Wall clock time and date at job start Tue Mar 31 2020 00:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46941 * 2 1 4 4 H 1.09002 * 109.46781 * 55.00524 * 3 2 1 5 5 N 1.46897 * 109.47414 * 295.00201 * 3 2 1 6 6 C 1.52997 * 109.46956 * 175.00012 * 3 2 1 7 7 N 1.46900 * 109.47286 * 175.00273 * 6 3 2 8 8 C 1.46892 * 111.00418 * 180.02562 * 7 6 3 9 9 H 1.09002 * 109.47056 * 324.99975 * 8 7 6 10 10 C 1.52998 * 109.47378 * 85.00090 * 8 7 6 11 11 C 1.50706 * 109.47073 * 205.00198 * 8 7 6 12 12 C 1.38292 * 119.92962 * 319.72403 * 11 8 7 13 13 C 1.38104 * 120.06722 * 179.72726 * 12 11 8 14 14 C 1.38876 * 119.92985 * 0.54805 * 13 12 11 15 15 O 1.35750 * 120.06842 * 179.75217 * 14 13 12 16 16 C 1.34830 * 117.00200 * 174.44129 * 15 14 13 17 17 H 1.08005 * 119.99709 * 5.05090 * 16 15 14 18 18 C 1.38649 * 120.00384 * 185.05218 * 16 15 14 19 19 N 1.31560 * 120.00265 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99925 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47141 * 90.00091 * 20 18 16 22 22 H 1.48498 * 109.47121 * 209.99954 * 20 18 16 23 23 H 1.48500 * 109.47270 * 330.00015 * 20 18 16 24 24 C 1.38880 * 119.86086 * 359.72391 * 14 13 12 25 25 C 1.38093 * 119.93066 * 0.02562 * 24 14 13 26 26 H 1.08999 * 109.47441 * 59.99548 * 1 2 3 27 27 H 1.08995 * 109.46913 * 299.99267 * 1 2 3 28 28 H 1.09003 * 109.46785 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47441 * 120.00452 * 2 1 3 30 30 H 1.09005 * 109.47001 * 240.00561 * 2 1 3 31 31 H 1.00890 * 111.00114 * 300.00084 * 5 3 2 32 32 H 1.00907 * 110.99804 * 63.95242 * 5 3 2 33 33 H 1.09000 * 109.47376 * 295.00542 * 6 3 2 34 34 H 1.09008 * 109.47034 * 55.00744 * 6 3 2 35 35 H 1.00907 * 110.99813 * 303.95906 * 7 6 3 36 36 H 1.09002 * 109.47080 * 299.99831 * 10 8 7 37 37 H 1.09002 * 109.47121 * 59.99925 * 10 8 7 38 38 H 1.09005 * 109.47182 * 180.02562 * 10 8 7 39 39 H 1.07999 * 119.96955 * 0.02562 * 12 11 8 40 40 H 1.08002 * 120.03302 * 180.27128 * 13 12 11 41 41 H 0.96996 * 119.99671 * 179.97438 * 19 18 16 42 42 H 1.08000 * 120.03078 * 179.97438 * 24 14 13 43 43 H 1.07999 * 119.96271 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 7 1.6513 2.0994 -1.2552 6 6 3.5647 1.4444 0.1257 7 7 4.0643 2.8206 0.0057 8 6 5.5281 2.8613 0.1212 9 1 5.8577 2.1038 0.8324 10 6 6.1556 2.5841 -1.2464 11 6 5.9563 4.2233 0.6036 12 6 5.3289 5.3560 0.1180 13 6 5.7151 6.6053 0.5624 14 6 6.7425 6.7239 1.4892 15 8 7.1279 7.9508 1.9241 16 6 8.0498 7.9901 2.9072 17 1 8.5068 7.0757 3.2557 18 6 8.4111 9.2043 3.4707 19 7 9.3103 9.2425 4.4303 20 14 7.6211 10.7859 2.8674 21 1 6.3982 11.0632 3.6630 22 1 8.5794 11.9093 3.0250 23 1 7.2576 10.6426 1.4348 24 6 7.3744 5.5848 1.9707 25 6 6.9801 4.3382 1.5264 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 2.0420 1.6181 -2.0511 32 1 0.6475 2.1684 -1.3314 33 1 3.8498 1.0377 1.0960 34 1 3.9953 0.8312 -0.6661 35 1 3.7582 3.2423 -0.8584 36 1 5.8459 1.5989 -1.5953 37 1 5.8261 3.3416 -1.9576 38 1 7.2419 2.6139 -1.1605 39 1 4.5327 5.2633 -0.6058 40 1 5.2218 7.4892 0.1860 41 1 9.5633 10.0920 4.8242 42 1 8.1740 5.6739 2.6912 43 1 7.4708 3.4520 1.9007 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817979944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:22 Heat of formation + Delta-G solvation = -14.151733 kcal Electronic energy + Delta-G solvation = -21117.927481 eV Core-core repulsion = 17970.102657 eV Total energy + Delta-G solvation = -3147.824823 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.27193 -38.21275 -36.98691 -35.04035 -32.32479 -31.38939 -30.46273 -30.09807 -28.05731 -26.93408 -25.25282 -23.29794 -22.31132 -21.73417 -20.74358 -19.84935 -17.73587 -17.23998 -16.72179 -15.60431 -15.32022 -14.93392 -14.67201 -14.42648 -14.15631 -13.93005 -13.69365 -13.59208 -13.46284 -12.99590 -12.67672 -12.48589 -12.36313 -12.19127 -12.10818 -11.93560 -11.62490 -11.46636 -11.21136 -11.12329 -11.06065 -10.63938 -10.50650 -10.43219 -10.07036 -9.30014 -8.94047 -8.79300 -8.20809 -8.11303 -7.18274 -6.35049 -4.01225 2.25234 2.34448 3.26727 3.30598 3.45593 4.07589 4.29717 4.37215 4.57162 4.68022 4.72929 4.82200 4.95751 5.08907 5.13847 5.19916 5.23159 5.35584 5.39150 5.46786 5.50634 5.59560 5.63485 5.69607 5.80195 5.81164 5.87155 5.98306 6.04487 6.19636 6.25431 6.46035 6.68589 6.84847 6.90313 7.09138 7.17755 7.24412 7.39149 7.48758 7.65158 7.71821 7.88401 8.12126 9.00922 9.65173 10.72947 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031342 B = 0.003035 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.159909 B = 9224.092926 C = 9501.944562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.091 3.909 4 H 0.089 0.911 5 N -0.839 5.839 6 C 0.068 3.932 7 N -0.671 5.671 8 C 0.137 3.863 9 H 0.073 0.927 10 C -0.175 4.175 11 C -0.156 4.156 12 C -0.054 4.054 13 C -0.194 4.194 14 C 0.158 3.842 15 O -0.221 6.221 16 C -0.387 4.387 17 H 0.106 0.894 18 C 0.062 3.938 19 N -0.883 5.883 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.221 4.221 25 C -0.071 4.071 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.334 0.666 32 H 0.341 0.659 33 H 0.071 0.929 34 H 0.022 0.978 35 H 0.351 0.649 36 H 0.045 0.955 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.278 0.722 42 H 0.131 0.869 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.463 -17.404 -10.996 24.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.200 4.200 3 C -0.021 4.021 4 H 0.107 0.893 5 N -0.368 5.368 6 C -0.062 4.062 7 N -0.303 5.303 8 C 0.027 3.973 9 H 0.091 0.909 10 C -0.234 4.234 11 C -0.157 4.157 12 C -0.073 4.073 13 C -0.213 4.213 14 C 0.106 3.894 15 O -0.126 6.126 16 C -0.463 4.463 17 H 0.123 0.877 18 C -0.141 4.141 19 N -0.522 5.522 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.184 1.184 24 C -0.240 4.240 25 C -0.090 4.090 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.146 0.854 32 H 0.154 0.846 33 H 0.090 0.910 34 H 0.040 0.960 35 H 0.172 0.828 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.088 0.912 42 H 0.149 0.851 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.114 -16.234 -9.961 23.124 hybrid contribution -0.315 -0.723 -1.056 1.318 sum -13.428 -16.956 -11.017 24.274 Atomic orbital electron populations 1.21774 0.95675 1.01737 1.01887 1.22347 0.96394 0.98798 1.02446 1.21552 0.95315 0.91611 0.93577 0.89274 1.58813 1.16326 1.57912 1.03782 1.21963 0.93388 0.90571 1.00327 1.60479 1.09269 1.16890 1.43692 1.20223 0.86800 0.94996 0.95244 0.90899 1.22486 1.02064 1.00493 0.98321 1.19156 1.00382 0.93556 1.02587 1.20344 0.97601 0.91014 0.98307 1.20212 1.00358 0.97657 1.03058 1.19125 0.92314 0.85088 0.92875 1.83572 1.54609 1.24508 1.49944 1.20760 1.16440 0.97063 1.12034 0.87718 1.24458 0.96012 0.98625 0.94999 1.69652 1.30572 1.27598 1.24336 0.86182 0.78981 0.81164 0.80568 1.19929 1.20897 1.18379 1.21212 1.04831 0.91964 1.05960 1.20592 0.96058 0.96394 0.95951 0.92954 0.92326 0.92709 0.91352 0.92269 0.85405 0.84551 0.91020 0.96029 0.82824 0.93557 0.92366 0.92005 0.87022 0.86762 0.91170 0.85141 0.87619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.68 37.16 0.36 -0.54 16 2 C -0.16 -1.05 5.58 -26.73 -0.15 -1.20 16 3 C 0.09 0.75 3.11 -67.71 -0.21 0.54 16 4 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 5 N -0.84 -6.28 8.25 -4.67 -0.04 -6.32 16 6 C 0.07 0.66 5.20 -3.83 -0.02 0.64 16 7 N -0.67 -8.15 5.70 -107.95 -0.62 -8.76 16 8 C 0.14 1.81 2.78 -68.87 -0.19 1.62 16 9 H 0.07 0.95 7.66 -51.93 -0.40 0.55 16 10 C -0.17 -2.02 9.14 37.16 0.34 -1.68 16 11 C -0.16 -2.63 4.96 -104.58 -0.52 -3.15 16 12 C -0.05 -0.96 9.31 -39.61 -0.37 -1.33 16 13 C -0.19 -3.99 9.99 -39.39 -0.39 -4.38 16 14 C 0.16 3.75 6.65 -39.11 -0.26 3.49 16 15 O -0.22 -5.99 8.59 0.05 0.00 -5.99 16 16 C -0.39 -11.16 9.95 30.88 0.31 -10.86 16 17 H 0.11 3.08 5.44 -52.48 -0.29 2.79 16 18 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 19 N -0.88 -25.99 13.96 55.48 0.77 -25.21 16 20 Si 0.91 22.16 28.62 -169.99 -4.86 17.30 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.22 -4.89 9.17 -39.40 -0.36 -5.25 16 25 C -0.07 -1.32 9.66 -39.61 -0.38 -1.71 16 26 H 0.05 0.27 6.87 -51.93 -0.36 -0.08 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.33 2.16 9.00 -39.30 -0.35 1.81 16 32 H 0.34 2.18 7.55 -39.29 -0.30 1.89 16 33 H 0.07 0.72 8.06 -51.93 -0.42 0.30 16 34 H 0.02 0.20 7.44 -51.92 -0.39 -0.19 16 35 H 0.35 4.20 6.96 -39.29 -0.27 3.93 16 36 H 0.05 0.46 7.45 -51.93 -0.39 0.07 16 37 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.11 1.72 7.25 -52.49 -0.38 1.34 16 40 H 0.11 2.21 8.06 -52.49 -0.42 1.79 16 41 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.13 3.04 5.64 -52.49 -0.30 2.74 16 43 H 0.11 1.70 8.03 -52.49 -0.42 1.27 16 LS Contribution 347.79 15.07 5.24 5.24 Total: -1.00 -29.80 347.79 -8.22 -38.02 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -6.77 Total: 7.85 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -1.95 Total: -22.12 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.12 Total: -40.29 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: 0.00 Total: -5.99 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.86 Total: 17.30 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.80 -8.22 -38.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817979944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.864 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds