Wall clock time and date at job start Tue Mar 31 2020 00:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35918 * 117.00170 * 2 1 4 4 C 1.38752 * 120.46893 * 0.02562 * 3 2 1 5 5 N 1.31810 * 120.68079 * 179.97438 * 4 3 2 6 6 C 1.31877 * 121.78018 * 359.97438 * 5 4 3 7 7 C 1.38212 * 120.88695 * 359.97438 * 6 5 4 8 8 C 1.50704 * 120.38784 * 179.97438 * 7 6 5 9 9 N 1.46898 * 109.47707 * 270.05044 * 8 7 6 10 10 C 1.46894 * 111.00253 * 190.00068 * 9 8 7 11 11 C 1.50709 * 109.47118 * 155.66084 * 10 9 8 12 12 H 1.07998 * 119.99554 * 2.98454 * 11 10 9 13 13 C 1.37875 * 119.99632 * 182.98427 * 11 10 9 14 14 N 1.31507 * 120.00548 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99731 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47111 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47335 * 119.99742 * 15 13 11 18 18 H 1.48498 * 109.47208 * 240.00129 * 15 13 11 19 19 C 1.46903 * 110.99821 * 66.03939 * 9 8 7 20 20 C 1.53004 * 109.46898 * 197.31245 * 19 9 8 21 21 C 1.52994 * 109.47007 * 60.98937 * 20 19 9 22 22 C 1.53001 * 109.47102 * 180.99010 * 20 19 9 23 23 C 1.38569 * 119.22514 * 0.02807 * 7 6 5 24 24 H 1.08999 * 109.47305 * 60.00150 * 1 2 3 25 25 H 1.09008 * 109.46918 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47307 * 299.99663 * 1 2 3 27 27 H 1.08002 * 119.66221 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.55865 * 179.97438 * 6 5 4 29 29 H 1.09000 * 109.46822 * 30.05031 * 8 7 6 30 30 H 1.09001 * 109.46842 * 150.04711 * 8 7 6 31 31 H 1.09000 * 109.46908 * 275.65586 * 10 9 8 32 32 H 1.08995 * 109.47242 * 35.66211 * 10 9 8 33 33 H 0.96998 * 120.00720 * 179.97438 * 14 13 11 34 34 H 1.08993 * 109.47357 * 317.31325 * 19 9 8 35 35 H 1.09005 * 109.46833 * 77.31784 * 19 9 8 36 36 H 1.08996 * 109.47062 * 300.98588 * 20 19 9 37 37 H 1.08996 * 109.47494 * 59.99915 * 21 20 19 38 38 H 1.09003 * 109.47114 * 180.02562 * 21 20 19 39 39 H 1.09005 * 109.47085 * 299.99660 * 21 20 19 40 40 H 1.09001 * 109.47095 * 59.99377 * 22 20 19 41 41 H 1.08993 * 109.47445 * 180.02562 * 22 20 19 42 42 H 1.09006 * 109.46918 * 300.00286 * 22 20 19 43 43 H 1.08008 * 120.81489 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2999 2.3809 0.0005 5 7 1.8940 3.5575 0.0010 6 6 3.2078 3.6722 0.0016 7 6 4.0178 2.5523 0.0021 8 6 5.5179 2.6965 0.0021 9 7 6.0054 2.7439 -1.3828 10 6 7.4703 2.6454 -1.4289 11 6 7.8956 2.1066 -2.7706 12 1 7.1556 1.9073 -3.5316 13 6 9.2293 1.8682 -3.0264 14 7 10.1303 2.1114 -2.0999 15 14 9.7563 1.1997 -4.6891 16 1 8.5602 1.0123 -5.5491 17 1 10.6863 2.1595 -5.3364 18 1 10.4413 -0.1048 -4.5037 19 6 5.5375 3.9583 -2.0642 20 6 5.6816 3.7816 -3.5772 21 6 4.8238 2.6010 -4.0367 22 6 5.2174 5.0557 -4.2859 23 6 3.4344 1.2954 0.0016 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2212 2.3268 0.0005 28 1 3.6568 4.6544 0.0016 29 1 5.7944 3.6169 0.5164 30 1 5.9647 1.8451 0.5157 31 1 7.9057 3.6335 -1.2796 32 1 7.8143 1.9741 -0.6422 33 1 11.0685 1.9433 -2.2797 34 1 4.4905 4.1332 -1.8169 35 1 6.1349 4.8102 -1.7394 36 1 6.7259 3.5893 -3.8227 37 1 3.7794 2.7933 -3.7912 38 1 4.9268 2.4749 -5.1145 39 1 5.1546 1.6933 -3.5318 40 1 5.8284 5.8968 -3.9584 41 1 5.3195 4.9297 -5.3637 42 1 4.1729 5.2481 -4.0403 43 1 4.0428 0.4030 0.0016 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808728685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:56 Heat of formation + Delta-G solvation = -21.956077 kcal Electronic energy + Delta-G solvation = -22329.081298 eV Core-core repulsion = 19180.918053 eV Total energy + Delta-G solvation = -3148.163245 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.68836 -39.60169 -38.62305 -35.50744 -34.81584 -33.29251 -31.69890 -29.22057 -28.49025 -27.82737 -27.47104 -25.64601 -24.44774 -23.17875 -22.01879 -20.58456 -18.88686 -18.29135 -18.00000 -17.63543 -16.96074 -16.70200 -16.41457 -15.69532 -15.59724 -15.13092 -14.88034 -14.37844 -14.27125 -14.10624 -14.02480 -13.93626 -13.28485 -13.16075 -13.05670 -12.88075 -12.74630 -12.68430 -12.51114 -12.39230 -12.26722 -11.85977 -11.65338 -11.47114 -11.26955 -10.90350 -10.52290 -10.44736 -10.41774 -9.40840 -8.94772 -8.11156 -6.15702 0.10049 0.29659 1.41828 1.44177 1.55859 2.25147 2.44628 2.73364 3.20428 3.42696 3.53892 3.68509 3.81555 4.03164 4.11976 4.15474 4.26576 4.32355 4.42045 4.45664 4.53428 4.67641 4.70042 4.76264 4.77913 4.83394 4.91892 4.98104 5.03898 5.12622 5.17832 5.23928 5.29891 5.35442 5.43680 5.50650 5.65237 5.80036 5.87755 6.16785 6.27401 6.45589 6.65731 6.92878 6.99059 7.50546 8.99437 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019516 B = 0.004755 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.340165 B = 5887.590821 C = 6168.651969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.328 6.328 3 C 0.078 3.922 4 C 0.010 3.990 5 N -0.463 5.463 6 C 0.059 3.941 7 C -0.075 4.075 8 C 0.094 3.906 9 N -0.529 5.529 10 C 0.208 3.792 11 C -0.502 4.502 12 H 0.083 0.917 13 C 0.001 3.999 14 N -0.938 5.938 15 Si 0.953 3.047 16 H -0.262 1.262 17 H -0.283 1.283 18 H -0.284 1.284 19 C 0.072 3.928 20 C -0.108 4.108 21 C -0.118 4.118 22 C -0.137 4.137 23 C -0.104 4.104 24 H 0.067 0.933 25 H 0.121 0.879 26 H 0.071 0.929 27 H 0.184 0.816 28 H 0.162 0.838 29 H 0.045 0.955 30 H 0.077 0.923 31 H -0.033 1.033 32 H 0.003 0.997 33 H 0.260 0.740 34 H 0.075 0.925 35 H 0.014 0.986 36 H 0.075 0.925 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.937 0.203 2.794 19.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.241 6.241 3 C 0.030 3.970 4 C -0.148 4.148 5 N -0.172 5.172 6 C -0.099 4.099 7 C -0.077 4.077 8 C -0.034 4.034 9 N -0.253 5.253 10 C 0.082 3.918 11 C -0.540 4.540 12 H 0.101 0.899 13 C -0.196 4.196 14 N -0.580 5.580 15 Si 0.779 3.221 16 H -0.186 1.186 17 H -0.209 1.209 18 H -0.210 1.210 19 C -0.056 4.056 20 C -0.127 4.127 21 C -0.175 4.175 22 C -0.194 4.194 23 C -0.131 4.131 24 H 0.086 0.914 25 H 0.140 0.860 26 H 0.089 0.911 27 H 0.201 0.799 28 H 0.179 0.821 29 H 0.064 0.936 30 H 0.095 0.905 31 H -0.016 1.016 32 H 0.021 0.979 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.033 0.967 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -19.396 0.325 2.579 19.570 hybrid contribution 1.672 -0.360 -0.104 1.713 sum -17.725 -0.034 2.475 17.897 Atomic orbital electron populations 1.23441 0.75879 1.06027 1.02654 1.86083 1.23918 1.25684 1.88410 1.20060 0.92747 0.86390 0.97803 1.23247 1.01554 0.86604 1.03381 1.67555 1.11900 1.27197 1.10559 1.22638 0.88748 0.98781 0.99702 1.20575 0.96406 0.93193 0.97549 1.20981 0.89978 1.01394 0.91075 1.62071 1.12125 1.38214 1.12910 1.19479 0.82047 0.93503 0.96789 1.21773 0.92147 1.40436 0.99658 0.89935 1.25788 0.97040 0.96562 1.00259 1.70085 1.01586 1.50972 1.35337 0.85560 0.78410 0.77776 0.80322 1.18563 1.20927 1.21018 1.22124 0.98998 0.89572 0.94878 1.21359 1.01638 0.95522 0.94136 1.21509 0.98098 0.98570 0.99348 1.21754 1.00903 0.96592 1.00181 1.20905 0.92244 0.98575 1.01358 0.91432 0.86036 0.91056 0.79901 0.82064 0.93644 0.90500 1.01567 0.97852 0.93148 0.90647 0.96747 0.90691 0.93733 0.93714 0.93360 0.93181 0.92321 0.92260 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.82 113.37 1.11 1.29 16 2 O -0.33 -7.53 10.51 -92.62 -0.97 -8.51 16 3 C 0.08 2.01 6.71 22.60 0.15 2.17 16 4 C 0.01 0.25 10.22 84.82 0.87 1.11 16 5 N -0.46 -12.77 10.36 -195.43 -2.02 -14.80 16 6 C 0.06 1.67 9.03 84.68 0.76 2.44 16 7 C -0.07 -2.28 4.95 -19.79 -0.10 -2.38 16 8 C 0.09 3.26 5.10 85.56 0.44 3.69 16 9 N -0.53 -21.71 3.70 -905.36 -3.35 -25.05 16 10 C 0.21 10.59 4.79 85.56 0.41 11.00 16 11 C -0.50 -27.10 7.23 25.60 0.19 -26.92 16 12 H 0.08 4.33 4.57 -2.91 -0.01 4.32 16 13 C 0.00 0.03 5.46 84.66 0.46 0.49 16 14 N -0.94 -55.78 13.29 21.45 0.28 -55.50 16 15 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 16 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 19 C 0.07 2.67 4.25 86.30 0.37 3.04 16 20 C -0.11 -3.99 2.40 -10.79 -0.03 -4.02 16 21 C -0.12 -4.19 8.40 71.98 0.60 -3.59 16 22 C -0.14 -4.06 9.19 71.98 0.66 -3.40 16 23 C -0.10 -3.09 9.81 22.55 0.22 -2.87 16 24 H 0.07 0.71 7.68 -2.39 -0.02 0.69 16 25 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.07 0.68 7.68 -2.39 -0.02 0.66 16 27 H 0.18 3.03 6.32 -2.91 -0.02 3.01 16 28 H 0.16 4.15 7.68 -2.91 -0.02 4.13 16 29 H 0.05 1.49 8.07 -2.39 -0.02 1.47 16 30 H 0.08 2.72 7.75 -2.39 -0.02 2.70 16 31 H -0.03 -1.85 7.67 -2.39 -0.02 -1.87 16 32 H 0.00 0.19 7.65 -2.39 -0.02 0.17 16 33 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 34 H 0.08 2.49 5.07 -2.39 -0.01 2.48 16 35 H 0.01 0.56 7.74 -2.38 -0.02 0.54 16 36 H 0.07 3.36 5.14 -2.39 -0.01 3.34 16 37 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.05 1.96 6.73 -2.38 -0.02 1.94 16 40 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.06 1.56 8.14 -2.38 -0.02 1.55 16 43 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -64.12 341.04 3.07 -61.04 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.99 Total: 14.69 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: 6.12 Total: -17.94 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -5.09 Total: -95.35 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -0.97 Total: -8.51 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -64.12 3.07 -61.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808728685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.087 kcal (2) G-P(sol) polarization free energy of solvation -64.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds