Wall clock time and date at job start Tue Mar 31 2020 01:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99860 * 2 1 4 4 N 1.46899 * 109.47275 * 124.07892 * 3 2 1 5 5 C 1.46899 * 110.99818 * 300.51655 * 4 3 2 6 6 C 1.50709 * 109.46678 * 288.40691 * 5 4 3 7 7 H 1.07991 * 120.00218 * 356.26704 * 6 5 4 8 8 C 1.37878 * 119.99711 * 176.26311 * 6 5 4 9 9 N 1.31518 * 119.99881 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00098 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47382 * 89.99942 * 10 8 6 12 12 H 1.48500 * 109.47379 * 209.99604 * 10 8 6 13 13 H 1.48501 * 109.47113 * 329.99871 * 10 8 6 14 14 C 1.46902 * 110.99953 * 64.46458 * 4 3 2 15 15 N 1.46498 * 109.46781 * 81.04893 * 14 4 3 16 16 C 1.46768 * 124.35204 * 90.00325 * 15 14 4 17 17 C 1.54479 * 105.47351 * 162.96292 * 16 15 14 18 18 H 1.08999 * 110.96948 * 143.53384 * 17 16 15 19 19 C 1.53002 * 110.96537 * 267.29088 * 17 16 15 20 20 C 1.53006 * 117.50104 * 248.62247 * 19 17 16 21 21 C 1.52998 * 60.00000 * 252.51134 * 20 19 17 22 22 C 1.54626 * 101.76894 * 25.40832 * 17 16 15 23 23 C 1.34421 * 124.34958 * 269.96905 * 15 14 4 24 24 O 1.21279 * 124.94263 * 0.46003 * 23 15 14 25 25 H 1.08005 * 119.99519 * 180.02562 * 1 2 3 26 26 H 1.08001 * 120.00089 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.00089 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47329 * 4.07333 * 3 2 1 29 29 H 1.08999 * 109.46759 * 244.07633 * 3 2 1 30 30 H 1.08994 * 109.47411 * 48.40843 * 5 4 3 31 31 H 1.09001 * 109.46854 * 168.41443 * 5 4 3 32 32 H 0.96999 * 119.99734 * 180.02562 * 9 8 6 33 33 H 1.08996 * 109.47255 * 321.05033 * 14 4 3 34 34 H 1.09001 * 109.47019 * 201.04105 * 14 4 3 35 35 H 1.09006 * 110.24127 * 281.95704 * 16 15 14 36 36 H 1.08990 * 110.24660 * 43.95495 * 16 15 14 37 37 H 1.09005 * 115.54829 * 34.33230 * 19 17 16 38 38 H 1.08999 * 117.49633 * 0.02562 * 20 19 17 39 39 H 1.09003 * 117.49532 * 145.01757 * 20 19 17 40 40 H 1.09005 * 117.49779 * 252.50783 * 21 20 19 41 41 H 1.08998 * 117.49834 * 107.49267 * 21 20 19 42 42 H 1.08995 * 110.48793 * 216.52765 * 22 17 16 43 43 H 1.09008 * 110.59298 * 93.94186 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9804 1.3412 1.1471 5 6 2.2459 1.2098 2.4125 6 6 1.4772 2.4780 2.6811 7 1 1.5763 3.3211 2.0136 8 6 0.6474 2.5616 3.7790 9 7 -0.0239 3.6681 4.0131 10 14 0.4764 1.1034 4.9338 11 1 1.4967 1.2007 6.0085 12 1 -0.8802 1.1065 5.5378 13 1 0.6769 -0.1563 4.1735 14 6 4.0137 0.3038 1.0280 15 7 5.0744 0.7717 0.1325 16 6 6.2622 1.5133 0.5722 17 6 7.2706 1.4046 -0.5930 18 1 7.8387 2.3282 -0.7046 19 6 8.2057 0.2093 -0.3982 20 6 9.6770 0.5046 -0.0999 21 6 9.2683 -0.0385 -1.4707 22 6 6.3327 1.1822 -1.8021 23 6 5.0853 0.5765 -1.1974 24 8 4.2206 -0.0008 -1.8218 25 1 -0.5399 -0.9354 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3575 2.1323 0.0730 29 1 2.6342 1.3951 -0.9243 30 1 1.5522 0.3719 2.3446 31 1 2.9507 1.0332 3.2250 32 1 -0.6074 3.7271 4.7857 33 1 3.5704 -0.6055 0.6222 34 1 4.4343 0.0954 2.0118 35 1 6.0086 2.5575 0.7553 36 1 6.6768 1.0615 1.4733 37 1 7.7601 -0.6631 0.0799 38 1 9.9788 1.5503 -0.0421 39 1 10.1997 -0.1736 0.5747 40 1 9.5222 -1.0739 -1.6979 41 1 9.3014 0.6500 -2.3150 42 1 6.7853 0.4921 -2.5141 43 1 6.1002 2.1306 -2.2865 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793560793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:50 Heat of formation + Delta-G solvation = 27.071033 kcal Electronic energy + Delta-G solvation = -22269.621024 eV Core-core repulsion = 19123.583754 eV Total energy + Delta-G solvation = -3146.037270 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.47922 -37.86852 -37.10581 -35.52128 -32.76004 -32.48611 -31.01370 -27.82230 -27.56420 -26.02547 -23.76128 -22.86250 -22.55402 -20.83854 -20.29242 -19.63502 -18.50234 -16.82925 -16.47884 -16.32615 -15.75352 -15.23350 -14.98215 -14.61386 -14.08117 -14.01312 -13.88776 -13.40551 -13.11610 -12.77281 -12.59988 -12.41123 -12.30229 -11.78553 -11.76946 -11.62013 -11.25794 -11.10114 -11.01686 -10.71273 -10.58251 -10.48804 -10.46228 -10.25585 -9.96648 -9.49361 -9.36533 -8.71092 -8.58809 -8.52920 -7.42083 -6.04701 -4.01453 2.80782 2.93022 3.25479 3.27189 3.35640 3.37252 3.49629 4.26085 4.41860 4.42290 4.47112 4.67519 4.87520 4.91426 4.97967 5.19895 5.26910 5.28089 5.38785 5.46364 5.55775 5.58166 5.63442 5.67897 5.71755 5.78425 5.85773 5.89612 5.96037 6.04089 6.20126 6.46102 6.62317 6.70364 6.78617 7.00695 7.22107 7.35997 7.39422 7.58944 7.88236 7.98116 8.43382 8.66366 9.04742 9.57126 11.08541 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022164 B = 0.004565 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.010819 B = 6132.501444 C = 6815.331824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.173 4.173 3 C 0.092 3.908 4 N -0.534 5.534 5 C 0.163 3.837 6 C -0.502 4.502 7 H 0.079 0.921 8 C 0.070 3.930 9 N -0.900 5.900 10 Si 0.871 3.129 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.280 3.720 15 N -0.601 5.601 16 C 0.113 3.887 17 C -0.070 4.070 18 H 0.096 0.904 19 C -0.145 4.145 20 C -0.176 4.176 21 C -0.179 4.179 22 C -0.149 4.149 23 C 0.516 3.484 24 O -0.536 6.536 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.002 0.998 31 H 0.020 0.980 32 H 0.263 0.737 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.189 -6.821 -8.684 20.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.192 4.192 3 C -0.036 4.036 4 N -0.258 5.258 5 C 0.037 3.963 6 C -0.541 4.541 7 H 0.097 0.903 8 C -0.131 4.131 9 N -0.540 5.540 10 Si 0.698 3.302 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.191 1.191 14 C 0.069 3.931 15 N -0.335 5.335 16 C -0.011 4.011 17 C -0.089 4.089 18 H 0.114 0.886 19 C -0.163 4.163 20 C -0.213 4.213 21 C -0.216 4.216 22 C -0.189 4.189 23 C 0.304 3.696 24 O -0.413 6.413 25 H 0.103 0.897 26 H 0.118 0.882 27 H 0.113 0.887 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.020 0.980 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.789 -6.604 -8.796 20.071 hybrid contribution -0.582 -1.467 0.890 1.811 sum 16.207 -8.071 -7.906 19.756 Atomic orbital electron populations 1.23738 0.96017 1.01246 1.01276 1.23471 0.96576 0.99703 0.99494 1.21263 0.94700 0.94436 0.93174 1.61983 1.14041 1.45773 1.04013 1.20210 0.92673 0.97946 0.85481 1.20955 1.23876 0.98682 1.10551 0.90260 1.24861 0.95322 0.95535 0.97423 1.69891 1.29021 1.26299 1.28760 0.86929 0.77651 0.84024 0.81593 1.20263 1.21208 1.19148 1.21876 0.86145 0.92209 0.92857 1.48411 1.21933 1.55481 1.07698 1.22064 0.84231 0.97777 0.96999 1.21743 0.94864 0.97755 0.94527 0.88596 1.22260 0.90201 0.99802 1.04047 1.23009 0.97073 1.02179 0.99044 1.22940 1.03610 1.02177 0.92904 1.22395 0.94795 1.03242 0.98490 1.20799 0.87411 0.78969 0.82468 1.90712 1.42030 1.43355 1.65217 0.89692 0.88200 0.88700 0.89630 0.91134 0.97985 0.96235 0.92715 0.92362 0.89875 0.90330 0.90404 0.87660 0.88580 0.88899 0.88913 0.88628 0.88355 0.87942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.46 14.32 29.01 0.42 -3.04 16 2 C -0.17 -3.38 7.40 -36.03 -0.27 -3.64 16 3 C 0.09 1.90 5.57 -4.97 -0.03 1.87 16 4 N -0.53 -11.11 4.76 -241.43 -1.15 -12.26 16 5 C 0.16 3.86 3.65 -4.97 -0.02 3.85 16 6 C -0.50 -14.05 9.10 -34.44 -0.31 -14.37 16 7 H 0.08 2.45 7.84 -52.49 -0.41 2.04 16 8 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 9 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 10 Si 0.87 21.32 27.54 -169.99 -4.68 16.64 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.33 6.44 56.52 0.36 -5.96 16 14 C 0.28 4.85 5.63 -63.32 -0.36 4.49 16 15 N -0.60 -8.91 3.15 -175.91 -0.55 -9.46 16 16 C 0.11 1.28 6.90 -3.12 -0.02 1.26 16 17 C -0.07 -0.62 3.28 -88.99 -0.29 -0.91 16 18 H 0.10 0.69 8.01 -51.93 -0.42 0.27 16 19 C -0.14 -1.19 5.02 -90.61 -0.45 -1.64 16 20 C -0.18 -1.21 10.20 -26.73 -0.27 -1.48 16 21 C -0.18 -1.27 9.79 -26.73 -0.26 -1.53 16 22 C -0.15 -1.58 6.37 -26.74 -0.17 -1.75 16 23 C 0.52 7.91 7.30 -10.86 -0.08 7.83 16 24 O -0.54 -10.23 16.15 5.56 0.09 -10.14 16 25 H 0.08 1.40 8.06 -52.48 -0.42 0.98 16 26 H 0.10 1.93 7.84 -52.49 -0.41 1.51 16 27 H 0.10 1.80 6.68 -52.49 -0.35 1.45 16 28 H 0.09 1.95 6.99 -51.93 -0.36 1.58 16 29 H 0.07 1.46 5.82 -51.93 -0.30 1.15 16 30 H 0.00 0.06 5.50 -51.93 -0.29 -0.23 16 31 H 0.02 0.46 7.26 -51.93 -0.38 0.08 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.06 1.05 5.81 -51.93 -0.30 0.74 16 34 H 0.08 1.32 7.55 -51.93 -0.39 0.93 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.08 0.80 7.91 -51.93 -0.41 0.39 16 37 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.10 0.59 8.11 -51.93 -0.42 0.17 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.10 0.96 7.55 -51.93 -0.39 0.57 16 43 H 0.10 1.00 8.14 -51.92 -0.42 0.57 16 LS Contribution 344.30 15.07 5.19 5.19 Total: -1.00 -32.04 344.30 -9.52 -41.55 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -6.97 Total: 2.26 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -2.22 Total: -7.16 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.93 Total: -48.34 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.68 Total: 16.64 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.04 -9.52 -41.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793560793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.626 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds