Wall clock time and date at job start Tue Mar 31 2020 00:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53041 * 109.46104 * 98.83345 * 3 2 1 5 5 C 1.53189 * 109.31621 * 181.38498 * 4 3 2 6 6 N 1.46933 * 108.77196 * 305.36698 * 5 4 3 7 7 C 1.34779 * 120.62793 * 233.58162 * 6 5 4 8 8 O 1.21586 * 119.99900 * 5.22563 * 7 6 5 9 9 N 1.34778 * 119.99935 * 185.21977 * 7 6 5 10 10 C 1.46502 * 119.99582 * 175.01517 * 9 7 6 11 11 C 1.53000 * 109.46534 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47462 * 300.00333 * 11 10 9 13 13 C 1.53008 * 109.47233 * 60.00335 * 11 10 9 14 14 C 1.50704 * 109.46817 * 179.97438 * 11 10 9 15 15 H 1.07991 * 120.00260 * 0.02562 * 14 11 10 16 16 C 1.37882 * 119.99579 * 180.02562 * 14 11 10 17 17 N 1.31510 * 120.00586 * 359.97438 * 16 14 11 18 18 Si 1.86804 * 119.99736 * 180.02562 * 16 14 11 19 19 H 1.48506 * 109.46761 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47156 * 119.99559 * 18 16 14 21 21 H 1.48499 * 109.47057 * 240.00079 * 18 16 14 22 22 C 1.46924 * 118.73982 * 53.85715 * 6 5 4 23 23 C 1.53042 * 109.46043 * 218.90169 * 3 2 1 24 24 H 4.44647 * 5.63478 * 180.02562 * 4 1 2 25 25 H 1.08995 * 109.46426 * 338.86141 * 3 2 1 26 26 H 1.09006 * 109.49766 * 61.43065 * 4 3 2 27 27 H 1.09004 * 109.52237 * 301.35159 * 4 3 2 28 28 H 1.08993 * 109.58861 * 185.58030 * 5 4 3 29 29 H 1.08997 * 109.70246 * 65.21948 * 5 4 3 30 30 H 0.96998 * 119.99957 * 355.01868 * 9 7 6 31 31 H 1.08999 * 109.46950 * 60.00577 * 10 9 7 32 32 H 1.08994 * 109.47292 * 299.99762 * 10 9 7 33 33 H 1.08997 * 109.47817 * 60.00140 * 12 11 10 34 34 H 1.09004 * 109.47177 * 180.02562 * 12 11 10 35 35 H 1.09004 * 109.46800 * 299.99901 * 12 11 10 36 36 H 1.09003 * 109.46940 * 59.99619 * 13 11 10 37 37 H 1.08994 * 109.47197 * 179.97438 * 13 11 10 38 38 H 1.09000 * 109.47047 * 299.99845 * 13 11 10 39 39 H 0.96999 * 120.00270 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.58342 * 65.93187 * 22 6 5 41 41 H 1.09000 * 109.58624 * 186.35188 * 22 6 5 42 42 H 1.08997 * 109.49669 * 298.56866 * 23 3 2 43 43 H 1.09000 * 109.49776 * 58.62746 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.2225 -1.4259 5 6 4.6872 0.1881 -1.4275 6 7 5.1833 1.1667 -0.4502 7 6 6.0771 2.1077 -0.8138 8 8 6.4088 2.2132 -1.9787 9 7 6.6031 2.9317 0.1140 10 6 7.6542 3.8808 -0.2609 11 6 8.0731 4.6896 0.9684 12 6 6.8647 5.4550 1.5114 13 6 8.6027 3.7416 2.0464 14 6 9.1548 5.6655 0.5830 15 1 9.5079 5.7052 -0.4368 16 6 9.6937 6.5077 1.5324 17 7 9.2635 6.4597 2.7742 18 14 11.0341 7.7179 1.0545 19 1 11.3378 7.5742 -0.3921 20 1 10.5718 9.1022 1.3286 21 1 12.2585 7.4387 1.8469 22 6 4.6910 1.0962 0.9323 23 6 3.1553 1.1239 0.9062 24 1 -1.0500 0.0002 0.0001 25 1 3.0096 -0.9577 0.3706 26 1 2.8132 1.1919 -1.7880 27 1 2.7735 -0.5646 -2.0759 28 1 5.0574 0.4434 -2.4204 29 1 5.0327 -0.8088 -1.1539 30 1 6.2857 2.8963 1.0299 31 1 7.2771 4.5558 -1.0291 32 1 8.5153 3.3355 -0.6472 33 1 6.0826 4.7489 1.7903 34 1 7.1633 6.0315 2.3870 35 1 6.4875 6.1303 0.7434 36 1 9.4636 3.1963 1.6596 37 1 8.9015 4.3178 2.9220 38 1 7.8206 3.0354 2.3253 39 1 9.6423 7.0525 3.4420 40 1 5.0348 0.1715 1.3958 41 1 5.0637 1.9508 1.4969 42 1 2.8128 2.0847 0.5221 43 1 2.7722 0.9784 1.9162 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826952369.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:12 Heat of formation + Delta-G solvation = 16.759060 kcal Electronic energy + Delta-G solvation = -22091.975431 eV Core-core repulsion = 18945.491000 eV Total energy + Delta-G solvation = -3146.484431 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.20933 -37.94500 -36.31040 -34.30410 -33.32387 -31.53586 -31.16743 -30.43614 -26.13592 -25.71428 -25.41039 -24.49664 -23.28780 -21.46542 -19.45634 -18.95329 -18.44907 -17.72711 -15.98547 -15.69548 -15.37633 -14.98500 -14.78513 -14.41725 -14.33234 -13.82730 -13.67641 -13.42661 -12.85383 -12.64717 -12.56073 -12.11023 -11.76093 -11.48727 -11.38624 -11.36525 -11.29585 -11.18052 -10.86643 -10.64454 -10.37440 -10.28445 -10.23307 -10.17456 -9.69704 -9.61821 -9.28369 -8.76953 -8.68459 -8.39545 -8.11656 -6.01128 -4.10787 2.60287 2.62718 2.95234 3.28169 3.36777 3.41942 3.59757 4.06839 4.27735 4.42740 4.61548 4.69226 4.88314 4.95842 5.12706 5.25762 5.25837 5.37798 5.53134 5.62688 5.67514 5.79037 5.87291 5.90588 6.11602 6.22328 6.38821 6.51792 6.62094 6.81850 6.83219 6.93397 7.04661 7.11854 7.27138 7.40586 7.40957 7.57136 7.71232 8.02422 8.13726 8.38743 8.44426 8.89366 9.04417 9.55001 11.00392 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034798 B = 0.003582 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.461506 B = 7815.952730 C = 8213.651917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.176 4.176 3 C 0.021 3.979 4 C -0.125 4.125 5 C 0.131 3.869 6 N -0.637 5.637 7 C 0.702 3.298 8 O -0.598 6.598 9 N -0.733 5.733 10 C 0.149 3.851 11 C 0.056 3.944 12 C -0.129 4.129 13 C -0.129 4.129 14 C -0.504 4.504 15 H 0.058 0.942 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.113 3.887 23 C -0.125 4.125 24 H 0.216 0.784 25 H 0.094 0.906 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.393 0.607 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.004 0.996 34 H 0.085 0.915 35 H 0.026 0.974 36 H 0.027 0.973 37 H 0.085 0.915 38 H 0.004 0.996 39 H 0.259 0.741 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.516 -13.013 -1.068 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.176 4.176 3 C 0.003 3.997 4 C -0.163 4.163 5 C 0.008 3.992 6 N -0.376 5.376 7 C 0.403 3.597 8 O -0.477 6.477 9 N -0.390 5.390 10 C 0.026 3.974 11 C 0.055 3.945 12 C -0.187 4.187 13 C -0.187 4.187 14 C -0.543 4.543 15 H 0.077 0.923 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.721 3.279 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.011 4.011 23 C -0.164 4.164 24 H 0.233 0.767 25 H 0.112 0.888 26 H 0.090 0.910 27 H 0.095 0.905 28 H 0.115 0.885 29 H 0.082 0.918 30 H 0.230 0.770 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.023 0.977 34 H 0.104 0.896 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.104 0.896 38 H 0.023 0.977 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.163 -12.807 -1.750 18.449 hybrid contribution 0.219 0.645 0.338 0.761 sum -12.944 -12.161 -1.411 17.817 Atomic orbital electron populations 1.24884 0.95900 1.01282 1.00952 1.23081 0.94257 1.00088 1.00214 1.18320 0.84345 1.00092 0.96972 1.21972 0.95983 1.03228 0.95167 1.21377 0.92204 0.91214 0.94441 1.47286 1.46392 1.33547 1.10376 1.15977 0.79117 0.79289 0.85277 1.90865 1.65607 1.73996 1.17190 1.45685 1.42107 1.39689 1.11486 1.21591 0.87191 0.89378 0.99231 1.18367 0.93977 0.92297 0.89865 1.21814 0.95507 0.98945 1.02425 1.21820 0.97305 0.97258 1.02325 1.21033 1.19186 1.18345 0.95686 0.92337 1.24880 0.96710 0.97030 0.94923 1.69811 1.42498 1.38561 1.01658 0.86519 0.81719 0.80933 0.78740 1.19737 1.21084 1.21087 1.21684 0.93306 1.02708 0.83419 1.22028 0.95442 0.98922 0.99997 0.76749 0.88848 0.90974 0.90485 0.88463 0.91812 0.76977 0.92913 0.93020 0.97703 0.89630 0.95434 0.95428 0.89624 0.97674 0.93094 0.91130 0.89774 0.90824 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.91 19.25 29.55 0.57 -1.34 16 2 C -0.18 -1.77 12.56 -37.12 -0.47 -2.23 16 3 C 0.02 0.19 2.53 -93.36 -0.24 -0.05 16 4 C -0.13 -1.22 5.32 -26.61 -0.14 -1.36 16 5 C 0.13 1.50 6.44 -3.71 -0.02 1.48 16 6 N -0.64 -8.73 2.97 -178.24 -0.53 -9.26 16 7 C 0.70 12.85 8.30 -86.91 -0.72 12.13 16 8 O -0.60 -13.15 15.77 5.29 0.08 -13.07 16 9 N -0.73 -13.51 4.87 -65.23 -0.32 -13.83 16 10 C 0.15 3.24 4.51 -4.04 -0.02 3.22 16 11 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 12 C -0.13 -2.92 8.08 37.15 0.30 -2.62 16 13 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 14 C -0.50 -13.25 8.01 -34.44 -0.28 -13.53 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 16 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 17 N -0.89 -23.58 9.35 55.43 0.52 -23.07 16 18 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.11 1.19 6.42 -3.49 -0.02 1.17 16 23 C -0.13 -1.19 5.33 -26.39 -0.14 -1.33 16 24 H 0.22 1.20 7.80 -54.09 -0.42 0.78 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.10 1.30 6.99 -51.93 -0.36 0.93 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.39 6.52 3.65 -40.82 -0.15 6.37 16 31 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 34 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 38 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 39 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.93 5.64 -51.93 -0.29 0.64 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 339.83 15.07 5.12 5.12 Total: -1.00 -29.90 339.83 -7.95 -37.85 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.76 Total: 4.72 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: -1.05 Total: -4.21 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: -0.33 Total: -46.16 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.08 Total: -13.07 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.90 -7.95 -37.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826952369.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.612 kcal (2) G-P(sol) polarization free energy of solvation -29.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds