Wall clock time and date at job start Tue Mar 31 2020 01:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46901 * 109.46794 * 94.09206 * 3 2 1 5 5 C 1.46906 * 110.99681 * 189.99849 * 4 3 2 6 6 C 1.53242 * 109.33730 * 187.25246 * 5 4 3 7 7 N 1.47080 * 108.52053 * 306.16696 * 6 5 4 8 8 C 1.34777 * 120.88393 * 231.18783 * 7 6 5 9 9 O 1.21288 * 119.99593 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00369 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47466 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47116 * 59.99479 * 18 16 14 20 20 H 1.48490 * 109.47381 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46756 * 300.00079 * 18 16 14 22 22 C 1.47083 * 118.23602 * 51.46453 * 7 6 5 23 23 C 1.46898 * 111.00098 * 314.29673 * 4 3 2 24 24 H 4.40881 * 5.52220 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47431 * 334.09028 * 3 2 1 26 26 H 1.08999 * 109.46733 * 214.08687 * 3 2 1 27 27 H 1.08998 * 109.49162 * 67.29455 * 5 4 3 28 28 H 1.08996 * 109.49528 * 307.21389 * 5 4 3 29 29 H 1.09000 * 109.62497 * 186.46160 * 6 5 4 30 30 H 1.08993 * 109.62991 * 65.88399 * 6 5 4 31 31 H 1.09002 * 109.47120 * 59.99760 * 10 8 7 32 32 H 1.08998 * 109.46862 * 300.00562 * 10 8 7 33 33 H 1.09002 * 109.47153 * 59.99773 * 11 10 8 34 34 H 1.09001 * 109.46832 * 299.99964 * 11 10 8 35 35 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 36 36 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 37 37 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 38 38 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 39 39 H 0.97000 * 119.99425 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.63083 * 68.24728 * 22 7 6 41 41 H 1.09003 * 109.62649 * 188.82850 * 22 7 6 42 42 H 1.09003 * 109.49537 * 292.71141 * 23 4 3 43 43 H 1.09004 * 109.48981 * 52.78984 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1356 0.0997 -1.3815 5 6 4.5846 -0.1339 -1.4445 6 6 5.0839 0.1552 -2.8642 7 7 4.2845 -0.6372 -3.8109 8 6 4.8794 -1.4128 -4.7388 9 8 6.0896 -1.4643 -4.8006 10 6 4.0410 -2.2161 -5.6995 11 6 4.9558 -3.0031 -6.6400 12 6 4.1045 -3.8181 -7.6157 13 6 5.0194 -4.6055 -8.5558 14 6 4.1810 -5.4088 -9.5164 15 1 3.1033 -5.3626 -9.4616 16 6 4.7895 -6.2027 -10.4653 17 7 6.1018 -6.2585 -10.5324 18 14 3.7503 -7.1978 -11.6566 19 1 2.8938 -6.2812 -12.4514 20 1 4.6381 -7.9622 -12.5689 21 1 2.8924 -8.1416 -10.8959 22 6 2.8186 -0.5559 -3.7223 23 6 2.4084 -0.8215 -2.2650 24 1 -1.0500 0.0002 0.0000 25 1 3.0098 -0.9235 0.4490 26 1 3.0089 0.8519 0.5760 27 1 4.7971 -1.1718 -1.1884 28 1 5.0904 0.5260 -0.7397 29 1 6.1339 -0.1254 -2.9472 30 1 4.9670 1.2162 -3.0845 31 1 3.4117 -1.5436 -6.2825 32 1 3.4119 -2.9091 -5.1409 33 1 5.5847 -3.6756 -6.0566 34 1 5.5851 -2.3102 -7.1986 35 1 3.4749 -4.5109 -7.0574 36 1 3.4759 -3.1453 -8.1990 37 1 5.6493 -3.9130 -9.1142 38 1 5.6477 -5.2784 -7.9722 39 1 6.5299 -6.8167 -11.2002 40 1 2.4880 0.4381 -4.0235 41 1 2.3702 -1.3068 -4.3729 42 1 2.6513 -1.8499 -1.9975 43 1 1.3360 -0.6602 -2.1552 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806621359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:05 Heat of formation + Delta-G solvation = 11.933143 kcal Electronic energy + Delta-G solvation = -20956.238501 eV Core-core repulsion = 17809.544803 eV Total energy + Delta-G solvation = -3146.693698 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.36769 -38.49858 -35.42521 -34.88999 -33.15322 -32.59286 -31.46511 -29.84143 -28.73197 -25.93720 -24.92008 -24.04487 -22.45095 -21.10040 -19.99357 -18.99709 -18.50555 -17.16047 -16.17895 -16.06446 -15.86010 -15.61702 -15.44347 -15.36280 -14.61445 -14.43743 -13.90840 -13.69608 -13.54634 -12.91382 -12.68519 -12.46226 -12.11038 -11.88243 -11.75792 -11.61711 -11.53588 -11.44586 -10.95578 -10.86157 -10.61941 -10.52135 -10.50826 -10.37577 -9.74470 -9.59062 -9.20245 -9.05722 -8.97238 -8.63951 -8.28645 -5.93556 -3.96100 2.23563 2.42114 2.70039 2.86073 3.36287 3.40625 3.42861 3.56087 3.89731 4.38574 4.50196 4.57119 4.69287 4.78335 4.85266 4.95743 5.04839 5.13574 5.16511 5.30344 5.35655 5.38537 5.41672 5.47239 5.52798 5.55469 5.71409 5.87380 6.15558 6.25913 6.34281 6.43555 6.52034 6.57425 6.86043 7.03449 7.17677 7.21485 7.32365 7.75616 7.92115 8.07940 8.21834 8.49631 9.11417 9.67333 11.17765 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029360 B = 0.002637 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.463720 B =10616.403255 C =11374.889094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.187 4.187 3 C 0.162 3.838 4 N -0.535 5.535 5 C 0.042 3.958 6 C 0.116 3.884 7 N -0.624 5.624 8 C 0.515 3.485 9 O -0.535 6.535 10 C -0.138 4.138 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.020 3.980 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.113 3.887 23 C 0.036 3.964 24 H 0.219 0.781 25 H 0.059 0.941 26 H 0.101 0.899 27 H 0.043 0.957 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.042 0.958 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.401 15.182 22.646 28.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.188 4.188 3 C 0.036 3.964 4 N -0.260 5.260 5 C -0.087 4.087 6 C -0.007 4.007 7 N -0.359 5.359 8 C 0.305 3.695 9 O -0.411 6.411 10 C -0.177 4.177 11 C -0.141 4.141 12 C -0.147 4.147 13 C -0.017 4.017 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.010 4.010 23 C -0.092 4.092 24 H 0.236 0.764 25 H 0.077 0.923 26 H 0.119 0.881 27 H 0.061 0.939 28 H 0.108 0.892 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.060 0.940 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.639 15.530 22.329 28.538 hybrid contribution -0.713 -1.341 -0.283 1.545 sum -9.353 14.189 22.047 27.836 Atomic orbital electron populations 1.24971 0.95951 1.00897 0.99128 1.22763 0.94201 1.00617 1.01183 1.19090 0.84888 1.01978 0.90446 1.62083 1.04203 1.52928 1.06759 1.22537 0.87372 1.00571 0.98185 1.21618 0.96737 0.95779 0.86530 1.48281 1.06893 1.46444 1.34310 1.21122 0.88943 0.78762 0.80682 1.90694 1.14700 1.64621 1.71100 1.21818 0.99515 0.99195 0.97221 1.21460 0.97531 0.98513 0.96608 1.21646 0.98523 0.97772 0.96805 1.19091 0.94567 0.94596 0.93450 1.21247 0.92981 1.26061 1.15602 0.92820 1.25045 0.94897 0.96996 0.97644 1.69969 1.08268 1.39969 1.35278 0.86669 0.80139 0.80241 0.80991 1.20276 1.21324 1.20306 1.21934 0.79988 1.03171 0.95947 1.22678 0.99431 0.94337 0.92755 0.76431 0.92321 0.88149 0.93901 0.89196 0.88419 0.90856 0.89118 0.89290 0.91859 0.91775 0.93537 0.93464 0.96580 0.96621 0.92995 0.90474 0.88739 0.93990 0.89044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.28 19.00 29.55 0.56 -0.71 16 2 C -0.19 -1.44 11.50 -37.12 -0.43 -1.87 16 3 C 0.16 1.09 5.77 -6.61 -0.04 1.05 16 4 N -0.53 -4.23 4.76 -237.52 -1.13 -5.36 16 5 C 0.04 0.32 5.58 -3.70 -0.02 0.30 16 6 C 0.12 1.14 6.60 -3.60 -0.02 1.11 16 7 N -0.62 -7.03 3.00 -172.18 -0.52 -7.55 16 8 C 0.52 7.53 7.71 -10.99 -0.08 7.44 16 9 O -0.54 -9.94 15.44 5.55 0.09 -9.85 16 10 C -0.14 -1.90 4.06 -27.89 -0.11 -2.01 16 11 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 12 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 13 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 14 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 15 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.72 13.29 55.43 0.74 -26.99 16 18 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.11 0.97 6.53 -3.36 -0.02 0.95 16 23 C 0.04 0.30 5.27 -3.46 -0.02 0.28 16 24 H 0.22 0.77 7.80 -54.09 -0.42 0.35 16 25 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 26 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.51 8.11 -51.93 -0.42 0.09 16 29 H 0.10 1.09 7.06 -51.93 -0.37 0.72 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.09 7.99 -51.93 -0.41 0.67 16 32 H 0.09 1.07 7.67 -51.93 -0.40 0.67 16 33 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 34 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.72 6.02 -51.93 -0.31 0.41 16 42 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.09 0.70 6.29 -51.93 -0.33 0.38 16 LS Contribution 353.10 15.07 5.32 5.32 Total: -1.00 -34.50 353.10 -8.79 -43.28 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -7.27 Total: -4.47 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -0.99 Total: -11.39 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: -0.91 Total: -39.90 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.50 -8.79 -43.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806621359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.217 kcal (2) G-P(sol) polarization free energy of solvation -34.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds