Wall clock time and date at job start Tue Mar 31 2020 01:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99860 * 2 1 4 4 N 1.46899 * 109.47275 * 124.07892 * 3 2 1 5 5 C 1.46899 * 110.99818 * 300.51655 * 4 3 2 6 6 C 1.50709 * 109.46678 * 288.40691 * 5 4 3 7 7 H 1.07991 * 120.00218 * 356.26704 * 6 5 4 8 8 C 1.37878 * 119.99711 * 176.26311 * 6 5 4 9 9 N 1.31518 * 119.99881 * 180.02562 * 8 6 5 10 10 Si 1.86796 * 120.00098 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47382 * 89.99942 * 10 8 6 12 12 H 1.48500 * 109.47379 * 209.99604 * 10 8 6 13 13 H 1.48501 * 109.47113 * 329.99871 * 10 8 6 14 14 C 1.46902 * 110.99953 * 64.46458 * 4 3 2 15 15 N 1.46498 * 109.46781 * 81.04893 * 14 4 3 16 16 C 1.46768 * 124.35204 * 90.00325 * 15 14 4 17 17 C 1.54479 * 105.47351 * 162.96292 * 16 15 14 18 18 H 1.08999 * 110.96948 * 143.53384 * 17 16 15 19 19 C 1.53002 * 110.96537 * 267.29088 * 17 16 15 20 20 C 1.53006 * 117.50104 * 248.62247 * 19 17 16 21 21 C 1.52998 * 60.00000 * 252.51134 * 20 19 17 22 22 C 1.54626 * 101.76894 * 25.40832 * 17 16 15 23 23 C 1.34421 * 124.34958 * 269.96905 * 15 14 4 24 24 O 1.21279 * 124.94263 * 0.46003 * 23 15 14 25 25 H 1.08005 * 119.99519 * 180.02562 * 1 2 3 26 26 H 1.08001 * 120.00089 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.00089 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47329 * 4.07333 * 3 2 1 29 29 H 1.08999 * 109.46759 * 244.07633 * 3 2 1 30 30 H 1.08994 * 109.47411 * 48.40843 * 5 4 3 31 31 H 1.09001 * 109.46854 * 168.41443 * 5 4 3 32 32 H 0.96999 * 119.99734 * 180.02562 * 9 8 6 33 33 H 1.08996 * 109.47255 * 321.05033 * 14 4 3 34 34 H 1.09001 * 109.47019 * 201.04105 * 14 4 3 35 35 H 1.09006 * 110.24127 * 281.95704 * 16 15 14 36 36 H 1.08990 * 110.24660 * 43.95495 * 16 15 14 37 37 H 1.09005 * 115.54829 * 34.33230 * 19 17 16 38 38 H 1.08999 * 117.49633 * 0.02562 * 20 19 17 39 39 H 1.09003 * 117.49532 * 145.01757 * 20 19 17 40 40 H 1.09005 * 117.49779 * 252.50783 * 21 20 19 41 41 H 1.08998 * 117.49834 * 107.49267 * 21 20 19 42 42 H 1.08995 * 110.48793 * 216.52765 * 22 17 16 43 43 H 1.09008 * 110.59298 * 93.94186 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9804 1.3412 1.1471 5 6 2.2459 1.2098 2.4125 6 6 1.4772 2.4780 2.6811 7 1 1.5763 3.3211 2.0136 8 6 0.6474 2.5616 3.7790 9 7 -0.0239 3.6681 4.0131 10 14 0.4764 1.1034 4.9338 11 1 1.4967 1.2007 6.0085 12 1 -0.8802 1.1065 5.5378 13 1 0.6769 -0.1563 4.1735 14 6 4.0137 0.3038 1.0280 15 7 5.0744 0.7717 0.1325 16 6 6.2622 1.5133 0.5722 17 6 7.2706 1.4046 -0.5930 18 1 7.8387 2.3282 -0.7046 19 6 8.2057 0.2093 -0.3982 20 6 9.6770 0.5046 -0.0999 21 6 9.2683 -0.0385 -1.4707 22 6 6.3327 1.1822 -1.8021 23 6 5.0853 0.5765 -1.1974 24 8 4.2206 -0.0008 -1.8218 25 1 -0.5399 -0.9354 0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3575 2.1323 0.0730 29 1 2.6342 1.3951 -0.9243 30 1 1.5522 0.3719 2.3446 31 1 2.9507 1.0332 3.2250 32 1 -0.6074 3.7271 4.7857 33 1 3.5704 -0.6055 0.6222 34 1 4.4343 0.0954 2.0118 35 1 6.0086 2.5575 0.7553 36 1 6.6768 1.0615 1.4733 37 1 7.7601 -0.6631 0.0799 38 1 9.9788 1.5503 -0.0421 39 1 10.1997 -0.1736 0.5747 40 1 9.5222 -1.0739 -1.6979 41 1 9.3014 0.6500 -2.3150 42 1 6.7853 0.4921 -2.5141 43 1 6.1002 2.1306 -2.2865 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793560793.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:49 Heat of formation + Delta-G solvation = 6.738877 kcal Electronic energy + Delta-G solvation = -22270.502692 eV Core-core repulsion = 19123.583754 eV Total energy + Delta-G solvation = -3146.918938 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.56891 -39.03103 -38.39644 -36.57870 -34.80071 -33.95822 -32.35769 -29.68861 -28.54487 -27.49903 -25.33072 -23.83342 -23.09497 -22.61614 -21.05340 -21.01690 -19.89882 -18.87126 -17.65142 -17.42741 -17.08467 -16.53305 -16.15906 -15.96740 -15.71858 -15.55732 -14.99704 -14.69572 -14.49540 -14.20208 -13.99862 -13.58888 -13.41852 -13.18558 -12.97271 -12.75788 -12.48270 -12.36864 -12.36293 -12.27061 -12.24356 -11.89503 -11.74720 -11.52884 -11.09721 -10.99954 -10.75902 -10.58304 -10.28977 -9.81506 -9.07636 -8.25597 -6.28106 1.34269 1.35060 1.38295 1.47419 1.63984 2.10101 2.35811 2.89980 3.08456 3.32211 3.46038 3.60851 3.76608 3.96363 3.99272 4.08912 4.22911 4.27722 4.31922 4.35822 4.50476 4.54690 4.60129 4.72728 4.82134 4.84953 4.90251 4.90628 4.95403 4.97058 5.11026 5.14342 5.21334 5.37464 5.40406 5.49848 5.53793 5.64280 5.80212 6.02508 6.14930 6.35706 6.61287 6.76955 7.23788 7.34966 8.91285 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022164 B = 0.004565 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.010819 B = 6132.501444 C = 6815.331824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.183 4.183 3 C 0.102 3.898 4 N -0.544 5.544 5 C 0.176 3.824 6 C -0.506 4.506 7 H 0.032 0.968 8 C 0.012 3.988 9 N -0.949 5.949 10 Si 0.941 3.059 11 H -0.262 1.262 12 H -0.286 1.286 13 H -0.250 1.250 14 C 0.282 3.718 15 N -0.603 5.603 16 C 0.107 3.893 17 C -0.052 4.052 18 H 0.122 0.878 19 C -0.158 4.158 20 C -0.167 4.167 21 C -0.177 4.177 22 C -0.140 4.140 23 C 0.504 3.496 24 O -0.580 6.580 25 H 0.114 0.886 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.001 0.999 31 H 0.033 0.967 32 H 0.266 0.734 33 H 0.052 0.948 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.365 -8.448 -8.317 22.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.203 4.203 3 C -0.026 4.026 4 N -0.269 5.269 5 C 0.049 3.951 6 C -0.545 4.545 7 H 0.050 0.950 8 C -0.185 4.185 9 N -0.590 5.590 10 Si 0.765 3.235 11 H -0.187 1.187 12 H -0.211 1.211 13 H -0.174 1.174 14 C 0.070 3.930 15 N -0.337 5.337 16 C -0.015 4.015 17 C -0.071 4.071 18 H 0.140 0.860 19 C -0.176 4.176 20 C -0.204 4.204 21 C -0.213 4.213 22 C -0.180 4.180 23 C 0.293 3.707 24 O -0.461 6.461 25 H 0.132 0.868 26 H 0.105 0.895 27 H 0.124 0.876 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.019 0.981 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.125 0.875 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.123 0.877 42 H 0.129 0.871 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 19.020 -8.226 -8.440 22.376 hybrid contribution -1.241 -0.882 0.696 1.674 sum 17.779 -9.108 -7.744 21.425 Atomic orbital electron populations 1.23904 0.95856 1.02004 0.99955 1.23433 0.96881 0.99261 1.00679 1.21027 0.94240 0.94175 0.93132 1.61894 1.14349 1.47824 1.02828 1.19941 0.92646 0.95316 0.87229 1.21129 1.24543 0.99105 1.09674 0.94969 1.25755 0.94817 0.98610 0.99322 1.70052 1.30215 1.28919 1.29803 0.85802 0.77879 0.80441 0.79388 1.18664 1.21138 1.17411 1.21833 0.85841 0.90987 0.94304 1.48498 1.22121 1.55454 1.07591 1.22286 0.83534 0.96926 0.98743 1.21707 0.94081 0.99266 0.92030 0.86027 1.22160 0.90775 0.99172 1.05497 1.23084 0.95552 1.02940 0.98807 1.23018 1.02466 1.02620 0.93241 1.22413 0.92746 1.03555 0.99247 1.21662 0.88287 0.78237 0.82528 1.90676 1.43983 1.45319 1.66114 0.86831 0.89527 0.87647 0.92892 0.91354 0.98136 0.94855 0.92553 0.92966 0.88127 0.91077 0.89056 0.89025 0.87481 0.88555 0.88817 0.87695 0.87125 0.86742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.63 14.32 67.78 0.97 -5.66 16 2 C -0.18 -7.14 7.40 25.64 0.19 -6.95 16 3 C 0.10 4.35 5.57 85.56 0.48 4.83 16 4 N -0.54 -22.78 4.76 -917.75 -4.37 -27.15 16 5 C 0.18 8.25 3.65 85.56 0.31 8.56 16 6 C -0.51 -29.04 9.10 25.60 0.23 -28.81 16 7 H 0.03 2.10 7.84 -2.92 -0.02 2.07 16 8 C 0.01 0.70 5.47 84.65 0.46 1.16 16 9 N -0.95 -59.20 13.96 21.45 0.30 -58.90 16 10 Si 0.94 43.47 27.54 68.60 1.89 45.36 16 11 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 12 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 13 H -0.25 -10.83 6.44 99.48 0.64 -10.19 16 14 C 0.28 9.50 5.63 170.81 0.96 10.46 16 15 N -0.60 -17.35 3.15 -829.04 -2.61 -19.96 16 16 C 0.11 2.24 6.90 86.83 0.60 2.83 16 17 C -0.05 -0.78 3.28 -9.74 -0.03 -0.81 16 18 H 0.12 1.26 8.01 -2.39 -0.02 1.24 16 19 C -0.16 -2.17 5.02 -10.79 -0.05 -2.23 16 20 C -0.17 -1.76 10.20 30.60 0.31 -1.45 16 21 C -0.18 -1.99 9.79 30.59 0.30 -1.69 16 22 C -0.14 -2.69 6.37 30.59 0.19 -2.49 16 23 C 0.50 15.11 7.30 87.90 0.64 15.75 16 24 O -0.58 -22.28 16.15 -3.03 -0.05 -22.33 16 25 H 0.11 3.52 8.06 -2.91 -0.02 3.50 16 26 H 0.09 3.41 7.84 -2.91 -0.02 3.39 16 27 H 0.11 3.91 6.68 -2.91 -0.02 3.89 16 28 H 0.05 2.56 6.99 -2.39 -0.02 2.54 16 29 H 0.07 2.92 5.82 -2.39 -0.01 2.91 16 30 H 0.00 0.04 5.50 -2.39 -0.01 0.03 16 31 H 0.03 1.49 7.26 -2.39 -0.02 1.47 16 32 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 33 H 0.05 1.84 5.81 -2.39 -0.01 1.82 16 34 H 0.10 3.01 7.55 -2.39 -0.02 2.99 16 35 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.09 1.67 7.91 -2.39 -0.02 1.65 16 37 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.11 0.92 8.11 -2.39 -0.02 0.90 16 39 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.11 1.89 7.55 -2.39 -0.02 1.87 16 43 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -71.41 344.30 1.64 -69.76 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.91 Total: 19.69 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: 5.57 Total: -6.48 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -6.67 Total: -106.01 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.05 Total: -22.33 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.89 Total: 45.36 kcal Total: -71.41 1.64 -69.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793560793.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.501 kcal (2) G-P(sol) polarization free energy of solvation -71.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds