1 5.8441 3.5406 0.5290 29 1 5.9786 1.7657 0.5243 30 1 8.0045 2.4484 -0.6482 31 1 7.8769 2.7729 -2.3937 32 1 10.8103 4.7414 -1.5991 33 1 6.5106 0.6487 -1.7147 34 1 4.7817 1.0546 -1.8355 35 1 6.9388 1.9802 -3.7859 36 1 4.7632 -0.1432 -4.0598 37 1 5.8656 0.3866 -5.3533 38 1 6.5100 -0.4581 -3.9254 39 1 5.0217 3.5362 -3.5570 40 1 4.9959 2.7189 -5.1382 41 1 3.8942 2.1893 -3.8446 42 1 3.6990 4.6316 -0.0010 43 1 1.2514 4.3903 0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762925936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:14 Heat of formation + Delta-G solvation = -28.143003 kcal Electronic energy + Delta-G solvation = -22216.676592 eV Core-core repulsion = 19068.245062 eV Total energy + Delta-G solvation = -3148.431530 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.63215 -39.49095 -38.49293 -35.75097 -34.82488 -33.27231 -31.65861 -29.34657 -28.38467 -27.90059 -27.67954 -25.52327 -24.35550 -23.38755 -22.06943 -20.55353 -18.83148 -18.56321 -17.92430 -16.98958 -16.84765 -16.71444 -16.35488 -15.94129 -15.63969 -15.36034 -14.97172 -14.82953 -14.30670 -14.13159 -13.94291 -13.74501 -13.22720 -13.06346 -12.99231 -12.91362 -12.72007 -12.56117 -12.48991 -12.35195 -12.12206 -12.02582 -11.75623 -11.65133 -11.30313 -11.20914 -10.64436 -10.58884 -10.51681 -9.43452 -8.99308 -8.15330 -6.24148 0.19779 0.31091 1.43127 1.44613 1.57059 2.15611 2.43457 2.77755 3.17067 3.36323 3.45266 3.75715 3.97455 4.05744 4.14999 4.18311 4.29269 4.39295 4.47240 4.49454 4.55834 4.63643 4.71015 4.73829 4.78742 4.84086 4.87519 4.91536 5.00388 5.06069 5.11284 5.21462 5.23459 5.34680 5.48722 5.51434 5.53177 5.60750 5.72389 6.11818 6.28572 6.37217 6.62600 6.87616 6.91165 7.45018 8.95436 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017764 B = 0.005039 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.878512 B = 5555.082541 C = 6509.308477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.323 6.323 3 C 0.306 3.694 4 C -0.194 4.194 5 C 0.008 3.992 6 C 0.099 3.901 7 N -0.524 5.524 8 C 0.208 3.792 9 C -0.512 4.512 10 H 0.065 0.935 11 C 0.002 3.998 12 N -0.936 5.936 13 Si 0.964 3.036 14 H -0.260 1.260 15 H -0.282 1.282 16 H -0.283 1.283 17 C 0.056 3.944 18 C -0.093 4.093 19 C -0.136 4.136 20 C -0.121 4.121 21 C -0.191 4.191 22 C 0.139 3.861 23 N -0.552 5.552 24 H 0.056 0.944 25 H 0.121 0.879 26 H 0.057 0.943 27 H 0.138 0.862 28 H 0.083 0.917 29 H 0.034 0.966 30 H -0.040 1.040 31 H 0.014 0.986 32 H 0.262 0.738 33 H 0.014 0.986 34 H 0.081 0.919 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.144 0.856 43 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.071 -6.198 1.083 18.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.230 6.230 3 C 0.128 3.872 4 C -0.215 4.215 5 C 0.000 4.000 6 C -0.029 4.029 7 N -0.248 5.248 8 C 0.082 3.918 9 C -0.550 4.550 10 H 0.083 0.917 11 C -0.195 4.195 12 N -0.577 5.577 13 Si 0.789 3.211 14 H -0.184 1.184 15 H -0.208 1.208 16 H -0.209 1.209 17 C -0.072 4.072 18 C -0.112 4.112 19 C -0.194 4.194 20 C -0.179 4.179 21 C -0.212 4.212 22 C -0.016 4.016 23 N -0.276 5.276 24 H 0.074 0.926 25 H 0.139 0.861 26 H 0.076 0.924 27 H 0.155 0.845 28 H 0.101 0.899 29 H 0.052 0.948 30 H -0.022 1.022 31 H 0.032 0.968 32 H 0.071 0.929 33 H 0.033 0.967 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.161 0.839 43 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -17.951 -6.181 0.813 19.003 hybrid contribution 1.995 0.342 0.567 2.102 sum -15.956 -5.838 1.380 17.047 Atomic orbital electron populations 1.23037 0.75857 1.04511 1.02251 1.86212 1.24401 1.24385 1.88023 1.19839 0.89234 0.85153 0.92995 1.20958 0.92182 0.98970 1.09392 1.20062 0.95589 0.92530 0.91822 1.20931 0.89460 1.01530 0.90982 1.62057 1.18884 1.30312 1.13510 1.19442 0.82589 0.95226 0.94517 1.21476 0.93381 0.94326 1.45836 0.91670 1.25841 0.95626 1.02770 0.95283 1.70093 0.99720 1.37614 1.50278 0.85413 0.78443 0.79706 0.77530 1.18408 1.20781 1.20883 1.22286 1.00320 0.89947 0.94678 1.21079 0.99131 0.96872 0.94103 1.21747 1.01844 0.95441 1.00365 1.21526 0.97427 0.99115 0.99801 1.22067 0.94828 0.99805 1.04496 1.22821 0.92687 0.94048 0.92031 1.67343 1.40992 0.99106 1.20208 0.92564 0.86075 0.92423 0.84464 0.89906 0.94800 1.02241 0.96804 0.92916 0.96740 0.90088 0.93783 0.91842 0.91689 0.93005 0.93511 0.92824 0.93158 0.83851 0.79282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 10.38 113.37 1.18 1.86 16 2 O -0.32 -8.32 10.48 -89.97 -0.94 -9.26 16 3 C 0.31 8.72 7.49 84.79 0.63 9.36 16 4 C -0.19 -5.73 7.92 22.47 0.18 -5.55 16 5 C 0.01 0.25 4.95 -19.69 -0.10 0.16 16 6 C 0.10 3.65 4.98 85.56 0.43 4.07 16 7 N -0.52 -21.73 3.74 -905.39 -3.39 -25.11 16 8 C 0.21 10.75 4.59 85.56 0.39 11.15 16 9 C -0.51 -28.01 8.61 25.60 0.22 -27.79 16 10 H 0.07 3.47 7.65 -2.91 -0.02 3.45 16 11 C 0.00 0.14 5.46 84.65 0.46 0.60 16 12 N -0.94 -55.67 13.29 21.45 0.28 -55.38 16 13 Si 0.96 43.55 29.54 68.60 2.03 45.58 16 14 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 15 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 C 0.06 2.02 4.22 86.30 0.36 2.38 16 18 C -0.09 -3.20 2.92 -10.79 -0.03 -3.23 16 19 C -0.14 -3.67 9.19 71.98 0.66 -3.01 16 20 C -0.12 -3.96 9.06 71.98 0.65 -3.30 16 21 C -0.19 -5.36 9.81 22.37 0.22 -5.14 16 22 C 0.14 3.38 11.18 84.63 0.95 4.33 16 23 N -0.55 -14.92 9.22 -308.94 -2.85 -17.77 16 24 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 25 H 0.12 1.42 8.14 -2.39 -0.02 1.41 16 26 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 27 H 0.14 3.88 7.75 -2.91 -0.02 3.86 16 28 H 0.08 3.27 7.28 -2.38 -0.02 3.26 16 29 H 0.03 1.24 8.08 -2.39 -0.02 1.22 16 30 H -0.04 -2.26 8.00 -2.39 -0.02 -2.28 16 31 H 0.01 0.78 6.21 -2.39 -0.01 0.77 16 32 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 33 H 0.01 0.54 8.05 -2.39 -0.02 0.52 16 34 H 0.08 2.67 5.17 -2.39 -0.01 2.66 16 35 H 0.04 1.80 6.46 -2.38 -0.02 1.79 16 36 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.05 1.36 8.14 -2.39 -0.02 1.35 16 39 H 0.05 1.76 7.69 -2.39 -0.02 1.75 16 40 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 43 H 0.19 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -63.74 350.17 2.31 -61.43 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.97 Total: 14.64 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 6.21 Total: -14.12 kcal Atomic # 7 Polarization: -92.31 SS G_CDS: -5.95 Total: -98.26 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.94 Total: -9.26 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -63.74 2.31 -61.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762925936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.283 kcal (2) G-P(sol) polarization free energy of solvation -63.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds