Wall clock time and date at job start Tue Mar 31 2020 00:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47360 * 2 1 4 4 H 1.08994 * 109.47446 * 305.00540 * 3 2 1 5 5 N 1.46905 * 109.47014 * 65.00163 * 3 2 1 6 6 C 1.53000 * 109.47328 * 184.99918 * 3 2 1 7 7 N 1.46901 * 109.47232 * 185.00236 * 6 3 2 8 8 C 1.46897 * 111.00404 * 180.02562 * 7 6 3 9 9 H 1.09002 * 109.46507 * 34.99561 * 8 7 6 10 10 C 1.53004 * 109.46925 * 275.00271 * 8 7 6 11 11 C 1.50690 * 109.47576 * 154.99896 * 8 7 6 12 12 C 1.38296 * 119.93124 * 39.72560 * 11 8 7 13 13 C 1.38103 * 120.07222 * 179.72709 * 12 11 8 14 14 C 1.38883 * 119.92485 * 0.54549 * 13 12 11 15 15 O 1.35754 * 120.06521 * 179.74877 * 14 13 12 16 16 C 1.34831 * 116.99680 * 174.44545 * 15 14 13 17 17 H 1.08003 * 120.00188 * 5.05658 * 16 15 14 18 18 C 1.38650 * 119.99778 * 185.05524 * 16 15 14 19 19 N 1.31560 * 120.00150 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00073 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47005 * 89.99828 * 20 18 16 22 22 H 1.48495 * 109.47490 * 210.00008 * 20 18 16 23 23 H 1.48504 * 109.46854 * 330.00016 * 20 18 16 24 24 C 1.38879 * 119.86545 * 359.73183 * 14 13 12 25 25 C 1.38099 * 119.92617 * 359.97438 * 24 14 13 26 26 H 1.09001 * 109.47143 * 59.99191 * 1 2 3 27 27 H 1.09000 * 109.47164 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46943 * 299.99615 * 1 2 3 29 29 H 1.09000 * 109.47202 * 239.99905 * 2 1 3 30 30 H 1.09003 * 109.47423 * 120.00340 * 2 1 3 31 31 H 1.00903 * 111.00004 * 296.04796 * 5 3 2 32 32 H 1.00900 * 111.00132 * 59.99596 * 5 3 2 33 33 H 1.08994 * 109.46896 * 65.00511 * 6 3 2 34 34 H 1.09002 * 109.47243 * 304.99887 * 6 3 2 35 35 H 1.00908 * 111.00048 * 303.95509 * 7 6 3 36 36 H 1.08996 * 109.47460 * 59.99609 * 10 8 7 37 37 H 1.09001 * 109.47101 * 179.97438 * 10 8 7 38 38 H 1.08996 * 109.46838 * 299.99450 * 10 8 7 39 39 H 1.07999 * 119.96878 * 0.02562 * 12 11 8 40 40 H 1.07995 * 120.03919 * 180.27242 * 13 12 11 41 41 H 0.97003 * 120.00064 * 180.02562 * 19 18 16 42 42 H 1.08000 * 120.03797 * 179.97438 * 24 14 13 43 43 H 1.08001 * 119.96192 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 7 1.6515 2.0993 1.2553 6 6 3.5649 1.4443 -0.1257 7 7 4.0645 2.8205 -0.0055 8 6 5.5282 2.8613 -0.1222 9 1 5.8571 2.1041 -0.8340 10 6 6.1568 2.5835 1.2448 11 6 5.9560 4.2234 -0.6044 12 6 5.3213 5.3553 -0.1264 13 6 5.7148 6.6054 -0.5621 14 6 6.7415 6.7244 -1.4897 15 8 7.1271 7.9515 -1.9237 16 6 8.2032 8.0037 -2.7345 17 1 8.6668 7.0901 -3.0760 18 6 8.7145 9.2304 -3.1297 19 7 8.1500 10.3434 -2.7132 20 14 10.2058 9.3029 -4.2523 21 1 9.7592 9.3124 -5.6685 22 1 10.9793 10.5383 -3.9689 23 1 11.0643 8.1152 -4.0120 24 6 7.3731 5.5855 -1.9722 25 6 6.9790 4.3387 -1.5280 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.6477 2.1684 1.3316 32 1 2.0422 1.6179 2.0513 33 1 3.8499 1.0378 -1.0960 34 1 3.9955 0.8311 0.6660 35 1 3.6307 3.4236 -0.6884 36 1 5.8474 1.5983 1.5936 37 1 7.2429 2.6134 1.1581 38 1 5.8278 3.3407 1.9565 39 1 4.5203 5.2620 0.5919 40 1 5.2217 7.4892 -0.1851 41 1 8.5075 11.2016 -2.9900 42 1 8.1715 5.6748 -2.6939 43 1 7.4700 3.4527 -1.9024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000817979946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:26 Heat of formation + Delta-G solvation = -15.284695 kcal Electronic energy + Delta-G solvation = -21080.746810 eV Core-core repulsion = 17932.872858 eV Total energy + Delta-G solvation = -3147.873952 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.18816 -38.04341 -36.87624 -34.86734 -32.26548 -31.26946 -30.39595 -30.05588 -27.87377 -26.92827 -25.34891 -23.34099 -22.15178 -21.55367 -20.75803 -19.75791 -17.87650 -16.97189 -16.39516 -15.89236 -15.23097 -14.85334 -14.63889 -14.48262 -14.03758 -13.90547 -13.66222 -13.34258 -13.31906 -13.03681 -12.69104 -12.46007 -12.18645 -12.12614 -11.92955 -11.65030 -11.56431 -11.39434 -11.21210 -11.13884 -10.88944 -10.61577 -10.58331 -10.39079 -10.20808 -9.29237 -8.79710 -8.66106 -8.14974 -8.10035 -7.12235 -6.41989 -4.00798 2.28612 2.36870 3.14090 3.15115 3.19883 3.99050 4.12893 4.47273 4.61270 4.72418 4.74893 4.81138 5.10542 5.13915 5.24596 5.29498 5.37081 5.39639 5.50944 5.58290 5.61245 5.66443 5.75159 5.79218 5.82812 5.95711 5.95985 6.06992 6.10260 6.30049 6.46515 6.55558 6.80510 6.93349 7.05221 7.09952 7.21442 7.32994 7.40131 7.48621 7.54027 7.69268 7.89668 8.03327 9.03756 9.75072 10.76177 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036279 B = 0.002887 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.608936 B = 9697.584350 C = 9855.048238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.094 3.906 4 H 0.077 0.923 5 N -0.822 5.822 6 C 0.066 3.934 7 N -0.664 5.664 8 C 0.141 3.859 9 H 0.035 0.965 10 C -0.129 4.129 11 C -0.191 4.191 12 C -0.053 4.053 13 C -0.195 4.195 14 C 0.155 3.845 15 O -0.179 6.179 16 C -0.391 4.391 17 H 0.091 0.909 18 C 0.038 3.962 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.274 1.274 22 H -0.277 1.277 23 H -0.268 1.268 24 C -0.235 4.235 25 C -0.067 4.067 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.333 0.667 32 H 0.337 0.663 33 H 0.027 0.973 34 H 0.066 0.934 35 H 0.344 0.656 36 H 0.043 0.957 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.122 0.878 40 H 0.116 0.884 41 H 0.269 0.731 42 H 0.125 0.875 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.970 -18.897 5.048 21.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.201 4.201 3 C -0.019 4.019 4 H 0.095 0.905 5 N -0.351 5.351 6 C -0.064 4.064 7 N -0.295 5.295 8 C 0.032 3.968 9 H 0.053 0.947 10 C -0.187 4.187 11 C -0.192 4.192 12 C -0.072 4.072 13 C -0.214 4.214 14 C 0.101 3.899 15 O -0.082 6.082 16 C -0.468 4.468 17 H 0.108 0.892 18 C -0.166 4.166 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.255 4.255 25 C -0.086 4.086 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.163 0.837 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.079 0.921 42 H 0.143 0.857 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.604 -17.769 5.464 20.924 hybrid contribution 0.487 -1.149 -1.402 1.877 sum -9.117 -18.918 4.061 21.390 Atomic orbital electron populations 1.21773 0.95708 1.01694 1.01877 1.22366 0.96364 0.98936 1.02404 1.21486 0.95037 0.91488 0.93882 0.90499 1.58697 1.14995 1.58131 1.03299 1.21993 0.93689 0.91531 0.99182 1.60452 1.04597 1.07715 1.56747 1.20158 0.87324 0.93593 0.95758 0.94700 1.21743 0.99402 1.00677 0.96903 1.19279 1.02128 0.93891 1.03879 1.20541 0.98013 0.90780 0.97820 1.20272 1.01324 0.97664 1.02184 1.19432 0.92850 0.85984 0.91635 1.83983 1.43485 1.23087 1.57694 1.21312 1.05635 0.94245 1.25559 0.89156 1.25280 0.98955 0.94169 0.98156 1.70042 1.39748 0.97561 1.42497 0.85724 0.79935 0.78325 0.79505 1.19925 1.20264 1.19247 1.21104 1.05560 0.92116 1.06705 1.20582 0.95866 0.96242 0.95892 0.92497 0.92744 0.92811 0.91655 0.92044 0.85427 0.84990 0.95507 0.91572 0.83668 0.93833 0.92977 0.91916 0.85988 0.86612 0.92064 0.85727 0.87935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.68 37.16 0.36 -0.59 16 2 C -0.16 -1.11 5.58 -26.73 -0.15 -1.26 16 3 C 0.09 0.80 3.04 -67.71 -0.21 0.60 16 4 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 5 N -0.82 -7.18 8.91 -4.67 -0.04 -7.22 16 6 C 0.07 0.67 5.15 -3.82 -0.02 0.65 16 7 N -0.66 -8.30 5.41 -107.96 -0.58 -8.89 16 8 C 0.14 1.96 2.82 -68.87 -0.19 1.76 16 9 H 0.04 0.48 7.66 -51.93 -0.40 0.08 16 10 C -0.13 -1.69 9.39 37.16 0.35 -1.34 16 11 C -0.19 -3.27 4.72 -104.58 -0.49 -3.77 16 12 C -0.05 -0.97 8.99 -39.61 -0.36 -1.33 16 13 C -0.20 -4.22 9.99 -39.39 -0.39 -4.61 16 14 C 0.15 3.80 6.65 -39.11 -0.26 3.54 16 15 O -0.18 -5.19 9.76 0.03 0.00 -5.19 16 16 C -0.39 -11.08 9.49 30.88 0.29 -10.78 16 17 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.62 13.67 55.48 0.76 -24.86 16 20 Si 0.94 20.74 29.55 -169.99 -5.02 15.72 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 C -0.24 -5.20 9.17 -39.40 -0.36 -5.56 16 25 C -0.07 -1.25 9.66 -39.61 -0.38 -1.63 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.31 6.87 -51.93 -0.36 -0.05 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.33 2.47 7.55 -39.29 -0.30 2.18 16 32 H 0.34 2.77 9.00 -39.29 -0.35 2.42 16 33 H 0.03 0.27 8.05 -51.93 -0.42 -0.14 16 34 H 0.07 0.66 7.44 -51.93 -0.39 0.28 16 35 H 0.34 4.66 7.98 -39.29 -0.31 4.35 16 36 H 0.04 0.50 7.45 -51.93 -0.39 0.11 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.12 2.04 7.70 -52.49 -0.40 1.63 16 40 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 41 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.13 2.76 5.64 -52.49 -0.30 2.47 16 43 H 0.10 1.65 8.03 -52.49 -0.42 1.23 16 LS Contribution 350.38 15.07 5.28 5.28 Total: -1.00 -29.98 350.38 -8.34 -38.32 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -6.82 Total: 10.18 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: -1.91 Total: -23.35 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.13 Total: -40.97 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: 0.00 Total: -5.19 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.98 -8.34 -38.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817979946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.040 kcal (2) G-P(sol) polarization free energy of solvation -29.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds