Wall clock time and date at job start Tue Mar 31 2020 01:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 119.99954 * 2 1 4 4 N 1.46901 * 109.47323 * 122.90979 * 3 2 1 5 5 C 1.46900 * 111.00246 * 164.25711 * 4 3 2 6 6 C 1.50694 * 109.46763 * 293.95504 * 5 4 3 7 7 H 1.07999 * 120.00526 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99804 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99793 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00322 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46891 * 60.00104 * 10 8 6 12 12 H 1.48498 * 109.47652 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47327 * 300.00912 * 10 8 6 14 14 C 1.46902 * 110.99921 * 288.21386 * 4 3 2 15 15 N 1.46494 * 109.47027 * 156.23046 * 14 4 3 16 16 C 1.46759 * 124.35292 * 278.97651 * 15 14 4 17 17 C 1.54663 * 105.38474 * 162.85708 * 16 15 14 18 18 H 1.09004 * 111.19030 * 267.59556 * 17 16 15 19 19 C 1.52997 * 110.82457 * 143.78018 * 17 16 15 20 20 C 1.52998 * 117.49947 * 135.09522 * 19 17 16 21 21 C 1.52995 * 117.50229 * 66.43122 * 19 17 16 22 22 C 1.54624 * 101.68582 * 25.76516 * 17 16 15 23 23 C 1.34418 * 124.34868 * 99.27764 * 15 14 4 24 24 O 1.21281 * 124.94387 * 0.42524 * 23 15 14 25 25 H 1.08002 * 120.00216 * 359.97438 * 1 2 3 26 26 H 1.08006 * 119.99888 * 179.72597 * 1 2 3 27 27 H 1.08002 * 120.00216 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47388 * 242.91521 * 3 2 1 29 29 H 1.09006 * 109.46995 * 2.91282 * 3 2 1 30 30 H 1.08998 * 109.47037 * 53.95764 * 5 4 3 31 31 H 1.08998 * 109.47000 * 173.95246 * 5 4 3 32 32 H 0.97005 * 120.00207 * 179.97438 * 9 8 6 33 33 H 1.08992 * 109.46933 * 276.23255 * 14 4 3 34 34 H 1.09004 * 109.47267 * 36.23332 * 14 4 3 35 35 H 1.09001 * 110.24879 * 281.98440 * 16 15 14 36 36 H 1.09004 * 110.24858 * 43.98184 * 16 15 14 37 37 H 1.09004 * 115.54893 * 280.76434 * 19 17 16 38 38 H 1.08993 * 117.50270 * 359.97438 * 20 19 17 39 39 H 1.09007 * 117.49652 * 145.02056 * 20 19 17 40 40 H 1.09001 * 117.50698 * 214.98118 * 21 19 17 41 41 H 1.09008 * 117.49709 * 359.97438 * 21 19 17 42 42 H 1.08995 * 110.48998 * 216.31241 * 22 17 16 43 43 H 1.08997 * 110.59911 * 93.71754 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9600 1.3530 1.1627 5 6 3.9670 2.4112 1.0079 6 6 4.8838 2.0683 -0.1379 7 1 4.7337 1.1554 -0.6951 8 6 5.9143 2.9202 -0.4750 9 7 6.0974 4.0316 0.2038 10 14 7.0513 2.4949 -1.8947 11 1 6.2590 2.3778 -3.1453 12 1 8.0692 3.5647 -2.0514 13 1 7.7297 1.2036 -1.6160 14 6 2.1993 1.5282 2.4072 15 7 2.9841 1.0200 3.5349 16 6 3.0779 -0.3965 3.9071 17 6 4.3154 -0.4974 4.8293 18 1 5.2128 -0.7386 4.2595 19 6 4.0832 -1.5227 5.9409 20 6 5.2153 -2.5068 6.2421 21 6 3.9488 -2.9906 5.5313 22 6 4.3942 0.9353 5.4055 23 6 3.7063 1.7918 4.3653 24 8 3.7936 2.9992 4.2916 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9354 -0.0045 27 1 1.8500 -0.9353 -0.0004 28 1 2.6504 1.3859 -0.9149 29 1 1.3562 2.1330 0.0522 30 1 3.4694 3.3593 0.8039 31 1 4.5486 2.4964 1.9258 32 1 6.8226 4.6308 -0.0330 33 1 1.9891 2.5869 2.5585 34 1 1.2610 0.9774 2.3401 35 1 2.1798 -0.7065 4.4413 36 1 3.2201 -1.0115 3.0183 37 1 3.4799 -1.1772 6.7805 38 1 6.1254 -2.4242 5.6481 39 1 5.3566 -2.8091 7.2798 40 1 3.2575 -3.6112 6.1016 41 1 4.0255 -3.2260 4.4697 42 1 5.4333 1.2417 5.5254 43 1 3.8674 0.9952 6.3578 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793560792.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:46 Heat of formation + Delta-G solvation = -0.735398 kcal Electronic energy + Delta-G solvation = -22289.080803 eV Core-core repulsion = 19141.837756 eV Total energy + Delta-G solvation = -3147.243047 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.50282 -38.78995 -38.47311 -36.54911 -35.05969 -34.05137 -32.38404 -29.22706 -28.45267 -27.36729 -25.60274 -23.95037 -23.05117 -22.46522 -21.08538 -20.58058 -20.32917 -18.64836 -17.87221 -17.42751 -16.88579 -16.56903 -16.25721 -15.90535 -15.57375 -15.12897 -15.08208 -14.72536 -14.36146 -14.15640 -13.97768 -13.78270 -13.61644 -13.21150 -12.78636 -12.72553 -12.64601 -12.61675 -12.45168 -12.24212 -12.09454 -11.80815 -11.67587 -11.38864 -11.21427 -10.85346 -10.67910 -10.61239 -10.29427 -9.77901 -9.17291 -8.21804 -6.35373 1.36275 1.40043 1.41208 1.49288 1.59954 2.15249 2.36871 2.92591 3.08990 3.32603 3.41707 3.60864 3.76724 4.01320 4.12179 4.15529 4.23604 4.29585 4.33347 4.33602 4.49369 4.58596 4.65831 4.71975 4.77456 4.86566 4.91747 4.95525 5.04869 5.17088 5.17778 5.21509 5.21902 5.40781 5.45777 5.54765 5.58950 5.77235 5.86772 6.01479 6.17405 6.32580 6.51818 6.81896 7.22207 7.34760 8.88970 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012723 B = 0.005650 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.161845 B = 4954.662542 C = 5752.735778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.144 4.144 3 C 0.088 3.912 4 N -0.543 5.543 5 C 0.220 3.780 6 C -0.524 4.524 7 H 0.069 0.931 8 C -0.003 4.003 9 N -0.937 5.937 10 Si 0.974 3.026 11 H -0.263 1.263 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.291 3.709 15 N -0.605 5.605 16 C 0.117 3.883 17 C -0.058 4.058 18 H 0.078 0.922 19 C -0.141 4.141 20 C -0.180 4.180 21 C -0.170 4.170 22 C -0.134 4.134 23 C 0.496 3.504 24 O -0.592 6.592 25 H 0.094 0.906 26 H 0.124 0.876 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.025 0.975 30 H -0.054 1.054 31 H -0.003 1.003 32 H 0.263 0.737 33 H 0.021 0.979 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.825 -16.975 9.959 21.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.162 4.162 3 C -0.040 4.040 4 N -0.269 5.269 5 C 0.093 3.907 6 C -0.562 4.562 7 H 0.087 0.913 8 C -0.201 4.201 9 N -0.577 5.577 10 Si 0.798 3.202 11 H -0.187 1.187 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.079 3.921 15 N -0.338 5.338 16 C -0.005 4.005 17 C -0.077 4.077 18 H 0.096 0.904 19 C -0.160 4.160 20 C -0.217 4.217 21 C -0.207 4.207 22 C -0.174 4.174 23 C 0.285 3.715 24 O -0.473 6.473 25 H 0.112 0.888 26 H 0.142 0.858 27 H 0.134 0.866 28 H 0.090 0.910 29 H 0.043 0.957 30 H -0.037 1.037 31 H 0.016 0.984 32 H 0.072 0.928 33 H 0.039 0.961 34 H 0.132 0.868 35 H 0.117 0.883 36 H 0.097 0.903 37 H 0.141 0.859 38 H 0.105 0.895 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.484 -16.627 9.894 21.126 hybrid contribution 0.590 1.603 -0.897 1.929 sum -7.894 -15.023 8.998 19.209 Atomic orbital electron populations 1.24000 0.94917 1.02808 1.00082 1.22818 0.95884 0.97266 1.00272 1.21108 0.93758 0.95268 0.93844 1.61887 1.14936 1.48206 1.01888 1.19240 0.89502 0.86111 0.95819 1.21423 1.13113 1.06507 1.15158 0.91301 1.26056 0.99480 0.94629 0.99908 1.70173 1.32427 1.12809 1.42295 0.85369 0.78008 0.77920 0.78904 1.18721 1.21062 1.19025 1.21673 0.91845 0.96566 0.82013 1.48443 1.48244 1.09555 1.27573 1.22272 0.99189 0.79868 0.99138 1.21677 0.97857 0.92720 0.95491 0.90366 1.22121 1.04212 0.90167 0.99460 1.23089 0.93039 1.03366 1.02228 1.23031 1.00579 0.95582 1.01537 1.22376 1.02379 0.94381 0.98270 1.21879 0.78447 0.87319 0.83871 1.90709 1.64551 1.16436 1.75577 0.88787 0.85804 0.86606 0.90997 0.95689 1.03688 0.98447 0.92824 0.96117 0.86758 0.88261 0.90259 0.85851 0.89467 0.87463 0.87129 0.88933 0.88736 0.85183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.94 14.24 67.78 0.96 -2.97 16 2 C -0.14 -4.04 8.77 25.65 0.22 -3.82 16 3 C 0.09 3.38 5.24 85.56 0.45 3.83 16 4 N -0.54 -24.10 4.54 -917.76 -4.17 -28.27 16 5 C 0.22 12.74 4.57 85.56 0.39 13.13 16 6 C -0.52 -31.02 8.29 25.60 0.21 -30.81 16 7 H 0.07 3.89 7.25 -2.91 -0.02 3.87 16 8 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 9 N -0.94 -60.82 13.29 21.45 0.28 -60.54 16 10 Si 0.97 45.88 29.54 68.60 2.03 47.90 16 11 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 14 C 0.29 11.24 5.62 170.81 0.96 12.20 16 15 N -0.61 -21.45 3.07 -828.69 -2.54 -23.99 16 16 C 0.12 2.84 6.77 86.90 0.59 3.43 16 17 C -0.06 -1.29 3.30 -9.68 -0.03 -1.32 16 18 H 0.08 1.97 8.00 -2.38 -0.02 1.95 16 19 C -0.14 -2.09 5.05 -10.80 -0.05 -2.15 16 20 C -0.18 -2.50 10.20 30.62 0.31 -2.19 16 21 C -0.17 -2.18 10.10 30.62 0.31 -1.87 16 22 C -0.13 -3.64 6.41 30.59 0.20 -3.44 16 23 C 0.50 19.90 7.25 87.90 0.64 20.54 16 24 O -0.59 -31.01 16.89 -3.03 -0.05 -31.07 16 25 H 0.09 2.04 7.84 -2.91 -0.02 2.01 16 26 H 0.12 2.02 8.06 -2.91 -0.02 1.99 16 27 H 0.12 3.12 8.06 -2.91 -0.02 3.10 16 28 H 0.07 3.13 6.59 -2.39 -0.02 3.11 16 29 H 0.02 0.95 7.70 -2.38 -0.02 0.93 16 30 H -0.05 -3.56 8.12 -2.39 -0.02 -3.58 16 31 H 0.00 -0.17 6.59 -2.39 -0.02 -0.19 16 32 H 0.26 16.06 8.31 -92.70 -0.77 15.29 16 33 H 0.02 0.94 7.53 -2.39 -0.02 0.93 16 34 H 0.11 3.49 7.01 -2.39 -0.02 3.48 16 35 H 0.10 1.80 7.89 -2.39 -0.02 1.78 16 36 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.12 1.48 7.89 -2.39 -0.02 1.47 16 38 H 0.09 1.37 8.10 -2.39 -0.02 1.36 16 39 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.13 2.68 7.73 -2.39 -0.02 2.66 16 Total: -1.00 -79.69 353.30 2.13 -77.56 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.96 Total: 13.55 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 5.62 Total: 4.85 kcal Atomic # 7 Polarization: -106.38 SS G_CDS: -6.43 Total: -112.80 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.05 Total: -31.07 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.90 kcal Total: -79.69 2.13 -77.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793560792.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.822 kcal (2) G-P(sol) polarization free energy of solvation -79.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds