Wall clock time and date at job start Tue Mar 31 2020 00:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47103 * 2 1 4 4 C 1.53007 * 109.46856 * 119.99817 * 2 1 3 5 5 N 1.46893 * 109.46973 * 60.95830 * 4 2 1 6 6 C 1.46896 * 111.00536 * 73.48969 * 5 4 2 7 7 C 1.50698 * 109.47332 * 279.60557 * 6 5 4 8 8 H 1.08003 * 119.99759 * 2.96902 * 7 6 5 9 9 C 1.37880 * 120.00108 * 182.96604 * 7 6 5 10 10 N 1.31506 * 120.00013 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99748 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47467 * 60.00089 * 11 9 7 13 13 H 1.48498 * 109.47171 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47255 * 299.99854 * 11 9 7 15 15 C 1.46906 * 110.99727 * 197.44347 * 5 4 2 16 16 C 1.50695 * 109.47089 * 66.04469 * 15 5 4 17 17 C 1.35458 * 126.77557 * 89.98554 * 16 15 5 18 18 C 1.41380 * 103.98337 * 180.02562 * 17 16 15 19 19 C 1.50700 * 126.79773 * 179.97438 * 18 17 16 20 20 C 1.52998 * 117.50257 * 343.74233 * 19 18 17 21 21 C 1.52999 * 117.49837 * 275.08342 * 19 18 17 22 22 N 1.30169 * 106.39958 * 359.97438 * 18 17 16 23 23 O 1.20928 * 111.60407 * 359.97438 * 22 18 17 24 24 H 1.09002 * 109.47398 * 299.99939 * 1 2 3 25 25 H 1.09005 * 109.47044 * 60.00552 * 1 2 3 26 26 H 1.09007 * 109.47232 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47235 * 239.99906 * 2 1 3 28 28 H 1.09006 * 109.47298 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47346 * 299.99944 * 3 2 1 30 30 H 1.09002 * 109.46944 * 59.99782 * 3 2 1 31 31 H 1.08997 * 109.47174 * 300.95484 * 4 2 1 32 32 H 1.09002 * 109.46985 * 180.95437 * 4 2 1 33 33 H 1.09006 * 109.46811 * 39.60104 * 6 5 4 34 34 H 1.09004 * 109.47655 * 159.60037 * 6 5 4 35 35 H 0.97003 * 119.99818 * 180.02562 * 10 9 7 36 36 H 1.09000 * 109.46928 * 306.04505 * 15 5 4 37 37 H 1.09003 * 109.46801 * 186.04442 * 15 5 4 38 38 H 1.07998 * 128.00909 * 0.06340 * 17 16 15 39 39 H 1.08998 * 115.54972 * 129.41821 * 19 18 17 40 40 H 1.08993 * 117.49731 * 0.02562 * 20 19 18 41 41 H 1.09001 * 117.49554 * 145.01902 * 20 19 18 42 42 H 1.09002 * 117.50003 * 214.98225 * 21 19 18 43 43 H 1.08999 * 117.49969 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.5692 -2.1127 1.2378 6 6 2.3024 -2.9083 0.2442 7 6 1.7248 -2.6581 -1.1251 8 1 0.9279 -1.9403 -1.2520 9 6 2.2138 -3.3454 -2.2157 10 7 3.1839 -4.2197 -2.0611 11 14 1.4983 -3.0346 -3.9130 12 1 1.6856 -1.6067 -4.2754 13 1 2.1912 -3.8930 -4.9071 14 1 0.0489 -3.3574 -3.9059 15 6 1.6724 -2.7144 2.5740 16 6 0.7186 -2.0209 3.5122 17 6 -0.5699 -2.3605 3.7557 18 6 -1.0038 -1.4006 4.6986 19 6 -2.3718 -1.3031 5.3234 20 6 -3.5114 -2.0722 4.6523 21 6 -3.4509 -0.5464 4.5465 22 7 0.0122 -0.6177 4.9202 23 8 0.9779 -0.9469 4.2710 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6627 -0.2174 2.1392 32 1 3.1298 -0.7065 1.2580 33 1 3.3539 -2.6212 0.2530 34 1 2.2128 -3.9669 0.4884 35 1 3.5281 -4.7030 -2.8285 36 1 2.6915 -2.6036 2.9446 37 1 1.4199 -3.7732 2.5161 38 1 -1.1348 -3.1761 3.3289 39 1 -2.3877 -1.2271 6.4106 40 1 -3.2718 -2.6490 3.7591 41 1 -4.2773 -2.5020 5.2980 42 1 -4.1771 0.0271 5.1227 43 1 -3.1714 -0.1187 3.5837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851779054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:31 Heat of formation + Delta-G solvation = 81.460438 kcal Electronic energy + Delta-G solvation = -22379.769889 eV Core-core repulsion = 19236.091121 eV Total energy + Delta-G solvation = -3143.678768 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.65242 -37.69536 -37.57717 -34.14053 -33.06061 -32.76822 -31.33884 -27.55750 -26.46074 -26.37692 -24.48722 -23.92881 -22.71396 -21.91916 -21.07200 -19.50290 -19.07317 -17.37144 -17.03590 -16.29561 -15.78792 -15.14854 -14.73324 -14.56133 -14.09893 -14.00514 -13.76036 -13.11048 -12.73589 -12.44874 -12.19265 -12.00814 -11.93690 -11.74463 -11.66522 -11.36796 -11.28522 -11.08077 -11.02251 -10.75668 -10.58021 -10.43553 -10.22481 -10.16554 -9.99399 -9.63985 -9.49479 -9.12763 -9.06301 -8.41382 -7.40060 -6.05184 -4.04263 1.72751 2.40648 3.31817 3.36306 3.36581 3.39739 3.60466 4.13549 4.39920 4.63173 4.71109 4.89034 4.93054 5.09457 5.29586 5.31959 5.46565 5.53317 5.55434 5.63191 5.70890 5.75203 5.89456 5.94979 5.96615 5.99759 6.05082 6.10370 6.25814 6.27223 6.29449 6.44134 6.52696 6.66183 6.77559 7.07937 7.16694 7.22224 7.37482 7.79835 8.01603 8.10029 8.45087 8.51480 9.01953 9.58062 11.05265 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018803 B = 0.004735 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.796946 B = 5912.198702 C = 6021.957055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.105 4.105 3 C -0.144 4.144 4 C 0.072 3.928 5 N -0.528 5.528 6 C 0.193 3.807 7 C -0.505 4.505 8 H 0.078 0.922 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.893 3.107 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.129 3.871 16 C 0.000 4.000 17 C -0.219 4.219 18 C 0.044 3.956 19 C -0.083 4.083 20 C -0.163 4.163 21 C -0.164 4.164 22 N -0.370 5.370 23 O 0.092 5.908 24 H 0.030 0.970 25 H 0.035 0.965 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.041 0.959 31 H 0.051 0.949 32 H 0.027 0.973 33 H -0.003 1.003 34 H 0.030 0.970 35 H 0.261 0.739 36 H 0.047 0.953 37 H 0.104 0.896 38 H 0.168 0.832 39 H 0.118 0.882 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.312 4.730 11.113 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.123 4.123 3 C -0.202 4.202 4 C -0.057 4.057 5 N -0.253 5.253 6 C 0.069 3.931 7 C -0.543 4.543 8 H 0.096 0.904 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.721 3.279 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.202 1.202 15 C 0.000 4.000 16 C -0.063 4.063 17 C -0.242 4.242 18 C -0.115 4.115 19 C -0.102 4.102 20 C -0.201 4.201 21 C -0.202 4.202 22 N -0.075 5.075 23 O 0.027 5.973 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.093 0.907 27 H 0.131 0.869 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.015 0.985 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.122 0.878 38 H 0.186 0.814 39 H 0.136 0.864 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.457 5.665 11.653 15.473 hybrid contribution 0.241 -0.566 -1.090 1.252 sum -8.216 5.099 10.563 14.320 Atomic orbital electron populations 1.21643 0.95737 1.02488 0.98684 1.21418 0.96000 0.94047 1.00862 1.21834 1.00462 0.97386 1.00512 1.22052 0.96644 0.89366 0.97592 1.62208 1.58428 1.02301 1.02348 1.19835 0.91328 0.92432 0.89520 1.21334 1.19355 1.22851 0.90783 0.90424 1.24984 0.95211 0.95210 0.99168 1.69939 1.26935 1.26131 1.30848 0.86638 0.79285 0.78196 0.83815 1.20189 1.21463 1.20193 1.20633 0.94073 0.97398 0.87876 1.24659 0.97069 0.89242 0.95371 1.22249 0.94978 1.04223 1.02706 1.22558 0.95592 0.94369 0.98954 1.20039 0.84508 1.07573 0.98107 1.23033 0.99291 0.94669 1.03062 1.23014 1.00255 0.94776 1.02189 1.73758 0.95826 1.21927 1.16003 1.84815 1.32208 1.37886 1.42388 0.95080 0.94550 0.90748 0.86934 0.93330 0.93248 0.93942 0.93053 0.95500 0.98520 0.95171 0.92911 0.93510 0.87764 0.81414 0.86382 0.87957 0.88052 0.88197 0.88378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 8.40 37.16 0.31 -2.01 16 2 C -0.10 -1.97 2.40 -90.62 -0.22 -2.19 16 3 C -0.14 -2.31 9.19 37.16 0.34 -1.97 16 4 C 0.07 1.35 4.27 -3.82 -0.02 1.34 16 5 N -0.53 -10.42 3.70 -237.52 -0.88 -11.30 16 6 C 0.19 4.59 4.79 -4.98 -0.02 4.57 16 7 C -0.50 -13.00 7.24 -34.44 -0.25 -13.25 16 8 H 0.08 1.95 4.58 -52.48 -0.24 1.71 16 9 C 0.06 1.49 5.46 -17.82 -0.10 1.39 16 10 N -0.90 -25.46 13.29 55.43 0.74 -24.73 16 11 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 15 C 0.13 2.16 5.49 -4.98 -0.03 2.13 16 16 C 0.00 0.01 6.07 -35.30 -0.21 -0.21 16 17 C -0.22 -3.24 10.40 -39.38 -0.41 -3.65 16 18 C 0.04 0.64 6.95 -82.10 -0.57 0.07 16 19 C -0.08 -0.96 6.33 -91.77 -0.58 -1.54 16 20 C -0.16 -1.53 10.05 -26.70 -0.27 -1.80 16 21 C -0.16 -1.67 10.24 -26.70 -0.27 -1.94 16 22 N -0.37 -6.18 12.07 33.42 0.40 -5.78 16 23 O 0.09 1.55 10.23 17.18 0.18 1.73 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 1.48 6.74 -51.92 -0.35 1.13 16 27 H 0.11 2.47 5.14 -51.93 -0.27 2.20 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.94 6.15 -51.93 -0.32 0.62 16 32 H 0.03 0.52 7.74 -51.93 -0.40 0.12 16 33 H 0.00 -0.08 7.67 -51.93 -0.40 -0.48 16 34 H 0.03 0.76 7.65 -51.93 -0.40 0.36 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 37 H 0.10 1.64 7.80 -51.93 -0.41 1.23 16 38 H 0.17 2.19 7.62 -52.49 -0.40 1.79 16 39 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.10 1.00 7.34 -51.93 -0.38 0.62 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 345.56 15.07 5.21 5.21 Total: -1.00 -28.05 345.56 -8.59 -36.64 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -6.92 Total: 1.44 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -2.29 Total: -19.03 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.26 Total: -41.80 kcal Atomic # 8 Polarization: 1.55 SS G_CDS: 0.18 Total: 1.73 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.05 -8.59 -36.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851779054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.099 kcal (2) G-P(sol) polarization free energy of solvation -28.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds