Wall clock time and date at job start Tue Mar 31 2020 01:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46901 * 109.46794 * 94.09206 * 3 2 1 5 5 C 1.46906 * 110.99681 * 189.99849 * 4 3 2 6 6 C 1.53242 * 109.33730 * 187.25246 * 5 4 3 7 7 N 1.47080 * 108.52053 * 306.16696 * 6 5 4 8 8 C 1.34777 * 120.88393 * 231.18783 * 7 6 5 9 9 O 1.21288 * 119.99593 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00369 * 180.02562 * 8 7 6 11 11 C 1.52997 * 109.47466 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47060 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47291 * 179.97438 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47116 * 59.99479 * 18 16 14 20 20 H 1.48490 * 109.47381 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46756 * 300.00079 * 18 16 14 22 22 C 1.47083 * 118.23602 * 51.46453 * 7 6 5 23 23 C 1.46898 * 111.00098 * 314.29673 * 4 3 2 24 24 H 4.40881 * 5.52220 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47431 * 334.09028 * 3 2 1 26 26 H 1.08999 * 109.46733 * 214.08687 * 3 2 1 27 27 H 1.08998 * 109.49162 * 67.29455 * 5 4 3 28 28 H 1.08996 * 109.49528 * 307.21389 * 5 4 3 29 29 H 1.09000 * 109.62497 * 186.46160 * 6 5 4 30 30 H 1.08993 * 109.62991 * 65.88399 * 6 5 4 31 31 H 1.09002 * 109.47120 * 59.99760 * 10 8 7 32 32 H 1.08998 * 109.46862 * 300.00562 * 10 8 7 33 33 H 1.09002 * 109.47153 * 59.99773 * 11 10 8 34 34 H 1.09001 * 109.46832 * 299.99964 * 11 10 8 35 35 H 1.09001 * 109.47194 * 299.99650 * 12 11 10 36 36 H 1.08992 * 109.47399 * 59.99823 * 12 11 10 37 37 H 1.09001 * 109.47109 * 299.99380 * 13 12 11 38 38 H 1.09002 * 109.47508 * 59.99571 * 13 12 11 39 39 H 0.97000 * 119.99425 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.63083 * 68.24728 * 22 7 6 41 41 H 1.09003 * 109.62649 * 188.82850 * 22 7 6 42 42 H 1.09003 * 109.49537 * 292.71141 * 23 4 3 43 43 H 1.09004 * 109.48981 * 52.78984 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1356 0.0997 -1.3815 5 6 4.5846 -0.1339 -1.4445 6 6 5.0839 0.1552 -2.8642 7 7 4.2845 -0.6372 -3.8109 8 6 4.8794 -1.4128 -4.7388 9 8 6.0896 -1.4643 -4.8006 10 6 4.0410 -2.2161 -5.6995 11 6 4.9558 -3.0031 -6.6400 12 6 4.1045 -3.8181 -7.6157 13 6 5.0194 -4.6055 -8.5558 14 6 4.1810 -5.4088 -9.5164 15 1 3.1033 -5.3626 -9.4616 16 6 4.7895 -6.2027 -10.4653 17 7 6.1018 -6.2585 -10.5324 18 14 3.7503 -7.1978 -11.6566 19 1 2.8938 -6.2812 -12.4514 20 1 4.6381 -7.9622 -12.5689 21 1 2.8924 -8.1416 -10.8959 22 6 2.8186 -0.5559 -3.7223 23 6 2.4084 -0.8215 -2.2650 24 1 -1.0500 0.0002 0.0000 25 1 3.0098 -0.9235 0.4490 26 1 3.0089 0.8519 0.5760 27 1 4.7971 -1.1718 -1.1884 28 1 5.0904 0.5260 -0.7397 29 1 6.1339 -0.1254 -2.9472 30 1 4.9670 1.2162 -3.0845 31 1 3.4117 -1.5436 -6.2825 32 1 3.4119 -2.9091 -5.1409 33 1 5.5847 -3.6756 -6.0566 34 1 5.5851 -2.3102 -7.1986 35 1 3.4749 -4.5109 -7.0574 36 1 3.4759 -3.1453 -8.1990 37 1 5.6493 -3.9130 -9.1142 38 1 5.6477 -5.2784 -7.9722 39 1 6.5299 -6.8167 -11.2002 40 1 2.4880 0.4381 -4.0235 41 1 2.3702 -1.3068 -4.3729 42 1 2.6513 -1.8499 -1.9975 43 1 1.3360 -0.6602 -2.1552 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806621359.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:04 Heat of formation + Delta-G solvation = -10.484820 kcal Electronic energy + Delta-G solvation = -20957.210617 eV Core-core repulsion = 17809.544803 eV Total energy + Delta-G solvation = -3147.665814 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.31154 -39.35531 -36.68645 -36.18397 -34.65697 -33.69786 -32.30693 -31.34787 -29.60083 -27.52274 -25.81496 -24.92779 -23.95396 -22.16742 -21.63344 -19.89740 -19.03162 -18.44056 -18.08278 -17.04374 -16.97488 -16.47811 -16.26901 -16.15981 -15.94411 -15.80794 -14.86122 -14.74380 -14.53359 -14.25467 -13.90710 -13.61145 -13.44914 -13.36936 -13.07145 -12.79060 -12.50585 -12.43391 -12.32529 -12.24883 -12.14343 -12.11040 -11.39154 -11.38222 -11.33250 -11.14882 -11.11967 -10.74054 -10.54089 -9.86588 -9.35215 -8.18205 -6.30544 1.40506 1.44690 1.52544 1.58262 1.70513 1.92424 1.97574 2.42355 2.98675 3.14338 3.44412 3.52088 3.85388 3.94406 4.02100 4.11207 4.16454 4.23150 4.26873 4.44961 4.51557 4.61426 4.65382 4.66078 4.72107 4.79879 4.81352 4.83744 4.88675 5.02487 5.11389 5.17739 5.32249 5.36223 5.47409 5.56619 5.78039 5.84614 5.88139 5.91365 6.25465 6.34687 6.69419 6.87723 7.13942 7.39008 8.93916 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029360 B = 0.002637 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.463720 B =10616.403255 C =11374.889094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.220 4.220 3 C 0.162 3.838 4 N -0.539 5.539 5 C 0.050 3.950 6 C 0.112 3.888 7 N -0.616 5.616 8 C 0.511 3.489 9 O -0.587 6.587 10 C -0.127 4.127 11 C -0.095 4.095 12 C -0.095 4.095 13 C 0.019 3.981 14 C -0.542 4.542 15 H 0.067 0.933 16 C -0.007 4.007 17 N -0.938 5.938 18 Si 0.970 3.030 19 H -0.264 1.264 20 H -0.285 1.285 21 H -0.264 1.264 22 C 0.109 3.891 23 C 0.040 3.960 24 H 0.243 0.757 25 H 0.062 0.938 26 H 0.114 0.886 27 H 0.033 0.967 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.041 0.959 34 H 0.043 0.957 35 H 0.061 0.939 36 H 0.062 0.938 37 H -0.016 1.016 38 H -0.016 1.016 39 H 0.263 0.737 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.033 0.967 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.511 15.742 23.357 30.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.220 4.220 3 C 0.036 3.964 4 N -0.264 5.264 5 C -0.078 4.078 6 C -0.010 4.010 7 N -0.350 5.350 8 C 0.302 3.698 9 O -0.468 6.468 10 C -0.167 4.167 11 C -0.133 4.133 12 C -0.132 4.132 13 C -0.018 4.018 14 C -0.580 4.580 15 H 0.085 0.915 16 C -0.205 4.205 17 N -0.579 5.579 18 Si 0.794 3.206 19 H -0.189 1.189 20 H -0.211 1.211 21 H -0.189 1.189 22 C -0.013 4.013 23 C -0.088 4.088 24 H 0.260 0.740 25 H 0.080 0.920 26 H 0.132 0.868 27 H 0.051 0.949 28 H 0.131 0.869 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.003 0.997 38 H 0.002 0.998 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.127 0.873 42 H 0.051 0.949 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.801 16.120 23.081 30.527 hybrid contribution 0.249 -1.464 -0.444 1.549 sum -11.552 14.657 22.638 29.338 Atomic orbital electron populations 1.25703 0.96797 0.99881 0.97921 1.23140 0.94907 1.01646 1.02315 1.19143 0.84758 1.02730 0.89762 1.62098 1.03989 1.52749 1.07580 1.22464 0.87727 1.00551 0.97098 1.21723 0.95798 0.95991 0.87526 1.48336 1.08325 1.45104 1.33224 1.21228 0.88284 0.79073 0.81257 1.90679 1.16792 1.66573 1.72715 1.21698 0.98660 0.99602 0.96700 1.21244 0.97569 0.97902 0.96576 1.21440 0.97685 0.97800 0.96284 1.19053 0.94847 0.94021 0.93918 1.21726 0.93825 1.26360 1.16095 0.91520 1.26108 0.96222 0.98307 0.99820 1.70133 1.10464 1.40974 1.36297 0.85429 0.78299 0.78600 0.78280 1.18857 1.21098 1.18894 1.22182 0.78007 1.04357 0.96774 1.22635 0.99878 0.93918 0.92379 0.74014 0.92039 0.86846 0.94907 0.86914 0.90290 0.89826 0.86402 0.86666 0.93974 0.93858 0.92071 0.91970 0.99733 0.99782 0.92855 0.89348 0.87330 0.94875 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 19.00 74.32 1.41 -0.62 16 2 C -0.22 -2.95 11.50 31.13 0.36 -2.60 16 3 C 0.16 1.87 5.77 84.50 0.49 2.36 16 4 N -0.54 -7.46 4.76 -905.39 -4.31 -11.77 16 5 C 0.05 0.70 5.58 86.38 0.48 1.18 16 6 C 0.11 2.12 6.60 86.35 0.57 2.69 16 7 N -0.62 -13.13 3.00 -817.03 -2.45 -15.58 16 8 C 0.51 14.73 7.71 87.66 0.68 15.41 16 9 O -0.59 -22.59 15.44 -3.05 -0.05 -22.64 16 10 C -0.13 -3.29 4.06 29.85 0.12 -3.17 16 11 C -0.09 -3.50 4.50 30.59 0.14 -3.37 16 12 C -0.09 -3.90 5.15 30.59 0.16 -3.74 16 13 C 0.02 1.04 4.97 29.85 0.15 1.19 16 14 C -0.54 -31.64 9.11 25.60 0.23 -31.40 16 15 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 16 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 17 N -0.94 -59.50 13.29 21.45 0.28 -59.21 16 18 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 19 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 20 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 21 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 22 C 0.11 1.60 6.53 86.50 0.57 2.16 16 23 C 0.04 0.57 5.27 86.54 0.46 1.03 16 24 H 0.24 0.99 7.80 -4.42 -0.03 0.96 16 25 H 0.06 0.67 8.08 -2.39 -0.02 0.65 16 26 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.11 1.07 8.11 -2.39 -0.02 1.05 16 29 H 0.08 1.81 7.06 -2.39 -0.02 1.80 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.12 2.45 7.99 -2.39 -0.02 2.43 16 32 H 0.12 2.41 7.67 -2.39 -0.02 2.39 16 33 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 34 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 35 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 37 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 38 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 39 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 40 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.11 1.29 6.02 -2.39 -0.01 1.27 16 42 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.10 1.27 6.29 -2.39 -0.02 1.26 16 Total: -1.00 -77.00 353.10 2.72 -74.28 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 0.96 Total: 6.79 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 6.27 Total: -18.86 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -6.48 Total: -86.56 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.05 Total: -22.64 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -77.00 2.72 -74.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806621359.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.798 kcal (2) G-P(sol) polarization free energy of solvation -77.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds