Wall clock time and date at job start Tue Mar 31 2020 00:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33001 * 119.99966 * 2 1 4 4 C 1.47096 * 120.00014 * 172.71619 * 3 2 1 5 5 O 1.21616 * 119.99971 * 3.95407 * 4 3 2 6 6 N 1.34776 * 119.99945 * 183.95534 * 4 3 2 7 7 C 1.47080 * 120.88193 * 354.56043 * 6 4 3 8 8 C 1.53694 * 108.27802 * 128.75820 * 7 6 4 9 9 N 1.46900 * 109.25776 * 54.08294 * 8 7 6 10 10 C 1.46898 * 111.00007 * 172.61034 * 9 8 7 11 11 C 1.50700 * 109.46718 * 294.30064 * 10 9 8 12 12 H 1.07995 * 120.00603 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99748 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00255 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00138 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46944 * 90.00232 * 15 13 11 17 17 H 1.48503 * 109.47220 * 210.00182 * 15 13 11 18 18 H 1.48504 * 109.46947 * 330.00013 * 15 13 11 19 19 C 1.46906 * 111.26796 * 296.75696 * 9 8 7 20 20 C 1.47087 * 120.88150 * 174.84144 * 6 4 3 21 21 C 1.50701 * 120.00127 * 179.73244 * 2 1 3 22 22 C 1.52995 * 117.50113 * 357.09202 * 21 2 1 23 23 C 1.53003 * 60.00323 * 252.51361 * 22 21 2 24 24 H 1.08999 * 109.46921 * 270.26662 * 1 2 3 25 25 H 1.08996 * 109.47312 * 30.27160 * 1 2 3 26 26 H 1.09004 * 109.46974 * 150.27443 * 1 2 3 27 27 H 1.07996 * 119.99685 * 352.72064 * 3 2 1 28 28 H 1.09009 * 109.62697 * 248.52649 * 7 6 4 29 29 H 1.09004 * 109.62590 * 9.10363 * 7 6 4 30 30 H 1.08999 * 109.64540 * 294.08214 * 8 7 6 31 31 H 1.08996 * 109.41968 * 173.94773 * 8 7 6 32 32 H 1.09001 * 109.47105 * 54.30099 * 10 9 8 33 33 H 1.08999 * 109.47023 * 174.30009 * 10 9 8 34 34 H 0.97000 * 120.00490 * 179.97438 * 14 13 11 35 35 H 1.09000 * 109.49412 * 303.14716 * 19 9 8 36 36 H 1.08992 * 109.51310 * 183.08080 * 19 9 8 37 37 H 1.09000 * 109.62672 * 350.89557 * 20 6 4 38 38 H 1.08997 * 109.62842 * 111.47429 * 20 6 4 39 39 H 1.09004 * 115.55423 * 142.80833 * 21 2 1 40 40 H 1.09010 * 117.49574 * 359.97438 * 22 21 2 41 41 H 1.08994 * 117.50130 * 145.02349 * 22 21 2 42 42 H 1.08998 * 117.49547 * 252.50984 * 23 22 21 43 43 H 1.08997 * 117.51988 * 107.47578 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6340 1.1570 0.1615 5 8 4.2427 0.1059 0.2228 6 7 4.2990 2.3265 0.2415 7 6 3.6004 3.6067 0.0512 8 6 3.9388 4.5217 1.2388 9 7 5.3983 4.6249 1.3705 10 6 5.7662 5.6259 2.3807 11 6 5.3439 6.9936 1.9096 12 1 4.8517 7.1079 0.9551 13 6 5.5867 8.0993 2.6967 14 7 6.1874 7.9604 3.8584 15 14 5.0638 9.7948 2.1125 16 1 3.6821 10.0747 2.5791 17 1 5.9894 10.8161 2.6652 18 1 5.1043 9.8413 0.6287 19 6 5.9989 3.3202 1.6790 20 6 5.7439 2.3562 0.5155 21 6 2.2605 -1.3051 0.0061 22 6 1.4400 -2.5942 0.0810 23 6 2.2414 -2.1258 1.2973 24 1 -0.3633 0.0048 1.0277 25 1 -0.3634 0.8875 -0.5180 26 1 -0.3633 -0.8925 -0.5096 27 1 1.6384 2.0833 -0.1185 28 1 3.9319 4.0701 -0.8781 29 1 2.5246 3.4349 0.0145 30 1 3.5196 4.1042 2.1542 31 1 3.5185 5.5122 1.0645 32 1 5.2653 5.3946 3.3207 33 1 6.8457 5.6106 2.5309 34 1 6.3586 8.7383 4.4120 35 1 5.5510 2.9194 2.5883 36 1 7.0726 3.4389 1.8243 37 1 6.0858 1.3572 0.7859 38 1 6.2774 2.7017 -0.3700 39 1 3.1740 -1.3233 -0.5883 40 1 0.3551 -2.4984 0.1262 41 1 1.8135 -3.4609 -0.4644 42 1 3.1421 -2.6843 1.5520 43 1 1.6841 -1.7216 2.1423 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827484767.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:42 Heat of formation + Delta-G solvation = 1.554695 kcal Electronic energy + Delta-G solvation = -21802.993254 eV Core-core repulsion = 18655.849512 eV Total energy + Delta-G solvation = -3147.143741 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.27384 -39.43896 -38.26657 -35.91794 -34.54595 -34.22402 -32.21250 -30.12209 -28.93048 -27.16085 -24.90087 -24.44566 -23.62875 -23.19053 -22.14260 -20.43349 -19.06963 -18.48901 -18.35627 -17.08520 -16.72727 -16.43992 -16.01705 -15.91580 -15.51724 -15.48131 -15.23469 -14.59607 -14.16899 -14.11718 -13.99898 -13.77510 -13.45487 -13.18207 -13.02857 -12.74668 -12.59180 -12.47610 -12.38503 -12.31092 -12.12432 -12.10990 -11.80374 -11.63352 -11.28857 -11.20502 -10.62156 -10.40504 -9.98502 -9.58829 -9.06136 -8.20381 -6.31081 0.36145 1.43406 1.45064 1.56600 2.03793 2.27613 2.41390 3.05214 3.11979 3.21908 3.57796 3.65935 3.96146 4.03239 4.06829 4.13804 4.19713 4.22625 4.26668 4.38777 4.43957 4.59557 4.69201 4.72316 4.75021 4.84284 4.86056 4.93410 4.96501 5.01264 5.07953 5.18419 5.21543 5.24981 5.28302 5.44964 5.51883 5.63375 5.67033 6.01691 6.23935 6.50107 6.56008 6.84911 7.22361 7.39091 8.91124 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032377 B = 0.003438 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.603608 B = 8142.216227 C = 8571.119621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.005 3.995 3 C -0.247 4.247 4 C 0.540 3.460 5 O -0.577 6.577 6 N -0.612 5.612 7 C 0.120 3.880 8 C 0.050 3.950 9 N -0.539 5.539 10 C 0.208 3.792 11 C -0.521 4.521 12 H 0.070 0.930 13 C 0.000 4.000 14 N -0.937 5.937 15 Si 0.972 3.028 16 H -0.271 1.271 17 H -0.286 1.286 18 H -0.261 1.261 19 C 0.045 3.955 20 C 0.129 3.871 21 C -0.140 4.140 22 C -0.164 4.164 23 C -0.167 4.167 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.153 0.847 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.014 0.986 31 H 0.087 0.913 32 H -0.042 1.042 33 H 0.004 0.996 34 H 0.264 0.736 35 H 0.013 0.987 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.203 -16.182 -9.271 22.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.003 3.997 3 C -0.267 4.267 4 C 0.333 3.667 5 O -0.459 6.459 6 N -0.344 5.344 7 C -0.002 4.002 8 C -0.079 4.079 9 N -0.264 5.264 10 C 0.082 3.918 11 C -0.559 4.559 12 H 0.088 0.912 13 C -0.198 4.198 14 N -0.578 5.578 15 Si 0.796 3.204 16 H -0.197 1.197 17 H -0.212 1.212 18 H -0.185 1.185 19 C -0.085 4.085 20 C 0.006 3.994 21 C -0.158 4.158 22 C -0.200 4.200 23 C -0.205 4.205 24 H 0.107 0.893 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.171 0.829 28 H 0.101 0.899 29 H 0.136 0.864 30 H 0.032 0.968 31 H 0.106 0.894 32 H -0.024 1.024 33 H 0.022 0.978 34 H 0.073 0.927 35 H 0.031 0.969 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.125 0.875 40 H 0.136 0.864 41 H 0.120 0.880 42 H 0.104 0.896 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.621 -16.459 -9.544 22.832 hybrid contribution 0.345 0.924 1.261 1.601 sum -12.276 -15.535 -8.283 21.463 Atomic orbital electron populations 1.21116 0.88273 1.04918 1.03952 1.22189 0.97035 0.92399 0.88035 1.22540 0.91797 1.00201 1.12175 1.19096 0.89274 0.82465 0.75834 1.90683 1.70769 1.31455 1.53040 1.48215 1.09309 1.06708 1.70183 1.22153 0.98435 0.81709 0.97948 1.22466 0.88334 1.00432 0.96653 1.62018 1.10055 1.05984 1.48346 1.19379 0.94311 0.90529 0.87577 1.21454 1.38301 0.91645 1.04550 0.91153 1.25964 0.95165 1.03816 0.94875 1.70101 1.43456 1.31662 1.12568 0.85337 0.78043 0.78022 0.78948 1.19668 1.21171 1.18529 1.22423 1.00136 0.89902 0.95991 1.21537 0.81051 0.99148 0.97638 1.21435 1.00946 0.89950 1.03431 1.23247 0.99371 0.96838 1.00558 1.22825 1.02581 1.03090 0.91963 0.89253 0.89363 0.89309 0.82928 0.89879 0.86417 0.96809 0.89448 1.02407 0.97823 0.92725 0.96902 0.90168 0.89451 0.90345 0.87514 0.86403 0.87977 0.89616 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 9.46 71.23 0.67 -0.77 16 2 C 0.01 0.11 5.80 -17.62 -0.10 0.00 16 3 C -0.25 -5.60 8.96 23.43 0.21 -5.39 16 4 C 0.54 16.34 7.61 86.57 0.66 17.00 16 5 O -0.58 -20.33 12.68 -4.08 -0.05 -20.38 16 6 N -0.61 -18.68 3.00 -821.29 -2.47 -21.14 16 7 C 0.12 3.29 6.55 86.50 0.57 3.86 16 8 C 0.05 1.83 5.47 86.54 0.47 2.30 16 9 N -0.54 -23.11 4.62 -898.89 -4.15 -27.26 16 10 C 0.21 11.09 4.72 85.56 0.40 11.49 16 11 C -0.52 -28.80 8.41 25.60 0.22 -28.59 16 12 H 0.07 3.72 7.13 -2.91 -0.02 3.70 16 13 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 14 N -0.94 -56.25 13.29 21.45 0.28 -55.96 16 15 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 19 C 0.04 1.68 5.62 86.38 0.49 2.17 16 20 C 0.13 4.17 6.58 86.35 0.57 4.74 16 21 C -0.14 -3.11 4.31 -11.54 -0.05 -3.16 16 22 C -0.16 -2.54 9.78 30.59 0.30 -2.24 16 23 C -0.17 -3.44 10.23 30.60 0.31 -3.12 16 24 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.09 0.79 8.06 -2.39 -0.02 0.77 16 26 H 0.09 0.77 6.43 -2.38 -0.02 0.76 16 27 H 0.15 2.64 5.88 -2.91 -0.02 2.63 16 28 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 29 H 0.12 2.40 5.36 -2.38 -0.01 2.39 16 30 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.09 3.34 6.67 -2.39 -0.02 3.32 16 32 H -0.04 -2.45 8.12 -2.39 -0.02 -2.47 16 33 H 0.00 0.21 7.97 -2.39 -0.02 0.19 16 34 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 35 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.08 2.97 7.99 -2.39 -0.02 2.95 16 37 H 0.09 2.82 7.10 -2.39 -0.02 2.80 16 38 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.11 3.04 6.24 -2.38 -0.01 3.03 16 40 H 0.12 1.29 6.35 -2.38 -0.02 1.28 16 41 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -68.67 340.16 1.81 -66.86 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.99 Total: 13.92 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 5.18 Total: -1.27 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -6.33 Total: -104.37 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.05 Total: -20.38 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -68.67 1.81 -66.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827484767.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.418 kcal (2) G-P(sol) polarization free energy of solvation -68.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds