Wall clock time and date at job start Tue Mar 31 2020 00:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47730 * 32.22605 * 3 2 1 5 5 C 1.53007 * 109.47161 * 152.22143 * 3 2 1 6 6 C 1.53002 * 109.47241 * 184.99749 * 5 3 2 7 7 C 1.52993 * 109.46871 * 180.02562 * 6 5 3 8 8 N 1.46495 * 109.47291 * 272.22005 * 3 2 1 9 9 C 1.34783 * 119.99966 * 84.99834 * 8 3 2 10 10 O 1.21586 * 119.99902 * 5.08469 * 9 8 3 11 11 N 1.34776 * 120.00122 * 185.07769 * 9 8 3 12 12 C 1.46925 * 120.63037 * 354.94114 * 11 9 8 13 13 C 1.53192 * 108.77641 * 126.41599 * 12 11 9 14 14 C 1.53042 * 109.31082 * 54.63109 * 13 12 11 15 15 C 1.53040 * 109.54117 * 298.63777 * 14 13 12 16 16 H 1.08998 * 109.49397 * 301.41569 * 15 14 13 17 17 C 1.50695 * 109.49745 * 181.31766 * 15 14 13 18 18 H 1.08002 * 119.99803 * 0.15835 * 17 15 14 19 19 C 1.37875 * 120.00179 * 180.16314 * 17 15 14 20 20 N 1.31510 * 120.00305 * 179.97438 * 19 17 15 21 21 Si 1.86806 * 119.99824 * 359.97438 * 19 17 15 22 22 H 1.48502 * 109.46960 * 89.99777 * 21 19 17 23 23 H 1.48497 * 109.47174 * 210.00190 * 21 19 17 24 24 H 1.48500 * 109.46883 * 330.00064 * 21 19 17 25 25 C 1.46925 * 120.63026 * 174.96872 * 11 9 8 26 26 H 4.18746 * 15.03819 * 0.02562 * 4 2 1 27 27 H 1.09002 * 109.46976 * 305.00108 * 5 3 2 28 28 H 1.09004 * 109.46736 * 64.99973 * 5 3 2 29 29 H 1.08994 * 109.47150 * 300.00289 * 6 5 3 30 30 H 1.08995 * 109.46866 * 60.00241 * 6 5 3 31 31 H 1.09003 * 109.46953 * 180.02562 * 7 6 5 32 32 H 1.09007 * 109.47531 * 300.00359 * 7 6 5 33 33 H 1.08999 * 109.47677 * 60.00216 * 7 6 5 34 34 H 0.97008 * 120.00311 * 265.00113 * 8 3 2 35 35 H 1.09002 * 109.58762 * 246.20335 * 12 11 9 36 36 H 1.08999 * 109.59027 * 6.62767 * 12 11 9 37 37 H 1.08995 * 109.49924 * 174.59098 * 13 12 11 38 38 H 1.09005 * 109.49589 * 294.68653 * 13 12 11 39 39 H 1.08998 * 109.45513 * 58.66330 * 14 13 12 40 40 H 1.09004 * 109.45353 * 178.61644 * 14 13 12 41 41 H 0.96998 * 120.00150 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.58490 * 353.37198 * 25 11 9 43 43 H 1.09000 * 109.58780 * 113.79926 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0098 -0.8685 -0.5480 5 6 3.1554 1.2772 -0.6723 6 6 4.6803 1.2210 -0.7844 7 6 5.1897 2.4977 -1.4560 8 7 3.1343 -0.0526 1.3801 9 6 3.2636 -1.2404 2.0039 10 8 3.0638 -2.2727 1.3932 11 7 3.6143 -1.2840 3.3044 12 6 3.9665 -0.0538 4.0264 13 6 3.1054 0.0401 5.2899 14 6 3.2711 -1.2403 6.1116 15 6 2.7947 -2.4407 5.2905 16 1 1.7513 -2.2982 5.0095 17 6 2.9280 -3.6969 6.1122 18 1 3.3115 -3.6444 7.1204 19 6 2.5605 -4.9131 5.5768 20 7 2.6773 -6.0095 6.2937 21 14 1.8966 -5.0037 3.8330 22 1 3.0215 -5.2068 2.8851 23 1 0.9459 -6.1392 3.7237 24 1 1.1948 -3.7370 3.5042 25 6 3.6524 -2.5627 4.0271 26 1 -1.0500 -0.0005 -0.0009 27 1 2.7207 1.3616 -1.6683 28 1 2.8666 2.1423 -0.0753 29 1 5.1149 1.1365 0.2116 30 1 4.9690 0.3559 -1.3813 31 1 6.2760 2.4574 -1.5363 32 1 4.7550 2.5826 -2.4521 33 1 4.9009 3.3626 -0.8588 34 1 3.3647 0.7670 1.8451 35 1 5.0203 -0.0817 4.3037 36 1 3.7769 0.8105 3.3899 37 1 3.4229 0.8972 5.8837 38 1 2.0589 0.1592 5.0089 39 1 4.3215 -1.3717 6.3713 40 1 2.6784 -1.1657 7.0234 41 1 2.4184 -6.8651 5.9171 42 1 3.2555 -3.3538 3.3909 43 1 4.6806 -2.7952 4.3044 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852274655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:04 Heat of formation + Delta-G solvation = 18.600924 kcal Electronic energy + Delta-G solvation = -22428.219121 eV Core-core repulsion = 19281.814560 eV Total energy + Delta-G solvation = -3146.404561 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.16810 -37.72996 -36.39116 -33.84125 -33.38117 -32.36568 -31.74405 -30.46473 -28.87067 -25.20943 -24.99039 -23.85196 -22.04004 -21.36424 -20.32317 -19.05637 -18.46778 -17.68035 -16.71202 -16.35450 -15.27337 -15.16189 -14.87827 -14.33085 -14.12182 -14.00756 -13.85970 -13.64554 -13.02051 -12.83936 -12.72163 -12.47559 -12.19065 -12.15090 -11.81918 -11.35236 -11.31453 -11.04355 -10.94597 -10.64221 -10.52537 -10.38172 -10.13978 -10.06935 -9.78330 -9.67977 -9.22381 -9.17173 -9.06772 -8.56327 -7.97302 -6.07983 -4.09496 2.48165 2.84479 3.29455 3.42326 3.50708 3.53431 3.63145 4.16267 4.25429 4.46063 4.69626 4.71668 4.84778 5.08864 5.18578 5.24843 5.28129 5.33525 5.42440 5.46869 5.51163 5.68722 5.79022 5.80721 5.92215 5.97206 5.99788 6.05975 6.11139 6.17996 6.41231 6.54171 6.59419 6.61825 6.74524 6.88897 7.13070 7.32327 7.47572 7.63034 7.75703 8.25945 8.50390 8.93092 8.95461 9.53998 11.03929 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020300 B = 0.005275 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.951833 B = 5306.627815 C = 5886.769883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.196 4.196 3 C 0.271 3.729 4 H 0.109 0.891 5 C -0.118 4.118 6 C -0.125 4.125 7 C -0.151 4.151 8 N -0.743 5.743 9 C 0.703 3.297 10 O -0.589 6.589 11 N -0.623 5.623 12 C 0.116 3.884 13 C -0.137 4.137 14 C -0.099 4.099 15 C 0.004 3.996 16 H 0.029 0.971 17 C -0.516 4.516 18 H 0.077 0.923 19 C 0.074 3.926 20 N -0.897 5.897 21 Si 0.880 3.120 22 H -0.272 1.272 23 H -0.296 1.296 24 H -0.265 1.265 25 C 0.120 3.880 26 H 0.216 0.784 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.395 0.605 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.265 0.735 42 H 0.079 0.921 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.446 19.145 -12.263 22.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.198 4.198 3 C 0.165 3.835 4 H 0.127 0.873 5 C -0.156 4.156 6 C -0.163 4.163 7 C -0.209 4.209 8 N -0.402 5.402 9 C 0.405 3.595 10 O -0.466 6.466 11 N -0.360 5.360 12 C -0.008 4.008 13 C -0.175 4.175 14 C -0.137 4.137 15 C -0.016 4.016 16 H 0.047 0.953 17 C -0.554 4.554 18 H 0.095 0.905 19 C -0.129 4.129 20 N -0.534 5.534 21 Si 0.710 3.290 22 H -0.198 1.198 23 H -0.224 1.224 24 H -0.190 1.190 25 C -0.001 4.001 26 H 0.233 0.767 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.232 0.768 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.310 18.162 -12.682 22.271 hybrid contribution -0.575 0.174 -0.647 0.883 sum 1.735 18.336 -13.329 22.735 Atomic orbital electron populations 1.24928 0.95921 1.01238 0.98982 1.23641 0.94900 1.00029 1.01195 1.17620 0.82859 0.99998 0.83006 0.87299 1.21858 0.96320 0.96101 1.01352 1.21533 0.94478 0.98565 1.01695 1.21765 1.00997 0.97525 1.00584 1.45350 1.72212 1.07981 1.14642 1.15953 0.78037 0.83669 0.81852 1.90906 1.58189 1.32416 1.65115 1.47670 1.70760 1.09548 1.07996 1.21561 0.99282 0.86070 0.93858 1.21993 0.99898 0.99399 0.96206 1.21423 1.01103 0.93139 0.98020 1.19507 0.95156 0.95140 0.91801 0.95255 1.20952 1.44033 0.89327 1.01106 0.90452 1.25030 0.94626 0.95736 0.97491 1.69889 1.47792 0.98539 1.37179 0.86979 0.79655 0.77645 0.84714 1.19817 1.22395 1.18970 1.22502 1.01233 0.82428 0.93980 0.76735 0.90003 0.91076 0.91491 0.91498 0.92614 0.92745 0.92741 0.76794 0.91457 0.91782 0.91702 0.92088 0.92469 0.92255 0.92523 0.90322 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.55 19.25 29.55 0.57 -1.98 16 2 C -0.20 -2.83 12.84 -37.12 -0.48 -3.31 16 3 C 0.27 3.51 2.46 -70.72 -0.17 3.34 16 4 H 0.11 1.59 7.51 -51.93 -0.39 1.20 16 5 C -0.12 -1.03 4.71 -26.73 -0.13 -1.16 16 6 C -0.13 -1.02 5.82 -26.73 -0.16 -1.18 16 7 C -0.15 -1.00 9.91 37.15 0.37 -0.63 16 8 N -0.74 -10.54 4.41 -61.44 -0.27 -10.81 16 9 C 0.70 13.70 8.24 -86.91 -0.72 12.98 16 10 O -0.59 -14.15 15.41 5.29 0.08 -14.07 16 11 N -0.62 -11.87 2.97 -178.50 -0.53 -12.40 16 12 C 0.12 1.62 6.43 -3.71 -0.02 1.60 16 13 C -0.14 -2.01 6.08 -26.61 -0.16 -2.17 16 14 C -0.10 -1.87 5.10 -26.69 -0.14 -2.01 16 15 C 0.00 0.09 1.84 -91.65 -0.17 -0.08 16 16 H 0.03 0.75 7.21 -51.93 -0.37 0.37 16 17 C -0.52 -14.49 9.14 -34.44 -0.31 -14.81 16 18 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 19 C 0.07 2.18 5.45 -17.82 -0.10 2.08 16 20 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 21 Si 0.88 23.95 24.32 -169.99 -4.13 19.82 16 22 H -0.27 -7.51 6.92 56.52 0.39 -7.11 16 23 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 24 H -0.26 -7.30 6.53 56.52 0.37 -6.93 16 25 C 0.12 2.76 5.09 -3.71 -0.02 2.74 16 26 H 0.22 2.08 7.80 -54.09 -0.42 1.66 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.58 7.75 -51.93 -0.40 0.18 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.39 4.40 6.06 -40.82 -0.25 4.15 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.68 5.57 -51.93 -0.29 0.39 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 42 H 0.08 2.06 2.35 -51.93 -0.12 1.94 16 43 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 LS Contribution 342.25 15.07 5.16 5.16 Total: -1.00 -34.95 342.25 -7.47 -42.43 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.92 Total: 1.49 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -1.63 Total: -4.58 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.03 Total: -50.23 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.08 Total: -14.07 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -4.13 Total: 19.82 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.95 -7.47 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852274655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.027 kcal (2) G-P(sol) polarization free energy of solvation -34.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds