Wall clock time and date at job start Tue Mar 31 2020 00:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.08995 * 109.47564 * 35.07766 * 3 2 1 5 5 C 1.52998 * 109.47298 * 275.07641 * 3 2 1 6 6 C 1.53005 * 109.47386 * 175.00365 * 5 3 2 7 7 C 1.52994 * 109.47074 * 180.02562 * 6 5 3 8 8 N 1.46503 * 109.47023 * 155.08054 * 3 2 1 9 9 C 1.34778 * 119.99594 * 275.00270 * 8 3 2 10 10 O 1.21586 * 120.00270 * 355.00256 * 9 8 3 11 11 N 1.34776 * 119.99768 * 175.01212 * 9 8 3 12 12 C 1.46919 * 120.63182 * 4.93710 * 11 9 8 13 13 C 1.53633 * 108.54635 * 126.37164 * 12 11 9 14 14 C 1.53038 * 109.23816 * 54.85177 * 13 12 11 15 15 C 1.53038 * 109.54367 * 298.51207 * 14 13 12 16 16 H 1.08991 * 109.49893 * 301.41880 * 15 14 13 17 17 C 1.50695 * 109.52591 * 181.33380 * 15 14 13 18 18 H 1.08004 * 120.00231 * 0.14602 * 17 15 14 19 19 C 1.37879 * 119.99907 * 180.14702 * 17 15 14 20 20 N 1.31506 * 120.00203 * 0.02562 * 19 17 15 21 21 Si 1.86807 * 119.99947 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.46864 * 90.00053 * 21 19 17 23 23 H 1.48493 * 109.47299 * 210.00196 * 21 19 17 24 24 H 1.48503 * 109.47032 * 330.00348 * 21 19 17 25 25 C 1.46926 * 120.62909 * 185.21624 * 11 9 8 26 26 H 4.18741 * 15.03940 * 0.02562 * 4 2 1 27 27 H 1.09002 * 109.47437 * 55.00424 * 5 3 2 28 28 H 1.09007 * 109.47238 * 295.00403 * 5 3 2 29 29 H 1.09002 * 109.46784 * 59.99660 * 6 5 3 30 30 H 1.08997 * 109.46958 * 300.00209 * 6 5 3 31 31 H 1.09007 * 109.47296 * 299.99883 * 7 6 5 32 32 H 1.09004 * 109.47087 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.47690 * 60.00095 * 7 6 5 34 34 H 0.96996 * 120.00151 * 94.99679 * 8 3 2 35 35 H 1.09002 * 109.58987 * 246.19896 * 12 11 9 36 36 H 1.09003 * 109.58997 * 6.63112 * 12 11 9 37 37 H 1.09004 * 109.63211 * 294.86776 * 13 12 11 38 38 H 1.08997 * 109.43269 * 174.72552 * 13 12 11 39 39 H 1.09000 * 109.45626 * 178.49177 * 14 13 12 40 40 H 1.09002 * 109.44641 * 58.53241 * 14 13 12 41 41 H 0.97000 * 120.00535 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.59049 * 353.37380 * 25 11 9 43 43 H 1.09002 * 109.58735 * 113.79848 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -0.8401 -0.5905 5 6 3.1561 -0.1267 1.4368 6 6 4.6810 -0.2514 1.4275 7 6 5.1910 -0.3794 2.8643 8 7 3.1338 1.2535 -0.5820 9 6 3.2623 1.3706 -1.9185 10 8 3.0610 0.4092 -2.6351 11 7 3.6143 2.5532 -2.4606 12 6 3.9658 3.6942 -1.6044 13 6 5.3453 4.2188 -2.0312 14 6 5.3218 4.5398 -3.5273 15 6 5.0254 3.2647 -4.3200 16 1 5.7858 2.5152 -4.1010 17 6 5.0348 3.5747 -5.7947 18 1 5.2347 4.5804 -6.1338 19 6 4.7880 2.5744 -6.7110 20 7 4.5440 1.3500 -6.2981 21 14 4.7990 2.9589 -8.5390 22 1 6.1706 2.7714 -9.0760 23 1 3.8628 2.0458 -9.2425 24 1 4.3721 4.3653 -8.7516 25 6 3.6478 2.7278 -3.9191 26 1 -1.0500 -0.0004 -0.0009 27 1 2.7220 -1.0132 1.8993 28 1 2.8673 0.7577 2.0047 29 1 5.1152 0.6351 0.9651 30 1 4.9698 -1.1358 0.8597 31 1 4.9022 0.5048 3.4326 32 1 6.2774 -0.4677 2.8577 33 1 4.7568 -1.2660 3.3264 34 1 3.3641 1.9988 -0.0055 35 1 3.2207 4.4813 -1.7203 36 1 4.0017 3.3726 -0.5635 37 1 6.1027 3.4601 -1.8338 38 1 5.5795 5.1225 -1.4687 39 1 6.2909 4.9376 -3.8285 40 1 4.5473 5.2802 -3.7275 41 1 4.3701 0.6463 -6.9427 42 1 3.4737 1.7683 -4.4061 43 1 2.8773 3.4377 -4.2199 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852274641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:01 Heat of formation + Delta-G solvation = 11.492746 kcal Electronic energy + Delta-G solvation = -22248.631943 eV Core-core repulsion = 19101.919148 eV Total energy + Delta-G solvation = -3146.712795 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.83933 -37.45319 -36.12321 -33.65361 -33.29046 -32.24384 -31.51504 -29.73004 -28.68218 -25.06953 -24.73079 -23.69836 -21.80322 -21.21014 -20.22864 -18.85699 -18.31933 -17.36368 -16.24967 -16.06967 -15.09047 -14.92211 -14.62715 -14.27846 -13.97190 -13.77683 -13.66497 -13.36788 -12.75788 -12.64214 -12.44300 -12.21349 -12.03696 -11.88979 -11.65862 -11.20048 -10.96069 -10.90867 -10.80723 -10.50376 -10.46847 -10.33501 -10.19634 -10.02126 -9.84014 -9.39564 -9.06429 -8.94183 -8.89481 -8.38056 -7.62044 -5.94334 -4.03740 2.64900 2.94151 3.33487 3.41061 3.43275 3.53415 3.83472 4.35973 4.42652 4.50410 4.83343 4.85708 4.97306 5.27921 5.31835 5.35265 5.42514 5.50531 5.58440 5.63044 5.64710 5.84123 5.92934 5.98802 6.06731 6.07835 6.18517 6.20505 6.33758 6.61046 6.69540 6.79615 6.83194 7.02045 7.07517 7.38520 7.53085 7.72168 7.78218 7.96867 8.10322 8.44918 8.60857 8.99897 9.28012 9.61717 11.10481 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020491 B = 0.004537 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.146530 B = 6170.537308 C = 6683.928409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.188 4.188 3 C 0.270 3.730 4 H 0.110 0.890 5 C -0.118 4.118 6 C -0.126 4.126 7 C -0.151 4.151 8 N -0.747 5.747 9 C 0.701 3.299 10 O -0.578 6.578 11 N -0.622 5.622 12 C 0.115 3.885 13 C -0.132 4.132 14 C -0.110 4.110 15 C 0.040 3.960 16 H 0.029 0.971 17 C -0.522 4.522 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.878 5.878 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.129 3.871 26 H 0.215 0.785 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.392 0.608 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.263 0.737 42 H 0.123 0.877 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.361 0.370 17.878 18.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.190 4.190 3 C 0.164 3.836 4 H 0.127 0.873 5 C -0.156 4.156 6 C -0.163 4.163 7 C -0.208 4.208 8 N -0.406 5.406 9 C 0.403 3.597 10 O -0.455 6.455 11 N -0.358 5.358 12 C -0.009 4.009 13 C -0.171 4.171 14 C -0.147 4.147 15 C 0.020 3.980 16 H 0.047 0.953 17 C -0.561 4.561 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.515 5.515 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C 0.008 3.992 26 H 0.231 0.769 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.229 0.771 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.141 0.859 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.538 -0.519 17.229 17.423 hybrid contribution -0.193 0.635 -0.732 0.988 sum -2.731 0.116 16.497 16.722 Atomic orbital electron populations 1.24876 0.95861 0.99981 1.01262 1.23736 0.94940 1.00555 0.99759 1.17598 0.82700 0.88699 0.94600 0.87270 1.21846 0.96355 1.03131 0.94235 1.21536 0.94472 1.03062 0.97264 1.21764 1.01003 1.01569 0.96479 1.45391 1.72591 1.16401 1.06217 1.15970 0.78339 0.83959 0.81476 1.90934 1.57658 1.37071 1.59802 1.47782 1.70122 1.08751 1.09153 1.21582 0.96985 0.89481 0.92855 1.22019 0.96265 0.99953 0.98848 1.21613 1.00476 1.00227 0.92427 1.18977 0.93144 0.91752 0.94083 0.95319 1.21073 1.49362 0.95330 0.90314 0.92425 1.25056 0.94960 0.95070 0.98914 1.69897 1.46867 1.00636 1.34118 0.86614 0.77831 0.78164 0.85510 1.20713 1.21206 1.19938 1.22188 0.98760 1.04687 0.73561 0.76852 0.90167 0.91238 0.91392 0.91428 0.92842 0.92631 0.92813 0.77135 0.92188 0.92194 0.92135 0.92395 0.93086 0.93242 0.92675 0.85874 0.94341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.67 19.25 29.55 0.57 -2.11 16 2 C -0.19 -2.78 12.84 -37.12 -0.48 -3.26 16 3 C 0.27 3.77 2.46 -70.72 -0.17 3.59 16 4 H 0.11 1.75 7.51 -51.93 -0.39 1.36 16 5 C -0.12 -1.15 4.71 -26.73 -0.13 -1.28 16 6 C -0.13 -1.21 5.82 -26.73 -0.16 -1.36 16 7 C -0.15 -1.17 9.91 37.15 0.37 -0.80 16 8 N -0.75 -11.48 4.40 -61.45 -0.27 -11.75 16 9 C 0.70 14.65 8.24 -86.92 -0.72 13.93 16 10 O -0.58 -14.88 15.39 5.29 0.08 -14.80 16 11 N -0.62 -12.77 2.97 -178.23 -0.53 -13.30 16 12 C 0.12 1.80 6.42 -3.49 -0.02 1.78 16 13 C -0.13 -2.12 6.10 -26.38 -0.16 -2.29 16 14 C -0.11 -2.19 5.11 -26.69 -0.14 -2.33 16 15 C 0.04 0.99 2.25 -91.65 -0.21 0.79 16 16 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 17 C -0.52 -14.30 8.57 -34.44 -0.30 -14.60 16 18 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 20 N -0.88 -26.04 11.39 55.43 0.63 -25.41 16 21 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.13 3.19 5.41 -3.71 -0.02 3.17 16 26 H 0.21 2.03 7.80 -54.09 -0.42 1.61 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.71 7.75 -51.93 -0.40 0.31 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.39 4.89 6.09 -40.82 -0.25 4.64 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.73 5.64 -51.93 -0.29 0.44 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.12 3.59 5.11 -51.93 -0.27 3.33 16 43 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 349.19 15.07 5.26 5.26 Total: -1.00 -32.91 349.19 -8.55 -41.46 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -7.06 Total: 5.17 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -1.65 Total: -3.09 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.17 Total: -50.45 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.08 Total: -14.80 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.91 -8.55 -41.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852274641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.952 kcal (2) G-P(sol) polarization free energy of solvation -32.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds