Wall clock time and date at job start Tue Mar 31 2020 00:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47360 * 2 1 4 4 H 1.08994 * 109.47446 * 305.00540 * 3 2 1 5 5 N 1.46905 * 109.47014 * 65.00163 * 3 2 1 6 6 C 1.53000 * 109.47328 * 184.99918 * 3 2 1 7 7 N 1.46901 * 109.47232 * 185.00236 * 6 3 2 8 8 C 1.46897 * 111.00404 * 180.02562 * 7 6 3 9 9 H 1.09002 * 109.46507 * 34.99561 * 8 7 6 10 10 C 1.53004 * 109.46925 * 275.00271 * 8 7 6 11 11 C 1.50690 * 109.47576 * 154.99896 * 8 7 6 12 12 C 1.38296 * 119.93124 * 39.72560 * 11 8 7 13 13 C 1.38103 * 120.07222 * 179.72709 * 12 11 8 14 14 C 1.38883 * 119.92485 * 0.54549 * 13 12 11 15 15 O 1.35754 * 120.06521 * 179.74877 * 14 13 12 16 16 C 1.34831 * 116.99680 * 174.44545 * 15 14 13 17 17 H 1.08003 * 120.00188 * 5.05658 * 16 15 14 18 18 C 1.38650 * 119.99778 * 185.05524 * 16 15 14 19 19 N 1.31560 * 120.00150 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00073 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47005 * 89.99828 * 20 18 16 22 22 H 1.48495 * 109.47490 * 210.00008 * 20 18 16 23 23 H 1.48504 * 109.46854 * 330.00016 * 20 18 16 24 24 C 1.38879 * 119.86545 * 359.73183 * 14 13 12 25 25 C 1.38099 * 119.92617 * 359.97438 * 24 14 13 26 26 H 1.09001 * 109.47143 * 59.99191 * 1 2 3 27 27 H 1.09000 * 109.47164 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46943 * 299.99615 * 1 2 3 29 29 H 1.09000 * 109.47202 * 239.99905 * 2 1 3 30 30 H 1.09003 * 109.47423 * 120.00340 * 2 1 3 31 31 H 1.00903 * 111.00004 * 296.04796 * 5 3 2 32 32 H 1.00900 * 111.00132 * 59.99596 * 5 3 2 33 33 H 1.08994 * 109.46896 * 65.00511 * 6 3 2 34 34 H 1.09002 * 109.47243 * 304.99887 * 6 3 2 35 35 H 1.00908 * 111.00048 * 303.95509 * 7 6 3 36 36 H 1.08996 * 109.47460 * 59.99609 * 10 8 7 37 37 H 1.09001 * 109.47101 * 179.97438 * 10 8 7 38 38 H 1.08996 * 109.46838 * 299.99450 * 10 8 7 39 39 H 1.07999 * 119.96878 * 0.02562 * 12 11 8 40 40 H 1.07995 * 120.03919 * 180.27242 * 13 12 11 41 41 H 0.97003 * 120.00064 * 180.02562 * 19 18 16 42 42 H 1.08000 * 120.03797 * 179.97438 * 24 14 13 43 43 H 1.08001 * 119.96192 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 7 1.6515 2.0993 1.2553 6 6 3.5649 1.4443 -0.1257 7 7 4.0645 2.8205 -0.0055 8 6 5.5282 2.8613 -0.1222 9 1 5.8571 2.1041 -0.8340 10 6 6.1568 2.5835 1.2448 11 6 5.9560 4.2234 -0.6044 12 6 5.3213 5.3553 -0.1264 13 6 5.7148 6.6054 -0.5621 14 6 6.7415 6.7244 -1.4897 15 8 7.1271 7.9515 -1.9237 16 6 8.2032 8.0037 -2.7345 17 1 8.6668 7.0901 -3.0760 18 6 8.7145 9.2304 -3.1297 19 7 8.1500 10.3434 -2.7132 20 14 10.2058 9.3029 -4.2523 21 1 9.7592 9.3124 -5.6685 22 1 10.9793 10.5383 -3.9689 23 1 11.0643 8.1152 -4.0120 24 6 7.3731 5.5855 -1.9722 25 6 6.9790 4.3387 -1.5280 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.6477 2.1684 1.3316 32 1 2.0422 1.6179 2.0513 33 1 3.8499 1.0378 -1.0960 34 1 3.9955 0.8311 0.6660 35 1 3.6307 3.4236 -0.6884 36 1 5.8474 1.5983 1.5936 37 1 7.2429 2.6134 1.1581 38 1 5.8278 3.3407 1.9565 39 1 4.5203 5.2620 0.5919 40 1 5.2217 7.4892 -0.1851 41 1 8.5075 11.2016 -2.9900 42 1 8.1715 5.6748 -2.6939 43 1 7.4700 3.4527 -1.9024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000817979946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:25 Heat of formation + Delta-G solvation = -35.822344 kcal Electronic energy + Delta-G solvation = -21081.637389 eV Core-core repulsion = 17932.872858 eV Total energy + Delta-G solvation = -3148.764531 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.86225 -39.23819 -38.12965 -36.08667 -34.24820 -32.19716 -31.75279 -31.18425 -29.34774 -27.73955 -27.33468 -24.28832 -23.73902 -22.85379 -21.53356 -21.10584 -19.73467 -18.81027 -17.14712 -17.06425 -16.55277 -16.26456 -15.70158 -15.63555 -15.53421 -15.35089 -15.11911 -14.51304 -14.43539 -14.21576 -13.99389 -13.75179 -13.57518 -13.44397 -12.98691 -12.90444 -12.68269 -12.60801 -12.40368 -12.16695 -12.15119 -12.09105 -11.78459 -11.59516 -11.49434 -11.16129 -10.77744 -9.75205 -9.31337 -9.12888 -8.88865 -8.46355 -6.14563 0.62336 0.70988 1.34856 1.44376 1.52628 2.18198 2.82795 3.15348 3.27971 3.54364 3.80634 3.94461 4.00999 4.14358 4.15680 4.24046 4.26039 4.42152 4.53011 4.60246 4.63845 4.74447 4.77909 4.80961 4.86269 4.95724 5.02032 5.06496 5.11762 5.16002 5.18241 5.29803 5.32154 5.37338 5.48540 5.60810 5.72840 5.77283 6.04021 6.23482 6.30834 6.48966 6.62650 6.80663 6.98289 7.80079 8.77048 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036279 B = 0.002887 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.608936 B = 9697.584350 C = 9855.048238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.153 4.153 3 C 0.099 3.901 4 H 0.067 0.933 5 N -0.833 5.833 6 C 0.067 3.933 7 N -0.666 5.666 8 C 0.145 3.855 9 H 0.049 0.951 10 C -0.126 4.126 11 C -0.163 4.163 12 C -0.043 4.043 13 C -0.206 4.206 14 C 0.114 3.886 15 O -0.233 6.233 16 C -0.413 4.413 17 H 0.101 0.899 18 C -0.024 4.024 19 N -0.922 5.922 20 Si 1.019 2.981 21 H -0.263 1.263 22 H -0.271 1.271 23 H -0.253 1.253 24 C -0.243 4.243 25 C -0.065 4.065 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.340 0.660 32 H 0.341 0.659 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.338 0.662 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.144 0.856 40 H 0.110 0.890 41 H 0.272 0.728 42 H 0.118 0.882 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.044 -22.322 5.322 25.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.193 4.193 3 C -0.014 4.014 4 H 0.085 0.915 5 N -0.363 5.363 6 C -0.063 4.063 7 N -0.297 5.297 8 C 0.035 3.965 9 H 0.067 0.933 10 C -0.184 4.184 11 C -0.164 4.164 12 C -0.061 4.061 13 C -0.225 4.225 14 C 0.063 3.937 15 O -0.140 6.140 16 C -0.489 4.489 17 H 0.118 0.882 18 C -0.222 4.222 19 N -0.560 5.560 20 Si 0.838 3.162 21 H -0.188 1.188 22 H -0.196 1.196 23 H -0.177 1.177 24 C -0.262 4.262 25 C -0.083 4.083 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.153 0.847 32 H 0.154 0.846 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.157 0.843 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.162 0.838 40 H 0.128 0.872 41 H 0.081 0.919 42 H 0.136 0.864 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.710 -21.260 5.763 24.072 hybrid contribution 0.305 -0.377 -1.318 1.404 sum -9.404 -21.636 4.445 24.007 Atomic orbital electron populations 1.21766 0.95192 1.02101 1.01923 1.22279 0.96755 0.97670 1.02646 1.21385 0.94008 0.92433 0.93539 0.91493 1.58690 1.15716 1.58436 1.03475 1.22062 0.94602 0.90000 0.99606 1.60477 1.03495 1.09203 1.56549 1.20181 0.88469 0.91259 0.96580 0.93338 1.21703 0.99301 1.01579 0.95802 1.19768 0.99863 0.95497 1.01231 1.20759 0.98135 0.89724 0.97495 1.20486 1.00918 0.99105 1.02010 1.19946 0.94532 0.85808 0.93379 1.83947 1.44866 1.25456 1.59752 1.21816 1.06050 0.95130 1.25932 0.88164 1.26605 1.02351 0.93382 0.99826 1.70191 1.42291 0.98346 1.45170 0.84581 0.75517 0.78875 0.77188 1.18762 1.19580 1.17684 1.21207 1.05392 0.92829 1.06749 1.20937 0.95947 0.95935 0.95523 0.92887 0.92166 0.92375 0.91600 0.91563 0.84668 0.84583 0.95120 0.90904 0.84343 0.91704 0.92976 0.92996 0.83806 0.87209 0.91858 0.86432 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.68 71.98 0.70 -0.84 16 2 C -0.15 -1.72 5.58 30.59 0.17 -1.55 16 3 C 0.10 1.44 3.04 44.91 0.14 1.58 16 4 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 5 N -0.83 -12.53 8.91 -168.67 -1.50 -14.03 16 6 C 0.07 1.13 5.15 86.30 0.44 1.57 16 7 N -0.67 -14.50 5.41 -495.46 -2.68 -17.18 16 8 C 0.14 3.47 2.82 44.17 0.12 3.59 16 9 H 0.05 1.09 7.66 -2.39 -0.02 1.07 16 10 C -0.13 -2.82 9.39 71.98 0.68 -2.14 16 11 C -0.16 -5.15 4.72 -19.84 -0.09 -5.25 16 12 C -0.04 -1.51 8.99 22.25 0.20 -1.31 16 13 C -0.21 -9.10 9.99 22.39 0.22 -8.88 16 14 C 0.11 5.80 6.65 22.58 0.15 5.95 16 15 O -0.23 -14.37 9.76 -22.80 -0.22 -14.60 16 16 C -0.41 -24.49 9.49 67.92 0.64 -23.84 16 17 H 0.10 5.45 5.20 -2.91 -0.02 5.44 16 18 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 19 N -0.92 -57.47 13.67 21.61 0.30 -57.18 16 20 Si 1.02 43.42 29.55 68.60 2.03 45.44 16 21 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 22 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 23 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 24 C -0.24 -10.75 9.17 22.39 0.21 -10.55 16 25 C -0.06 -2.27 9.66 22.25 0.21 -2.05 16 26 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.53 6.87 -2.39 -0.02 0.52 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.34 4.32 7.55 -89.69 -0.68 3.64 16 32 H 0.34 4.68 9.00 -89.69 -0.81 3.88 16 33 H 0.03 0.51 8.05 -2.39 -0.02 0.50 16 34 H 0.07 1.17 7.44 -2.39 -0.02 1.15 16 35 H 0.34 8.20 7.98 -89.69 -0.72 7.49 16 36 H 0.06 1.21 7.45 -2.39 -0.02 1.19 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.14 4.47 7.70 -2.91 -0.02 4.45 16 40 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 41 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 42 H 0.12 5.30 5.64 -2.91 -0.02 5.28 16 43 H 0.14 3.87 8.03 -2.91 -0.02 3.85 16 Total: -1.00 -68.74 350.38 1.00 -67.74 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: -1.18 Total: 34.46 kcal Atomic # 6 Polarization: -48.92 SS G_CDS: 4.26 Total: -44.66 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -3.89 Total: -88.39 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.22 Total: -14.60 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -68.74 1.00 -67.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000817979946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.920 kcal (2) G-P(sol) polarization free energy of solvation -68.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds