Wall clock time and date at job start Tue Mar 31 2020 00:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33001 * 119.99966 * 2 1 4 4 C 1.47096 * 120.00014 * 172.71619 * 3 2 1 5 5 O 1.21616 * 119.99971 * 3.95407 * 4 3 2 6 6 N 1.34776 * 119.99945 * 183.95534 * 4 3 2 7 7 C 1.47080 * 120.88193 * 354.56043 * 6 4 3 8 8 C 1.53694 * 108.27802 * 128.75820 * 7 6 4 9 9 N 1.46900 * 109.25776 * 54.08294 * 8 7 6 10 10 C 1.46898 * 111.00007 * 172.61034 * 9 8 7 11 11 C 1.50700 * 109.46718 * 294.30064 * 10 9 8 12 12 H 1.07995 * 120.00603 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99748 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00255 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00138 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46944 * 90.00232 * 15 13 11 17 17 H 1.48503 * 109.47220 * 210.00182 * 15 13 11 18 18 H 1.48504 * 109.46947 * 330.00013 * 15 13 11 19 19 C 1.46906 * 111.26796 * 296.75696 * 9 8 7 20 20 C 1.47087 * 120.88150 * 174.84144 * 6 4 3 21 21 C 1.50701 * 120.00127 * 179.73244 * 2 1 3 22 22 C 1.52995 * 117.50113 * 357.09202 * 21 2 1 23 23 C 1.53003 * 60.00323 * 252.51361 * 22 21 2 24 24 H 1.08999 * 109.46921 * 270.26662 * 1 2 3 25 25 H 1.08996 * 109.47312 * 30.27160 * 1 2 3 26 26 H 1.09004 * 109.46974 * 150.27443 * 1 2 3 27 27 H 1.07996 * 119.99685 * 352.72064 * 3 2 1 28 28 H 1.09009 * 109.62697 * 248.52649 * 7 6 4 29 29 H 1.09004 * 109.62590 * 9.10363 * 7 6 4 30 30 H 1.08999 * 109.64540 * 294.08214 * 8 7 6 31 31 H 1.08996 * 109.41968 * 173.94773 * 8 7 6 32 32 H 1.09001 * 109.47105 * 54.30099 * 10 9 8 33 33 H 1.08999 * 109.47023 * 174.30009 * 10 9 8 34 34 H 0.97000 * 120.00490 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.49412 * 303.14716 * 19 9 8 36 36 H 1.08992 * 109.51310 * 183.08080 * 19 9 8 37 37 H 1.09000 * 109.62672 * 350.89557 * 20 6 4 38 38 H 1.08997 * 109.62842 * 111.47429 * 20 6 4 39 39 H 1.09004 * 115.55423 * 142.80833 * 21 2 1 40 40 H 1.09010 * 117.49574 * 359.97438 * 22 21 2 41 41 H 1.08994 * 117.50130 * 145.02349 * 22 21 2 42 42 H 1.08998 * 117.49547 * 252.50984 * 23 22 21 43 43 H 1.08997 * 117.51988 * 107.47578 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6340 1.1570 0.1615 5 8 4.2427 0.1059 0.2228 6 7 4.2990 2.3265 0.2415 7 6 3.6004 3.6067 0.0512 8 6 3.9388 4.5217 1.2388 9 7 5.3983 4.6249 1.3705 10 6 5.7662 5.6259 2.3807 11 6 5.3439 6.9936 1.9096 12 1 4.8517 7.1079 0.9551 13 6 5.5867 8.0993 2.6967 14 7 6.1874 7.9604 3.8584 15 14 5.0638 9.7948 2.1125 16 1 3.6821 10.0747 2.5791 17 1 5.9894 10.8161 2.6652 18 1 5.1043 9.8413 0.6287 19 6 5.9989 3.3202 1.6790 20 6 5.7439 2.3562 0.5155 21 6 2.2605 -1.3051 0.0061 22 6 1.4400 -2.5942 0.0810 23 6 2.2414 -2.1258 1.2973 24 1 -0.3633 0.0048 1.0277 25 1 -0.3634 0.8875 -0.5180 26 1 -0.3633 -0.8925 -0.5096 27 1 1.6384 2.0833 -0.1185 28 1 3.9319 4.0701 -0.8781 29 1 2.5246 3.4349 0.0145 30 1 3.5196 4.1042 2.1542 31 1 3.5185 5.5122 1.0645 32 1 5.2653 5.3946 3.3207 33 1 6.8457 5.6106 2.5309 34 1 6.3586 8.7383 4.4120 35 1 5.5510 2.9194 2.5883 36 1 7.0726 3.4389 1.8243 37 1 6.0858 1.3572 0.7859 38 1 6.2774 2.7017 -0.3700 39 1 3.1740 -1.3233 -0.5883 40 1 0.3551 -2.4984 0.1262 41 1 1.8135 -3.4609 -0.4644 42 1 3.1421 -2.6843 1.5520 43 1 1.6841 -1.7216 2.1423 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827484767.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:43 Heat of formation + Delta-G solvation = 20.380140 kcal Electronic energy + Delta-G solvation = -21802.176921 eV Core-core repulsion = 18655.849512 eV Total energy + Delta-G solvation = -3146.327409 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.07722 -38.26720 -37.06475 -34.33858 -33.54232 -32.40187 -30.84336 -28.63373 -27.78081 -25.51912 -23.71551 -23.09312 -22.44335 -21.97132 -20.75543 -19.21309 -18.03181 -17.19721 -16.38938 -16.05397 -15.37780 -14.81491 -14.76269 -14.44764 -14.35391 -14.05911 -13.66072 -13.49921 -13.29615 -12.93886 -12.68322 -12.48995 -12.19300 -11.87071 -11.68572 -11.37628 -11.26798 -11.05368 -10.99369 -10.83497 -10.73860 -10.63875 -10.52979 -10.33739 -9.87737 -9.29751 -9.26491 -9.01895 -8.49693 -8.31759 -7.31927 -6.07138 -4.09274 1.29382 3.23098 3.28384 3.35183 3.38341 3.39294 3.87270 4.37791 4.42594 4.59029 4.78217 4.87967 4.95705 4.98462 5.15939 5.27892 5.29040 5.36947 5.38818 5.44568 5.49023 5.59617 5.66740 5.68754 5.78455 5.80741 5.90006 6.00890 6.05955 6.18857 6.28130 6.29804 6.43986 6.47934 6.51391 6.78258 7.22118 7.27805 7.66072 7.74525 8.01366 8.12144 8.40351 8.47198 8.98014 9.55288 11.03687 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032377 B = 0.003438 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.603608 B = 8142.216227 C = 8571.119621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.011 4.011 3 C -0.223 4.223 4 C 0.546 3.454 5 O -0.549 6.549 6 N -0.605 5.605 7 C 0.108 3.892 8 C 0.050 3.950 9 N -0.536 5.536 10 C 0.193 3.807 11 C -0.509 4.509 12 H 0.064 0.936 13 C 0.055 3.945 14 N -0.898 5.898 15 Si 0.898 3.102 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.272 1.272 19 C 0.041 3.959 20 C 0.120 3.880 21 C -0.115 4.115 22 C -0.192 4.192 23 C -0.156 4.156 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.131 0.869 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.025 0.975 31 H 0.096 0.904 32 H -0.009 1.009 33 H 0.032 0.968 34 H 0.262 0.738 35 H 0.025 0.975 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.136 0.864 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.523 -15.988 -7.597 20.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.013 4.013 3 C -0.243 4.243 4 C 0.338 3.662 5 O -0.430 6.430 6 N -0.337 5.337 7 C -0.015 4.015 8 C -0.079 4.079 9 N -0.261 5.261 10 C 0.069 3.931 11 C -0.548 4.548 12 H 0.082 0.918 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.726 3.274 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.197 1.197 19 C -0.088 4.088 20 C -0.003 4.003 21 C -0.132 4.132 22 C -0.229 4.229 23 C -0.194 4.194 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.148 0.852 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.043 0.957 31 H 0.114 0.886 32 H 0.009 0.991 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.154 0.846 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.923 -16.246 -7.849 20.591 hybrid contribution -0.510 1.008 0.711 1.334 sum -10.433 -15.238 -7.138 19.799 Atomic orbital electron populations 1.21015 0.91209 1.03332 1.02846 1.21807 0.95135 0.93360 0.90991 1.22519 0.93807 0.98573 1.09438 1.18497 0.87886 0.83167 0.76685 1.90686 1.69866 1.30645 1.51819 1.48123 1.09655 1.06070 1.69887 1.22164 0.96396 0.83065 0.99860 1.22417 0.90379 0.99860 0.95268 1.62078 1.07989 1.05599 1.50421 1.19726 0.96489 0.89190 0.87739 1.21139 1.38439 0.90893 1.04328 0.91793 1.25001 0.95324 0.99373 0.94906 1.69959 1.42215 1.30353 1.11191 0.86496 0.78271 0.83621 0.79022 1.20735 1.21250 1.19720 1.22406 1.00395 0.90695 0.95326 1.21715 0.79952 1.00043 0.98571 1.21501 1.00723 0.88062 1.02945 1.23143 0.98466 0.98394 1.02873 1.22790 1.02157 1.02846 0.91560 0.90404 0.90923 0.90838 0.85168 0.90677 0.89994 0.95705 0.88570 0.99144 0.95035 0.92863 0.95631 0.90132 0.89517 0.91092 0.84619 0.88759 0.88811 0.88645 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.99 9.46 36.00 0.34 -0.64 16 2 C -0.01 -0.12 5.80 -101.17 -0.59 -0.71 16 3 C -0.22 -2.76 8.96 -37.81 -0.34 -3.10 16 4 C 0.55 8.45 7.61 -12.67 -0.10 8.36 16 5 O -0.55 -9.58 12.68 5.26 0.07 -9.51 16 6 N -0.61 -9.47 3.00 -173.57 -0.52 -9.99 16 7 C 0.11 1.58 6.55 -3.36 -0.02 1.55 16 8 C 0.05 0.92 5.47 -3.46 -0.02 0.90 16 9 N -0.54 -11.24 4.62 -235.47 -1.09 -12.32 16 10 C 0.19 4.94 4.72 -4.98 -0.02 4.92 16 11 C -0.51 -13.88 8.41 -34.44 -0.29 -14.17 16 12 H 0.06 1.70 7.13 -52.49 -0.37 1.33 16 13 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 15 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 19 C 0.04 0.75 5.62 -3.70 -0.02 0.73 16 20 C 0.12 1.93 6.58 -3.60 -0.02 1.90 16 21 C -0.11 -1.34 4.31 -91.77 -0.40 -1.74 16 22 C -0.19 -1.74 9.78 -26.73 -0.26 -2.00 16 23 C -0.16 -1.69 10.23 -26.73 -0.27 -1.96 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.49 8.06 -51.93 -0.42 0.07 16 26 H 0.07 0.49 6.43 -51.93 -0.33 0.15 16 27 H 0.13 1.35 5.88 -52.49 -0.31 1.04 16 28 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 29 H 0.08 0.96 5.36 -51.93 -0.28 0.68 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 1.85 6.67 -51.93 -0.35 1.51 16 32 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 33 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 1.43 7.99 -51.93 -0.41 1.01 16 37 H 0.09 1.38 7.10 -51.93 -0.37 1.01 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.14 1.91 6.24 -51.93 -0.32 1.58 16 40 H 0.09 0.71 6.35 -51.92 -0.33 0.38 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 340.16 15.07 5.13 5.13 Total: -1.00 -30.84 340.16 -9.66 -40.50 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.85 Total: 0.21 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -2.11 Total: -4.51 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: -0.87 Total: -47.92 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.07 Total: -9.51 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.84 -9.66 -40.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827484767.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.879 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds