Wall clock time and date at job start Tue Mar 31 2020 00:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47103 * 2 1 4 4 C 1.53007 * 109.46856 * 119.99817 * 2 1 3 5 5 N 1.46893 * 109.46973 * 60.95830 * 4 2 1 6 6 C 1.46896 * 111.00536 * 73.48969 * 5 4 2 7 7 C 1.50698 * 109.47332 * 279.60557 * 6 5 4 8 8 H 1.08003 * 119.99759 * 2.96902 * 7 6 5 9 9 C 1.37880 * 120.00108 * 182.96604 * 7 6 5 10 10 N 1.31506 * 120.00013 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99748 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47467 * 60.00089 * 11 9 7 13 13 H 1.48498 * 109.47171 * 180.02562 * 11 9 7 14 14 H 1.48501 * 109.47255 * 299.99854 * 11 9 7 15 15 C 1.46906 * 110.99727 * 197.44347 * 5 4 2 16 16 C 1.50695 * 109.47089 * 66.04469 * 15 5 4 17 17 C 1.35458 * 126.77557 * 89.98554 * 16 15 5 18 18 C 1.41380 * 103.98337 * 180.02562 * 17 16 15 19 19 C 1.50700 * 126.79773 * 179.97438 * 18 17 16 20 20 C 1.52998 * 117.50257 * 343.74233 * 19 18 17 21 21 C 1.52999 * 117.49837 * 275.08342 * 19 18 17 22 22 N 1.30169 * 106.39958 * 359.97438 * 18 17 16 23 23 O 1.20928 * 111.60407 * 359.97438 * 22 18 17 24 24 H 1.09002 * 109.47398 * 299.99939 * 1 2 3 25 25 H 1.09005 * 109.47044 * 60.00552 * 1 2 3 26 26 H 1.09007 * 109.47232 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47235 * 239.99906 * 2 1 3 28 28 H 1.09006 * 109.47298 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47346 * 299.99944 * 3 2 1 30 30 H 1.09002 * 109.46944 * 59.99782 * 3 2 1 31 31 H 1.08997 * 109.47174 * 300.95484 * 4 2 1 32 32 H 1.09002 * 109.46985 * 180.95437 * 4 2 1 33 33 H 1.09006 * 109.46811 * 39.60104 * 6 5 4 34 34 H 1.09004 * 109.47655 * 159.60037 * 6 5 4 35 35 H 0.97003 * 119.99818 * 180.02562 * 10 9 7 36 36 H 1.09000 * 109.46928 * 306.04505 * 15 5 4 37 37 H 1.09003 * 109.46801 * 186.04442 * 15 5 4 38 38 H 1.07998 * 128.00909 * 0.06340 * 17 16 15 39 39 H 1.08998 * 115.54972 * 129.41821 * 19 18 17 40 40 H 1.08993 * 117.49731 * 0.02562 * 20 19 18 41 41 H 1.09001 * 117.49554 * 145.01902 * 20 19 18 42 42 H 1.09002 * 117.50003 * 214.98225 * 21 19 18 43 43 H 1.08999 * 117.49969 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.5692 -2.1127 1.2378 6 6 2.3024 -2.9083 0.2442 7 6 1.7248 -2.6581 -1.1251 8 1 0.9279 -1.9403 -1.2520 9 6 2.2138 -3.3454 -2.2157 10 7 3.1839 -4.2197 -2.0611 11 14 1.4983 -3.0346 -3.9130 12 1 1.6856 -1.6067 -4.2754 13 1 2.1912 -3.8930 -4.9071 14 1 0.0489 -3.3574 -3.9059 15 6 1.6724 -2.7144 2.5740 16 6 0.7186 -2.0209 3.5122 17 6 -0.5699 -2.3605 3.7557 18 6 -1.0038 -1.4006 4.6986 19 6 -2.3718 -1.3031 5.3234 20 6 -3.5114 -2.0722 4.6523 21 6 -3.4509 -0.5464 4.5465 22 7 0.0122 -0.6177 4.9202 23 8 0.9779 -0.9469 4.2710 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6627 -0.2174 2.1392 32 1 3.1298 -0.7065 1.2580 33 1 3.3539 -2.6212 0.2530 34 1 2.2128 -3.9669 0.4884 35 1 3.5281 -4.7030 -2.8285 36 1 2.6915 -2.6036 2.9446 37 1 1.4199 -3.7732 2.5161 38 1 -1.1348 -3.1761 3.3289 39 1 -2.3877 -1.2271 6.4106 40 1 -3.2718 -2.6490 3.7591 41 1 -4.2773 -2.5020 5.2980 42 1 -4.1771 0.0271 5.1227 43 1 -3.1714 -0.1187 3.5837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851779054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:30 Heat of formation + Delta-G solvation = 67.364817 kcal Electronic energy + Delta-G solvation = -22380.381121 eV Core-core repulsion = 19236.091121 eV Total energy + Delta-G solvation = -3144.290000 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.87074 -39.27533 -38.44623 -35.57371 -34.80316 -34.13156 -32.78413 -29.38046 -27.86111 -27.83560 -25.64880 -25.52391 -23.72107 -22.95924 -22.66975 -20.65613 -20.58464 -18.67070 -18.56260 -17.89511 -16.79679 -16.75814 -16.45190 -15.66959 -15.60169 -15.40492 -14.98634 -14.59143 -14.15509 -14.04013 -13.82834 -13.47329 -13.20595 -13.02164 -12.89139 -12.71877 -12.66571 -12.43636 -12.36701 -12.35204 -12.01297 -11.88444 -11.68871 -11.52236 -11.32592 -11.30936 -10.94559 -10.64278 -10.47782 -10.33417 -9.06631 -8.10369 -6.14670 0.47087 1.25984 1.46563 1.47199 1.54472 2.10771 2.46728 2.75785 3.16159 3.21091 3.35077 3.56387 3.88844 4.01953 4.07615 4.12735 4.17748 4.24689 4.38710 4.43937 4.49205 4.63246 4.70002 4.73502 4.77006 4.82005 4.88914 4.97325 5.01808 5.10006 5.12037 5.15356 5.16362 5.20755 5.25124 5.29011 5.40203 5.62289 5.75838 5.86594 6.13541 6.35423 6.57830 6.98459 7.29090 7.51324 8.99935 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018803 B = 0.004735 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.796946 B = 5912.198702 C = 6021.957055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.106 4.106 3 C -0.138 4.138 4 C 0.076 3.924 5 N -0.528 5.528 6 C 0.208 3.792 7 C -0.505 4.505 8 H 0.083 0.917 9 C 0.004 3.996 10 N -0.936 5.936 11 Si 0.952 3.048 12 H -0.269 1.269 13 H -0.290 1.290 14 H -0.270 1.270 15 C 0.131 3.869 16 C -0.009 4.009 17 C -0.215 4.215 18 C 0.050 3.950 19 C -0.105 4.105 20 C -0.147 4.147 21 C -0.162 4.162 22 N -0.391 5.391 23 O 0.075 5.925 24 H 0.039 0.961 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.017 0.983 33 H -0.030 1.030 34 H 0.013 0.987 35 H 0.260 0.740 36 H 0.052 0.948 37 H 0.113 0.887 38 H 0.185 0.815 39 H 0.131 0.869 40 H 0.097 0.903 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.459 5.583 11.562 16.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.125 4.125 3 C -0.196 4.196 4 C -0.052 4.052 5 N -0.253 5.253 6 C 0.083 3.917 7 C -0.543 4.543 8 H 0.101 0.899 9 C -0.193 4.193 10 N -0.577 5.577 11 Si 0.778 3.222 12 H -0.195 1.195 13 H -0.216 1.216 14 H -0.195 1.195 15 C 0.002 3.998 16 C -0.073 4.073 17 C -0.237 4.237 18 C -0.109 4.109 19 C -0.123 4.123 20 C -0.184 4.184 21 C -0.200 4.200 22 N -0.099 5.099 23 O 0.013 5.987 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.035 0.965 33 H -0.013 1.013 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.131 0.869 38 H 0.202 0.798 39 H 0.149 0.851 40 H 0.116 0.884 41 H 0.146 0.854 42 H 0.140 0.860 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.601 6.529 12.106 17.366 hybrid contribution 0.873 -0.813 -1.136 1.647 sum -9.728 5.717 10.971 15.737 Atomic orbital electron populations 1.21523 0.95011 1.01370 0.99673 1.21355 0.96579 0.95481 0.99069 1.21767 1.00576 0.95521 1.01724 1.22042 0.96052 0.88921 0.98222 1.62111 1.57462 1.02417 1.03329 1.19490 0.90059 0.91856 0.90300 1.21669 1.18884 1.22143 0.91624 0.89926 1.25748 0.95636 0.95194 1.02768 1.70064 1.28524 1.27460 1.31689 0.85686 0.78696 0.78209 0.79594 1.19450 1.21582 1.19483 1.20615 0.94861 0.97846 0.86500 1.24481 0.97399 0.89652 0.95761 1.22536 0.94478 1.04401 1.02264 1.23089 0.96462 0.93248 0.98108 1.20249 0.83304 1.09949 0.98827 1.23152 0.98343 0.94140 1.02793 1.23082 0.99811 0.95730 1.01400 1.73756 0.96423 1.22904 1.16839 1.84788 1.32692 1.38290 1.42890 0.94207 0.93353 0.92850 0.90191 0.93191 0.92039 0.92683 0.92065 0.96503 1.01276 0.96911 0.93098 0.92973 0.86901 0.79771 0.85149 0.88446 0.85426 0.85957 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.13 8.40 71.98 0.60 -3.53 16 2 C -0.11 -3.92 2.40 -10.79 -0.03 -3.95 16 3 C -0.14 -4.21 9.19 71.98 0.66 -3.55 16 4 C 0.08 2.86 4.27 86.31 0.37 3.23 16 5 N -0.53 -21.06 3.70 -905.36 -3.35 -24.41 16 6 C 0.21 10.19 4.79 85.56 0.41 10.60 16 7 C -0.50 -26.32 7.24 25.60 0.19 -26.13 16 8 H 0.08 4.17 4.58 -2.91 -0.01 4.15 16 9 C 0.00 0.22 5.46 84.66 0.46 0.68 16 10 N -0.94 -54.11 13.29 21.45 0.28 -53.82 16 11 Si 0.95 42.80 29.54 68.60 2.03 44.83 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 13 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 14 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 15 C 0.13 4.36 5.49 85.55 0.47 4.83 16 16 C -0.01 -0.29 6.07 25.04 0.15 -0.14 16 17 C -0.21 -6.06 10.40 22.40 0.23 -5.83 16 18 C 0.05 1.39 6.95 43.58 0.30 1.69 16 19 C -0.10 -2.15 6.33 -11.54 -0.07 -2.23 16 20 C -0.15 -2.30 10.05 30.62 0.31 -2.00 16 21 C -0.16 -2.87 10.24 30.62 0.31 -2.55 16 22 N -0.39 -12.74 12.07 -49.56 -0.60 -13.34 16 23 O 0.08 2.52 10.23 71.64 0.73 3.25 16 24 H 0.04 1.29 8.14 -2.39 -0.02 1.28 16 25 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.05 2.08 6.74 -2.38 -0.02 2.06 16 27 H 0.08 3.52 5.14 -2.39 -0.01 3.50 16 28 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 2.20 6.15 -2.39 -0.01 2.19 16 32 H 0.02 0.66 7.74 -2.39 -0.02 0.65 16 33 H -0.03 -1.64 7.67 -2.38 -0.02 -1.66 16 34 H 0.01 0.66 7.65 -2.39 -0.02 0.65 16 35 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 36 H 0.05 1.69 8.12 -2.39 -0.02 1.67 16 37 H 0.11 3.54 7.80 -2.39 -0.02 3.52 16 38 H 0.19 4.47 7.62 -2.91 -0.02 4.45 16 39 H 0.13 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.10 1.64 7.34 -2.39 -0.02 1.62 16 41 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -60.30 345.56 4.46 -55.85 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.99 Total: 16.52 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 4.37 Total: -28.87 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -3.66 Total: -91.57 kcal Atomic # 8 Polarization: 2.52 SS G_CDS: 0.73 Total: 3.25 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -60.30 4.46 -55.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851779054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.211 kcal (2) G-P(sol) polarization free energy of solvation -60.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds