Wall clock time and date at job start Tue Mar 31 2020 00:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46941 * 2 1 4 4 H 1.09002 * 109.46781 * 55.00524 * 3 2 1 5 5 N 1.46897 * 109.47414 * 295.00201 * 3 2 1 6 6 C 1.52997 * 109.46956 * 175.00012 * 3 2 1 7 7 N 1.46900 * 109.47286 * 175.00273 * 6 3 2 8 8 C 1.46892 * 111.00418 * 180.02562 * 7 6 3 9 9 H 1.09002 * 109.47056 * 324.99975 * 8 7 6 10 10 C 1.52998 * 109.47378 * 85.00090 * 8 7 6 11 11 C 1.50706 * 109.47073 * 205.00198 * 8 7 6 12 12 C 1.38292 * 119.92962 * 319.72403 * 11 8 7 13 13 C 1.38104 * 120.06722 * 179.72726 * 12 11 8 14 14 C 1.38876 * 119.92985 * 0.54805 * 13 12 11 15 15 O 1.35750 * 120.06842 * 179.75217 * 14 13 12 16 16 C 1.34830 * 117.00200 * 174.44129 * 15 14 13 17 17 H 1.08005 * 119.99709 * 5.05090 * 16 15 14 18 18 C 1.38649 * 120.00384 * 185.05218 * 16 15 14 19 19 N 1.31560 * 120.00265 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99925 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47141 * 90.00091 * 20 18 16 22 22 H 1.48498 * 109.47121 * 209.99954 * 20 18 16 23 23 H 1.48500 * 109.47270 * 330.00015 * 20 18 16 24 24 C 1.38880 * 119.86086 * 359.72391 * 14 13 12 25 25 C 1.38093 * 119.93066 * 0.02562 * 24 14 13 26 26 H 1.08999 * 109.47441 * 59.99548 * 1 2 3 27 27 H 1.08995 * 109.46913 * 299.99267 * 1 2 3 28 28 H 1.09003 * 109.46785 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47441 * 120.00452 * 2 1 3 30 30 H 1.09005 * 109.47001 * 240.00561 * 2 1 3 31 31 H 1.00890 * 111.00114 * 300.00084 * 5 3 2 32 32 H 1.00907 * 110.99804 * 63.95242 * 5 3 2 33 33 H 1.09000 * 109.47376 * 295.00542 * 6 3 2 34 34 H 1.09008 * 109.47034 * 55.00744 * 6 3 2 35 35 H 1.00907 * 110.99813 * 303.95906 * 7 6 3 36 36 H 1.09002 * 109.47080 * 299.99831 * 10 8 7 37 37 H 1.09002 * 109.47121 * 59.99925 * 10 8 7 38 38 H 1.09005 * 109.47182 * 180.02562 * 10 8 7 39 39 H 1.07999 * 119.96955 * 0.02562 * 12 11 8 40 40 H 1.08002 * 120.03302 * 180.27128 * 13 12 11 41 41 H 0.96996 * 119.99671 * 179.97438 * 19 18 16 42 42 H 1.08000 * 120.03078 * 179.97438 * 24 14 13 43 43 H 1.07999 * 119.96271 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 7 1.6513 2.0994 -1.2552 6 6 3.5647 1.4444 0.1257 7 7 4.0643 2.8206 0.0057 8 6 5.5281 2.8613 0.1212 9 1 5.8577 2.1038 0.8324 10 6 6.1556 2.5841 -1.2464 11 6 5.9563 4.2233 0.6036 12 6 5.3289 5.3560 0.1180 13 6 5.7151 6.6053 0.5624 14 6 6.7425 6.7239 1.4892 15 8 7.1279 7.9508 1.9241 16 6 8.0498 7.9901 2.9072 17 1 8.5068 7.0757 3.2557 18 6 8.4111 9.2043 3.4707 19 7 9.3103 9.2425 4.4303 20 14 7.6211 10.7859 2.8674 21 1 6.3982 11.0632 3.6630 22 1 8.5794 11.9093 3.0250 23 1 7.2576 10.6426 1.4348 24 6 7.3744 5.5848 1.9707 25 6 6.9801 4.3382 1.5264 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 2.0420 1.6181 -2.0511 32 1 0.6475 2.1684 -1.3314 33 1 3.8498 1.0377 1.0960 34 1 3.9953 0.8312 -0.6661 35 1 3.7582 3.2423 -0.8584 36 1 5.8459 1.5989 -1.5953 37 1 5.8261 3.3416 -1.9576 38 1 7.2419 2.6139 -1.1605 39 1 4.5327 5.2633 -0.6058 40 1 5.2218 7.4892 0.1860 41 1 9.5633 10.0920 4.8242 42 1 8.1740 5.6739 2.6912 43 1 7.4708 3.4520 1.9007 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817979944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:21 Heat of formation + Delta-G solvation = -34.342243 kcal Electronic energy + Delta-G solvation = -21118.803007 eV Core-core repulsion = 17970.102657 eV Total energy + Delta-G solvation = -3148.700349 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.91860 -39.34521 -38.20961 -36.19101 -34.41179 -32.24181 -31.75739 -31.20741 -29.45547 -27.67191 -27.22448 -24.22701 -23.80205 -22.99170 -21.53059 -21.16641 -19.67535 -19.06858 -17.55298 -16.70090 -16.62132 -16.04376 -15.76473 -15.66535 -15.51368 -15.34717 -15.10712 -14.75656 -14.48400 -14.25574 -14.07872 -14.04430 -13.82635 -13.39299 -13.08771 -12.99528 -12.68303 -12.56032 -12.46183 -12.18151 -12.11290 -12.03751 -11.82970 -11.73494 -11.51670 -11.22204 -10.87047 -9.73841 -9.51195 -9.13837 -8.87814 -8.48253 -6.20245 0.63193 0.72187 1.31791 1.36515 1.53034 2.29721 2.78731 3.07210 3.19614 3.33349 3.78648 3.97954 4.07793 4.12397 4.17190 4.21180 4.23865 4.39929 4.42046 4.47194 4.64069 4.67482 4.74782 4.81954 4.90164 4.90730 4.97264 5.01687 5.05632 5.12695 5.28349 5.31072 5.32974 5.38703 5.46118 5.62583 5.79886 5.85600 5.95271 6.23809 6.31096 6.42299 6.68550 6.74767 6.86514 7.62775 8.63639 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031342 B = 0.003035 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.159909 B = 9224.092926 C = 9501.944562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.153 4.153 3 C 0.098 3.902 4 H 0.070 0.930 5 N -0.844 5.844 6 C 0.069 3.931 7 N -0.682 5.682 8 C 0.140 3.860 9 H 0.080 0.920 10 C -0.168 4.168 11 C -0.131 4.131 12 C -0.048 4.048 13 C -0.193 4.193 14 C 0.115 3.885 15 O -0.248 6.248 16 C -0.398 4.398 17 H 0.080 0.920 18 C 0.008 3.992 19 N -0.926 5.926 20 Si 0.972 3.028 21 H -0.266 1.266 22 H -0.267 1.267 23 H -0.263 1.263 24 C -0.236 4.236 25 C -0.074 4.074 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.342 0.658 32 H 0.347 0.653 33 H 0.067 0.933 34 H 0.035 0.965 35 H 0.354 0.646 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.144 0.856 40 H 0.125 0.875 41 H 0.284 0.716 42 H 0.106 0.894 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.580 -19.164 -13.262 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.193 4.193 3 C -0.014 4.014 4 H 0.088 0.912 5 N -0.375 5.375 6 C -0.061 4.061 7 N -0.315 5.315 8 C 0.030 3.970 9 H 0.099 0.901 10 C -0.227 4.227 11 C -0.132 4.132 12 C -0.066 4.066 13 C -0.212 4.212 14 C 0.066 3.934 15 O -0.156 6.156 16 C -0.474 4.474 17 H 0.097 0.903 18 C -0.190 4.190 19 N -0.567 5.567 20 Si 0.794 3.206 21 H -0.191 1.191 22 H -0.191 1.191 23 H -0.188 1.188 24 C -0.255 4.255 25 C -0.093 4.093 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.155 0.845 32 H 0.162 0.838 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.175 0.825 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.162 0.838 40 H 0.143 0.857 41 H 0.094 0.906 42 H 0.124 0.876 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.253 -18.040 -12.251 26.612 hybrid contribution 0.212 -0.509 -0.479 0.730 sum -15.042 -18.549 -12.730 27.062 Atomic orbital electron populations 1.21767 0.95193 1.02106 1.01945 1.22267 0.96759 0.97604 1.02678 1.21391 0.94243 0.92430 0.93346 0.91201 1.58775 1.16986 1.58040 1.03735 1.21998 0.94268 0.89232 1.00598 1.60390 1.08258 1.18746 1.44059 1.20191 0.87963 0.92375 0.96479 0.90147 1.22405 1.01578 1.01864 0.96885 1.19713 0.97989 0.95692 0.99838 1.20717 0.97833 0.89903 0.98163 1.20516 0.99242 0.99504 1.01970 1.19649 0.94296 0.84668 0.94745 1.83511 1.55303 1.26262 1.50503 1.20708 1.17139 0.96626 1.12941 0.90294 1.25287 0.96653 1.01834 0.95226 1.69735 1.32293 1.28738 1.25910 0.85205 0.78468 0.77345 0.79600 1.19132 1.19118 1.18762 1.21224 1.04702 0.93412 1.06185 1.20890 0.96567 0.95754 0.96060 0.92239 0.92966 0.92197 0.91603 0.91512 0.84536 0.83849 0.91436 0.94645 0.82511 0.91305 0.92281 0.92487 0.83788 0.85724 0.90631 0.87621 0.84942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.68 71.98 0.70 -0.75 16 2 C -0.15 -1.60 5.58 30.59 0.17 -1.43 16 3 C 0.10 1.35 3.11 44.92 0.14 1.49 16 4 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 5 N -0.84 -10.11 8.25 -168.68 -1.39 -11.50 16 6 C 0.07 1.10 5.20 86.30 0.45 1.55 16 7 N -0.68 -14.12 5.70 -495.45 -2.82 -16.95 16 8 C 0.14 3.19 2.78 44.17 0.12 3.31 16 9 H 0.08 1.78 7.66 -2.39 -0.02 1.76 16 10 C -0.17 -3.20 9.14 71.98 0.66 -2.55 16 11 C -0.13 -4.09 4.96 -19.83 -0.10 -4.19 16 12 C -0.05 -1.57 9.31 22.25 0.21 -1.36 16 13 C -0.19 -7.80 9.99 22.39 0.22 -7.58 16 14 C 0.11 5.63 6.65 22.58 0.15 5.78 16 15 O -0.25 -13.99 8.59 -22.74 -0.20 -14.19 16 16 C -0.40 -24.21 9.95 67.92 0.68 -23.54 16 17 H 0.08 5.04 5.44 -2.91 -0.02 5.02 16 18 C 0.01 0.47 5.49 84.83 0.47 0.93 16 19 N -0.93 -56.60 13.96 21.61 0.30 -56.30 16 20 Si 0.97 46.75 28.62 68.60 1.96 48.71 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 24 C -0.24 -10.83 9.17 22.39 0.21 -10.62 16 25 C -0.07 -2.68 9.66 22.25 0.21 -2.47 16 26 H 0.06 0.47 6.87 -2.39 -0.02 0.46 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.34 3.24 9.00 -89.70 -0.81 2.43 16 32 H 0.35 3.51 7.55 -89.69 -0.68 2.83 16 33 H 0.07 1.16 8.06 -2.39 -0.02 1.14 16 34 H 0.04 0.49 7.44 -2.38 -0.02 0.47 16 35 H 0.35 7.03 6.96 -89.69 -0.62 6.41 16 36 H 0.07 1.04 7.45 -2.39 -0.02 1.02 16 37 H 0.06 1.13 8.13 -2.39 -0.02 1.11 16 38 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.14 3.83 7.25 -2.91 -0.02 3.81 16 40 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 41 H 0.28 15.91 8.31 -92.71 -0.77 15.14 16 42 H 0.11 5.32 5.64 -2.91 -0.02 5.30 16 43 H 0.13 4.02 8.03 -2.91 -0.02 4.00 16 Total: -1.00 -67.19 347.79 1.05 -66.14 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: -1.08 Total: 25.51 kcal Atomic # 6 Polarization: -45.71 SS G_CDS: 4.28 Total: -41.43 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -3.91 Total: -84.75 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.20 Total: -14.19 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.96 Total: 48.71 kcal Total: -67.19 1.05 -66.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817979944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.798 kcal (2) G-P(sol) polarization free energy of solvation -67.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds