Wall clock time and date at job start Tue Mar 31 2020 00:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.08995 * 109.47564 * 35.07766 * 3 2 1 5 5 C 1.52998 * 109.47298 * 275.07641 * 3 2 1 6 6 C 1.53005 * 109.47386 * 175.00365 * 5 3 2 7 7 C 1.52994 * 109.47074 * 180.02562 * 6 5 3 8 8 N 1.46503 * 109.47023 * 155.08054 * 3 2 1 9 9 C 1.34778 * 119.99594 * 275.00270 * 8 3 2 10 10 O 1.21586 * 120.00270 * 355.00256 * 9 8 3 11 11 N 1.34776 * 119.99768 * 175.01212 * 9 8 3 12 12 C 1.46919 * 120.63182 * 4.93710 * 11 9 8 13 13 C 1.53633 * 108.54635 * 126.37164 * 12 11 9 14 14 C 1.53038 * 109.23816 * 54.85177 * 13 12 11 15 15 C 1.53038 * 109.54367 * 298.51207 * 14 13 12 16 16 H 1.08991 * 109.49893 * 301.41880 * 15 14 13 17 17 C 1.50695 * 109.52591 * 181.33380 * 15 14 13 18 18 H 1.08004 * 120.00231 * 0.14602 * 17 15 14 19 19 C 1.37879 * 119.99907 * 180.14702 * 17 15 14 20 20 N 1.31506 * 120.00203 * 0.02562 * 19 17 15 21 21 Si 1.86807 * 119.99947 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.46864 * 90.00053 * 21 19 17 23 23 H 1.48493 * 109.47299 * 210.00196 * 21 19 17 24 24 H 1.48503 * 109.47032 * 330.00348 * 21 19 17 25 25 C 1.46926 * 120.62909 * 185.21624 * 11 9 8 26 26 H 4.18741 * 15.03940 * 0.02562 * 4 2 1 27 27 H 1.09002 * 109.47437 * 55.00424 * 5 3 2 28 28 H 1.09007 * 109.47238 * 295.00403 * 5 3 2 29 29 H 1.09002 * 109.46784 * 59.99660 * 6 5 3 30 30 H 1.08997 * 109.46958 * 300.00209 * 6 5 3 31 31 H 1.09007 * 109.47296 * 299.99883 * 7 6 5 32 32 H 1.09004 * 109.47087 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.47690 * 60.00095 * 7 6 5 34 34 H 0.96996 * 120.00151 * 94.99679 * 8 3 2 35 35 H 1.09002 * 109.58987 * 246.19896 * 12 11 9 36 36 H 1.09003 * 109.58997 * 6.63112 * 12 11 9 37 37 H 1.09004 * 109.63211 * 294.86776 * 13 12 11 38 38 H 1.08997 * 109.43269 * 174.72552 * 13 12 11 39 39 H 1.09000 * 109.45626 * 178.49177 * 14 13 12 40 40 H 1.09002 * 109.44641 * 58.53241 * 14 13 12 41 41 H 0.97000 * 120.00535 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.59049 * 353.37380 * 25 11 9 43 43 H 1.09002 * 109.58735 * 113.79848 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -0.8401 -0.5905 5 6 3.1561 -0.1267 1.4368 6 6 4.6810 -0.2514 1.4275 7 6 5.1910 -0.3794 2.8643 8 7 3.1338 1.2535 -0.5820 9 6 3.2623 1.3706 -1.9185 10 8 3.0610 0.4092 -2.6351 11 7 3.6143 2.5532 -2.4606 12 6 3.9658 3.6942 -1.6044 13 6 5.3453 4.2188 -2.0312 14 6 5.3218 4.5398 -3.5273 15 6 5.0254 3.2647 -4.3200 16 1 5.7858 2.5152 -4.1010 17 6 5.0348 3.5747 -5.7947 18 1 5.2347 4.5804 -6.1338 19 6 4.7880 2.5744 -6.7110 20 7 4.5440 1.3500 -6.2981 21 14 4.7990 2.9589 -8.5390 22 1 6.1706 2.7714 -9.0760 23 1 3.8628 2.0458 -9.2425 24 1 4.3721 4.3653 -8.7516 25 6 3.6478 2.7278 -3.9191 26 1 -1.0500 -0.0004 -0.0009 27 1 2.7220 -1.0132 1.8993 28 1 2.8673 0.7577 2.0047 29 1 5.1152 0.6351 0.9651 30 1 4.9698 -1.1358 0.8597 31 1 4.9022 0.5048 3.4326 32 1 6.2774 -0.4677 2.8577 33 1 4.7568 -1.2660 3.3264 34 1 3.3641 1.9988 -0.0055 35 1 3.2207 4.4813 -1.7203 36 1 4.0017 3.3726 -0.5635 37 1 6.1027 3.4601 -1.8338 38 1 5.5795 5.1225 -1.4687 39 1 6.2909 4.9376 -3.8285 40 1 4.5473 5.2802 -3.7275 41 1 4.3701 0.6463 -6.9427 42 1 3.4737 1.7683 -4.4061 43 1 2.8773 3.4377 -4.2199 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852274641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:00 Heat of formation + Delta-G solvation = -8.721886 kcal Electronic energy + Delta-G solvation = -22249.508515 eV Core-core repulsion = 19101.919148 eV Total energy + Delta-G solvation = -3147.589367 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.39590 -38.87002 -37.54166 -35.39172 -34.45101 -33.75756 -32.98204 -31.47352 -29.72901 -27.02270 -26.12458 -24.87237 -23.44442 -22.05758 -21.85074 -20.45284 -19.53248 -18.86348 -18.17913 -17.46504 -16.67079 -16.37167 -15.94047 -15.65087 -15.23209 -15.15084 -15.11805 -14.67786 -14.46608 -14.22247 -13.86467 -13.53138 -13.39914 -12.88533 -12.85340 -12.66066 -12.52884 -12.26474 -12.22394 -11.97760 -11.88415 -11.63106 -11.56230 -11.51407 -11.18557 -11.06809 -10.94154 -10.81603 -10.50738 -10.37350 -9.29283 -8.08769 -6.26708 1.38932 1.41706 1.43640 1.52741 1.86551 2.13985 2.25836 2.42968 3.09841 3.20966 3.38512 3.92837 4.04004 4.05426 4.15325 4.20528 4.29711 4.46868 4.60029 4.67087 4.71722 4.80611 4.81518 4.86392 4.88780 5.00245 5.11244 5.13092 5.25878 5.27540 5.29148 5.30090 5.34668 5.49295 5.53148 5.57338 5.65608 5.89849 5.98456 6.16162 6.36810 6.65723 6.86852 7.12011 7.43442 7.67384 8.94201 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020491 B = 0.004537 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.146530 B = 6170.537308 C = 6683.928409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.234 4.234 3 C 0.267 3.733 4 H 0.078 0.922 5 C -0.103 4.103 6 C -0.126 4.126 7 C -0.146 4.146 8 N -0.723 5.723 9 C 0.695 3.305 10 O -0.637 6.637 11 N -0.627 5.627 12 C 0.109 3.891 13 C -0.124 4.124 14 C -0.105 4.105 15 C 0.038 3.962 16 H -0.015 1.015 17 C -0.537 4.537 18 H 0.063 0.937 19 C 0.009 3.991 20 N -0.915 5.915 21 Si 0.958 3.042 22 H -0.275 1.275 23 H -0.289 1.289 24 H -0.261 1.261 25 C 0.143 3.857 26 H 0.248 0.752 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.409 0.591 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.050 0.950 38 H 0.105 0.895 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.259 0.741 42 H 0.074 0.926 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.789 2.479 20.254 20.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.235 4.235 3 C 0.161 3.839 4 H 0.096 0.904 5 C -0.141 4.141 6 C -0.164 4.164 7 C -0.203 4.203 8 N -0.382 5.382 9 C 0.396 3.604 10 O -0.519 6.519 11 N -0.362 5.362 12 C -0.013 4.013 13 C -0.162 4.162 14 C -0.142 4.142 15 C 0.019 3.981 16 H 0.003 0.997 17 C -0.575 4.575 18 H 0.081 0.919 19 C -0.190 4.190 20 N -0.553 5.553 21 Si 0.783 3.217 22 H -0.201 1.201 23 H -0.215 1.215 24 H -0.185 1.185 25 C 0.020 3.980 26 H 0.264 0.736 27 H 0.112 0.888 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.249 0.751 35 H 0.097 0.903 36 H 0.118 0.882 37 H 0.069 0.931 38 H 0.123 0.877 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.949 1.644 19.683 19.971 hybrid contribution -0.093 -0.041 -1.443 1.447 sum -3.042 1.603 18.240 18.562 Atomic orbital electron populations 1.25761 0.96804 0.97979 0.99634 1.24051 0.95685 1.02393 1.01388 1.17742 0.82972 0.86735 0.96406 0.90427 1.21800 0.96178 1.04744 0.91360 1.21533 0.94426 1.01947 0.98492 1.21724 1.01020 1.02568 0.95002 1.45125 1.71313 1.17615 1.04130 1.16220 0.78001 0.83255 0.82880 1.90892 1.60098 1.39164 1.61698 1.47682 1.70154 1.10277 1.08106 1.21966 0.97190 0.88222 0.93918 1.21976 0.96222 1.01775 0.96269 1.21503 1.00665 0.97390 0.94678 1.18910 0.91889 0.93185 0.94119 0.99715 1.21533 1.48560 0.95446 0.91969 0.91896 1.25915 0.94673 0.94807 1.03634 1.70112 1.48239 1.01686 1.35313 0.85562 0.77872 0.78389 0.79895 1.20059 1.21462 1.18485 1.21577 0.98342 1.01756 0.76332 0.73585 0.88765 0.89133 0.92257 0.93030 0.91550 0.92604 0.92047 0.75080 0.90287 0.88174 0.93124 0.87656 0.92952 0.92433 0.93238 0.90730 0.94869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.56 19.25 74.32 1.43 -3.13 16 2 C -0.23 -6.74 12.84 31.12 0.40 -6.34 16 3 C 0.27 7.43 2.46 43.18 0.11 7.54 16 4 H 0.08 2.66 7.51 -2.39 -0.02 2.64 16 5 C -0.10 -1.83 4.71 30.60 0.14 -1.69 16 6 C -0.13 -2.27 5.82 30.59 0.18 -2.10 16 7 C -0.15 -1.93 9.91 71.98 0.71 -1.22 16 8 N -0.72 -21.78 4.40 -466.58 -2.06 -23.83 16 9 C 0.69 29.82 8.24 179.05 1.48 31.30 16 10 O -0.64 -34.94 15.39 -3.99 -0.06 -35.00 16 11 N -0.63 -25.93 2.97 -836.05 -2.48 -28.41 16 12 C 0.11 3.10 6.42 86.51 0.56 3.65 16 13 C -0.12 -3.63 6.10 30.82 0.19 -3.44 16 14 C -0.10 -4.06 5.11 30.62 0.16 -3.90 16 15 C 0.04 1.98 2.25 -11.46 -0.03 1.95 16 16 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 17 C -0.54 -30.09 8.57 25.60 0.22 -29.87 16 18 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 19 C 0.01 0.52 5.30 84.66 0.45 0.97 16 20 N -0.91 -57.20 11.39 21.45 0.24 -56.96 16 21 Si 0.96 45.04 29.54 68.60 2.03 47.06 16 22 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 25 C 0.14 7.38 5.41 86.36 0.47 7.85 16 26 H 0.25 3.95 7.80 -4.42 -0.03 3.92 16 27 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.06 1.16 7.75 -2.39 -0.02 1.14 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.41 9.18 6.09 -92.71 -0.56 8.61 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.10 2.03 5.64 -2.39 -0.01 2.02 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 42 H 0.07 4.65 5.11 -2.39 -0.01 4.63 16 43 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -78.14 349.19 4.55 -73.59 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.41 Total: 21.97 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: 6.46 Total: 1.58 kcal Atomic # 7 Polarization: -104.92 SS G_CDS: -4.29 Total: -109.21 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -0.06 Total: -35.00 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -78.14 4.55 -73.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852274641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.868 kcal (2) G-P(sol) polarization free energy of solvation -78.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds