Wall clock time and date at job start Tue Mar 31 2020 00:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35918 * 117.00170 * 2 1 4 4 C 1.38752 * 120.46893 * 0.02562 * 3 2 1 5 5 N 1.31810 * 120.68079 * 179.97438 * 4 3 2 6 6 C 1.31877 * 121.78018 * 359.97438 * 5 4 3 7 7 C 1.38212 * 120.88695 * 359.97438 * 6 5 4 8 8 C 1.50704 * 120.38784 * 179.97438 * 7 6 5 9 9 N 1.46898 * 109.47707 * 270.05044 * 8 7 6 10 10 C 1.46894 * 111.00253 * 190.00068 * 9 8 7 11 11 C 1.50709 * 109.47118 * 155.66084 * 10 9 8 12 12 H 1.07998 * 119.99554 * 2.98454 * 11 10 9 13 13 C 1.37875 * 119.99632 * 182.98427 * 11 10 9 14 14 N 1.31507 * 120.00548 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99731 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47111 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47335 * 119.99742 * 15 13 11 18 18 H 1.48498 * 109.47208 * 240.00129 * 15 13 11 19 19 C 1.46903 * 110.99821 * 66.03939 * 9 8 7 20 20 C 1.53004 * 109.46898 * 197.31245 * 19 9 8 21 21 C 1.52994 * 109.47007 * 60.98937 * 20 19 9 22 22 C 1.53001 * 109.47102 * 180.99010 * 20 19 9 23 23 C 1.38569 * 119.22514 * 0.02807 * 7 6 5 24 24 H 1.08999 * 109.47305 * 60.00150 * 1 2 3 25 25 H 1.09008 * 109.46918 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47307 * 299.99663 * 1 2 3 27 27 H 1.08002 * 119.66221 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.55865 * 179.97438 * 6 5 4 29 29 H 1.09000 * 109.46822 * 30.05031 * 8 7 6 30 30 H 1.09001 * 109.46842 * 150.04711 * 8 7 6 31 31 H 1.09000 * 109.46908 * 275.65586 * 10 9 8 32 32 H 1.08995 * 109.47242 * 35.66211 * 10 9 8 33 33 H 0.96998 * 120.00720 * 179.97438 * 14 13 11 34 34 H 1.08993 * 109.47357 * 317.31325 * 19 9 8 35 35 H 1.09005 * 109.46833 * 77.31784 * 19 9 8 36 36 H 1.08996 * 109.47062 * 300.98588 * 20 19 9 37 37 H 1.08996 * 109.47494 * 59.99915 * 21 20 19 38 38 H 1.09003 * 109.47114 * 180.02562 * 21 20 19 39 39 H 1.09005 * 109.47085 * 299.99660 * 21 20 19 40 40 H 1.09001 * 109.47095 * 59.99377 * 22 20 19 41 41 H 1.08993 * 109.47445 * 180.02562 * 22 20 19 42 42 H 1.09006 * 109.46918 * 300.00286 * 22 20 19 43 43 H 1.08008 * 120.81489 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2999 2.3809 0.0005 5 7 1.8940 3.5575 0.0010 6 6 3.2078 3.6722 0.0016 7 6 4.0178 2.5523 0.0021 8 6 5.5179 2.6965 0.0021 9 7 6.0054 2.7439 -1.3828 10 6 7.4703 2.6454 -1.4289 11 6 7.8956 2.1066 -2.7706 12 1 7.1556 1.9073 -3.5316 13 6 9.2293 1.8682 -3.0264 14 7 10.1303 2.1114 -2.0999 15 14 9.7563 1.1997 -4.6891 16 1 8.5602 1.0123 -5.5491 17 1 10.6863 2.1595 -5.3364 18 1 10.4413 -0.1048 -4.5037 19 6 5.5375 3.9583 -2.0642 20 6 5.6816 3.7816 -3.5772 21 6 4.8238 2.6010 -4.0367 22 6 5.2174 5.0557 -4.2859 23 6 3.4344 1.2954 0.0016 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2212 2.3268 0.0005 28 1 3.6568 4.6544 0.0016 29 1 5.7944 3.6169 0.5164 30 1 5.9647 1.8451 0.5157 31 1 7.9057 3.6335 -1.2796 32 1 7.8143 1.9741 -0.6422 33 1 11.0685 1.9433 -2.2797 34 1 4.4905 4.1332 -1.8169 35 1 6.1349 4.8102 -1.7394 36 1 6.7259 3.5893 -3.8227 37 1 3.7794 2.7933 -3.7912 38 1 4.9268 2.4749 -5.1145 39 1 5.1546 1.6933 -3.5318 40 1 5.8284 5.8968 -3.9584 41 1 5.3195 4.9297 -5.3637 42 1 4.1729 5.2481 -4.0403 43 1 4.0428 0.4030 0.0016 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808728685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:57 Heat of formation + Delta-G solvation = -3.970479 kcal Electronic energy + Delta-G solvation = -22328.301384 eV Core-core repulsion = 19180.918053 eV Total energy + Delta-G solvation = -3147.383331 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.60631 -38.42314 -37.25523 -34.10021 -32.89226 -31.90112 -30.51397 -27.78265 -27.25338 -26.43036 -26.16592 -24.05506 -23.23684 -21.66531 -20.61416 -19.03117 -17.79196 -16.94534 -16.57314 -16.35329 -15.94118 -15.21873 -14.64040 -14.28639 -14.16916 -13.95130 -13.49767 -13.25210 -12.93099 -12.82905 -12.54972 -12.22281 -12.00630 -11.83503 -11.71364 -11.59399 -11.48522 -11.26231 -11.04916 -10.70294 -10.51653 -10.19096 -10.13177 -9.95228 -9.53537 -9.30561 -9.18454 -9.06574 -8.41787 -8.31729 -7.27765 -6.01310 -3.99983 1.22262 1.43265 3.11914 3.31341 3.39655 3.44064 3.87248 4.43829 4.52718 4.68952 4.89530 4.95615 4.96675 5.06539 5.22690 5.26661 5.33441 5.35164 5.50628 5.65207 5.72555 5.92327 5.97338 6.03294 6.11632 6.15087 6.28145 6.30193 6.46250 6.49394 6.55370 6.60090 6.71017 6.81875 7.16925 7.20996 7.22239 7.29126 7.41806 7.86822 8.03490 8.10223 8.19727 8.52899 9.07383 9.62357 11.09196 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019516 B = 0.004755 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.340165 B = 5887.590821 C = 6168.651969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.313 6.313 3 C 0.074 3.926 4 C 0.004 3.996 5 N -0.453 5.453 6 C 0.064 3.936 7 C -0.068 4.068 8 C 0.092 3.908 9 N -0.527 5.527 10 C 0.192 3.808 11 C -0.502 4.502 12 H 0.079 0.921 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.891 3.109 16 H -0.271 1.271 17 H -0.286 1.286 18 H -0.285 1.285 19 C 0.069 3.931 20 C -0.105 4.105 21 C -0.128 4.128 22 C -0.144 4.144 23 C -0.088 4.088 24 H 0.056 0.944 25 H 0.100 0.900 26 H 0.055 0.945 27 H 0.152 0.848 28 H 0.153 0.847 29 H 0.038 0.962 30 H 0.083 0.917 31 H -0.006 1.006 32 H 0.028 0.972 33 H 0.259 0.741 34 H 0.054 0.946 35 H 0.023 0.977 36 H 0.112 0.888 37 H 0.030 0.970 38 H 0.034 0.966 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.048 0.952 42 H 0.041 0.959 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.258 0.174 3.697 16.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.027 3.973 4 C -0.154 4.154 5 N -0.162 5.162 6 C -0.094 4.094 7 C -0.071 4.071 8 C -0.037 4.037 9 N -0.251 5.251 10 C 0.067 3.933 11 C -0.540 4.540 12 H 0.097 0.903 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.719 3.281 16 H -0.195 1.195 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.059 4.059 20 C -0.124 4.124 21 C -0.185 4.185 22 C -0.202 4.202 23 C -0.115 4.115 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.073 0.927 27 H 0.169 0.831 28 H 0.170 0.830 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.012 0.988 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.041 0.959 36 H 0.130 0.870 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.689 0.296 3.483 17.051 hybrid contribution 0.995 -0.297 -0.452 1.133 sum -15.693 -0.001 3.032 15.983 Atomic orbital electron populations 1.23063 0.78470 1.04027 1.01359 1.86088 1.21250 1.26362 1.88781 1.20067 0.93208 0.85466 0.98599 1.22743 1.00089 0.87429 1.05130 1.67485 1.12136 1.26414 1.10146 1.22540 0.88564 0.98690 0.99615 1.20839 0.97793 0.92545 0.95905 1.21018 0.88528 1.01275 0.92842 1.62170 1.15125 1.37112 1.10673 1.19836 0.79281 0.95875 0.98289 1.21449 0.91992 1.41579 0.98990 0.90342 1.24993 0.96802 0.95989 0.96913 1.69960 1.01333 1.49337 1.33331 0.86546 0.78695 0.78589 0.84291 1.19526 1.21219 1.21146 1.22103 0.98194 0.90681 0.94967 1.21420 1.03609 0.93594 0.93759 1.21630 0.97666 1.00079 0.99106 1.21836 0.99996 0.98359 0.99970 1.20834 0.91130 0.98877 1.00675 0.92556 0.88163 0.92657 0.83124 0.82992 0.94405 0.89833 0.98811 0.95353 0.93098 0.92723 0.95892 0.87046 0.95060 0.94669 0.90751 0.93398 0.93315 0.93966 0.83854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.82 101.05 0.99 1.20 16 2 O -0.31 -3.92 10.51 -19.48 -0.20 -4.13 16 3 C 0.07 1.03 6.71 -39.07 -0.26 0.76 16 4 C 0.00 0.05 10.22 -17.37 -0.18 -0.12 16 5 N -0.45 -6.80 10.36 -13.12 -0.14 -6.93 16 6 C 0.06 0.96 9.03 -17.54 -0.16 0.80 16 7 C -0.07 -1.06 4.95 -104.51 -0.52 -1.57 16 8 C 0.09 1.56 5.10 -4.97 -0.03 1.54 16 9 N -0.53 -10.57 3.70 -237.51 -0.88 -11.45 16 10 C 0.19 4.69 4.79 -4.98 -0.02 4.67 16 11 C -0.50 -13.21 7.23 -34.44 -0.25 -13.46 16 12 H 0.08 2.03 4.57 -52.49 -0.24 1.79 16 13 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 14 N -0.90 -25.99 13.29 55.43 0.74 -25.25 16 15 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 16 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 C 0.07 1.28 4.25 -3.82 -0.02 1.27 16 20 C -0.11 -1.99 2.40 -90.62 -0.22 -2.21 16 21 C -0.13 -2.35 8.40 37.15 0.31 -2.04 16 22 C -0.14 -2.29 9.19 37.16 0.34 -1.95 16 23 C -0.09 -1.34 9.81 -39.14 -0.38 -1.72 16 24 H 0.06 0.40 7.68 -51.93 -0.40 0.00 16 25 H 0.10 0.58 8.14 -51.92 -0.42 0.15 16 26 H 0.05 0.36 7.68 -51.93 -0.40 -0.03 16 27 H 0.15 1.56 6.32 -52.49 -0.33 1.22 16 28 H 0.15 2.07 7.68 -52.49 -0.40 1.67 16 29 H 0.04 0.61 8.07 -51.93 -0.42 0.19 16 30 H 0.08 1.41 7.75 -51.93 -0.40 1.01 16 31 H -0.01 -0.16 7.67 -51.93 -0.40 -0.55 16 32 H 0.03 0.74 7.65 -51.93 -0.40 0.35 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.05 0.94 5.07 -51.93 -0.26 0.68 16 35 H 0.02 0.44 7.74 -51.93 -0.40 0.04 16 36 H 0.11 2.47 5.14 -51.93 -0.27 2.21 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 1.53 6.73 -51.93 -0.35 1.18 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.14 2.12 8.06 -52.48 -0.42 1.70 16 LS Contribution 341.04 15.07 5.14 5.14 Total: -1.00 -29.49 341.04 -7.61 -37.11 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.77 Total: 0.79 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -0.48 Total: -11.46 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: -0.28 Total: -43.63 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.20 Total: -4.13 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.49 -7.61 -37.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808728685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.137 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds