Wall clock time and date at job start Tue Mar 31 2020 00:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47730 * 32.22605 * 3 2 1 5 5 C 1.53007 * 109.47161 * 152.22143 * 3 2 1 6 6 C 1.53002 * 109.47241 * 184.99749 * 5 3 2 7 7 C 1.52993 * 109.46871 * 180.02562 * 6 5 3 8 8 N 1.46495 * 109.47291 * 272.22005 * 3 2 1 9 9 C 1.34783 * 119.99966 * 84.99834 * 8 3 2 10 10 O 1.21586 * 119.99902 * 5.08469 * 9 8 3 11 11 N 1.34776 * 120.00122 * 185.07769 * 9 8 3 12 12 C 1.46925 * 120.63037 * 354.94114 * 11 9 8 13 13 C 1.53192 * 108.77641 * 126.41599 * 12 11 9 14 14 C 1.53042 * 109.31082 * 54.63109 * 13 12 11 15 15 C 1.53040 * 109.54117 * 298.63777 * 14 13 12 16 16 H 1.08998 * 109.49397 * 301.41569 * 15 14 13 17 17 C 1.50695 * 109.49745 * 181.31766 * 15 14 13 18 18 H 1.08002 * 119.99803 * 0.15835 * 17 15 14 19 19 C 1.37875 * 120.00179 * 180.16314 * 17 15 14 20 20 N 1.31510 * 120.00305 * 179.97438 * 19 17 15 21 21 Si 1.86806 * 119.99824 * 359.97438 * 19 17 15 22 22 H 1.48502 * 109.46960 * 89.99777 * 21 19 17 23 23 H 1.48497 * 109.47174 * 210.00190 * 21 19 17 24 24 H 1.48500 * 109.46883 * 330.00064 * 21 19 17 25 25 C 1.46925 * 120.63026 * 174.96872 * 11 9 8 26 26 H 4.18746 * 15.03819 * 0.02562 * 4 2 1 27 27 H 1.09002 * 109.46976 * 305.00108 * 5 3 2 28 28 H 1.09004 * 109.46736 * 64.99973 * 5 3 2 29 29 H 1.08994 * 109.47150 * 300.00289 * 6 5 3 30 30 H 1.08995 * 109.46866 * 60.00241 * 6 5 3 31 31 H 1.09003 * 109.46953 * 180.02562 * 7 6 5 32 32 H 1.09007 * 109.47531 * 300.00359 * 7 6 5 33 33 H 1.08999 * 109.47677 * 60.00216 * 7 6 5 34 34 H 0.97008 * 120.00311 * 265.00113 * 8 3 2 35 35 H 1.09002 * 109.58762 * 246.20335 * 12 11 9 36 36 H 1.08999 * 109.59027 * 6.62767 * 12 11 9 37 37 H 1.08995 * 109.49924 * 174.59098 * 13 12 11 38 38 H 1.09005 * 109.49589 * 294.68653 * 13 12 11 39 39 H 1.08998 * 109.45513 * 58.66330 * 14 13 12 40 40 H 1.09004 * 109.45353 * 178.61644 * 14 13 12 41 41 H 0.96998 * 120.00150 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.58490 * 353.37198 * 25 11 9 43 43 H 1.09000 * 109.58780 * 113.79926 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0098 -0.8685 -0.5480 5 6 3.1554 1.2772 -0.6723 6 6 4.6803 1.2210 -0.7844 7 6 5.1897 2.4977 -1.4560 8 7 3.1343 -0.0526 1.3801 9 6 3.2636 -1.2404 2.0039 10 8 3.0638 -2.2727 1.3932 11 7 3.6143 -1.2840 3.3044 12 6 3.9665 -0.0538 4.0264 13 6 3.1054 0.0401 5.2899 14 6 3.2711 -1.2403 6.1116 15 6 2.7947 -2.4407 5.2905 16 1 1.7513 -2.2982 5.0095 17 6 2.9280 -3.6969 6.1122 18 1 3.3115 -3.6444 7.1204 19 6 2.5605 -4.9131 5.5768 20 7 2.6773 -6.0095 6.2937 21 14 1.8966 -5.0037 3.8330 22 1 3.0215 -5.2068 2.8851 23 1 0.9459 -6.1392 3.7237 24 1 1.1948 -3.7370 3.5042 25 6 3.6524 -2.5627 4.0271 26 1 -1.0500 -0.0005 -0.0009 27 1 2.7207 1.3616 -1.6683 28 1 2.8666 2.1423 -0.0753 29 1 5.1149 1.1365 0.2116 30 1 4.9690 0.3559 -1.3813 31 1 6.2760 2.4574 -1.5363 32 1 4.7550 2.5826 -2.4521 33 1 4.9009 3.3626 -0.8588 34 1 3.3647 0.7670 1.8451 35 1 5.0203 -0.0817 4.3037 36 1 3.7769 0.8105 3.3899 37 1 3.4229 0.8972 5.8837 38 1 2.0589 0.1592 5.0089 39 1 4.3215 -1.3717 6.3713 40 1 2.6784 -1.1657 7.0234 41 1 2.4184 -6.8651 5.9171 42 1 3.2555 -3.3538 3.3909 43 1 4.6806 -2.7952 4.3044 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852274655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:03 Heat of formation + Delta-G solvation = -4.620519 kcal Electronic energy + Delta-G solvation = -22429.226079 eV Core-core repulsion = 19281.814560 eV Total energy + Delta-G solvation = -3147.411519 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.59880 -39.06339 -37.66351 -35.46508 -34.52166 -33.90830 -33.11477 -32.15585 -29.79964 -27.04382 -26.33591 -24.91272 -23.58804 -22.08313 -21.87070 -20.55763 -19.63875 -19.09235 -18.74916 -17.61699 -16.72671 -16.58856 -16.00412 -15.68385 -15.46587 -15.36182 -15.23235 -14.92535 -14.73062 -14.43252 -14.00085 -13.75714 -13.43261 -13.19959 -12.96607 -12.81855 -12.56208 -12.34499 -12.16147 -11.99162 -11.90210 -11.62121 -11.60110 -11.55061 -11.33736 -11.12680 -11.06780 -10.98807 -10.81696 -10.48684 -9.49152 -8.41105 -6.42058 1.20293 1.25482 1.30092 1.39853 1.80827 2.03946 2.06826 2.19066 2.93976 3.00464 3.33422 3.87950 3.96081 4.01983 4.06251 4.12929 4.18932 4.42560 4.43664 4.51097 4.60366 4.65221 4.71060 4.78744 4.85885 4.87613 4.97510 4.97877 5.09182 5.12237 5.19599 5.27333 5.27866 5.39358 5.45184 5.48839 5.52261 5.60891 5.68503 5.94879 6.25561 6.60050 6.66758 6.94904 7.23684 7.48543 8.75055 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020300 B = 0.005275 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.951833 B = 5306.627815 C = 5886.769883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.234 4.234 3 C 0.267 3.733 4 H 0.085 0.915 5 C -0.104 4.104 6 C -0.124 4.124 7 C -0.148 4.148 8 N -0.720 5.720 9 C 0.697 3.303 10 O -0.642 6.642 11 N -0.627 5.627 12 C 0.109 3.891 13 C -0.127 4.127 14 C -0.097 4.097 15 C 0.004 3.996 16 H 0.010 0.990 17 C -0.510 4.510 18 H 0.054 0.946 19 C 0.033 3.967 20 N -0.936 5.936 21 Si 0.937 3.063 22 H -0.284 1.284 23 H -0.293 1.293 24 H -0.274 1.274 25 C 0.127 3.873 26 H 0.244 0.756 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.413 0.587 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.267 0.733 42 H 0.045 0.955 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.650 22.882 -13.048 26.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.236 4.236 3 C 0.162 3.838 4 H 0.103 0.897 5 C -0.142 4.142 6 C -0.162 4.162 7 C -0.205 4.205 8 N -0.379 5.379 9 C 0.399 3.601 10 O -0.524 6.524 11 N -0.363 5.363 12 C -0.013 4.013 13 C -0.165 4.165 14 C -0.135 4.135 15 C -0.016 4.016 16 H 0.028 0.972 17 C -0.548 4.548 18 H 0.072 0.928 19 C -0.166 4.166 20 N -0.576 5.576 21 Si 0.768 3.232 22 H -0.211 1.211 23 H -0.221 1.221 24 H -0.200 1.200 25 C 0.004 3.996 26 H 0.261 0.739 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.253 0.747 35 H 0.106 0.894 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.519 21.985 -13.464 25.903 hybrid contribution -0.647 -0.945 -0.377 1.206 sum 1.871 21.040 -13.841 25.254 Atomic orbital electron populations 1.25767 0.96925 1.00173 0.97601 1.24115 0.95825 1.01142 1.02492 1.17815 0.82613 1.01314 0.82061 0.89733 1.21813 0.96494 0.94225 1.01675 1.21526 0.94045 0.99094 1.01541 1.21733 1.01101 0.96822 1.00835 1.45126 1.70887 1.06856 1.14995 1.16191 0.77737 0.84339 0.81872 1.90867 1.60379 1.34746 1.66406 1.47578 1.70806 1.09764 1.08119 1.21974 1.00375 0.85012 0.93894 1.21944 0.99935 0.98359 0.96260 1.21365 1.01047 0.93238 0.97819 1.19439 0.94425 0.95347 0.92395 0.97204 1.21328 1.41876 0.91039 1.00583 0.92770 1.25555 0.95477 0.95893 0.99703 1.69970 1.49941 0.99127 1.38562 0.86088 0.78570 0.76916 0.81661 1.21073 1.22051 1.19978 1.21987 1.00519 0.83891 0.93252 0.73947 0.88895 0.89263 0.91797 0.92694 0.92446 0.92275 0.91698 0.74705 0.89358 0.87703 0.87174 0.92742 0.91933 0.92552 0.92324 0.93699 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.60 19.25 74.32 1.43 -3.17 16 2 C -0.23 -6.43 12.84 31.13 0.40 -6.03 16 3 C 0.27 6.59 2.46 43.19 0.11 6.70 16 4 H 0.08 2.51 7.51 -2.39 -0.02 2.50 16 5 C -0.10 -1.55 4.71 30.60 0.14 -1.40 16 6 C -0.12 -1.74 5.82 30.59 0.18 -1.56 16 7 C -0.15 -1.52 9.91 71.98 0.71 -0.81 16 8 N -0.72 -18.92 4.41 -466.56 -2.06 -20.97 16 9 C 0.70 26.54 8.24 179.05 1.48 28.02 16 10 O -0.64 -31.44 15.41 -3.99 -0.06 -31.50 16 11 N -0.63 -22.87 2.97 -836.91 -2.49 -25.36 16 12 C 0.11 2.60 6.43 86.36 0.56 3.15 16 13 C -0.13 -3.21 6.08 30.67 0.19 -3.02 16 14 C -0.10 -3.47 5.10 30.62 0.16 -3.31 16 15 C 0.00 0.18 1.84 -11.46 -0.02 0.15 16 16 H 0.01 0.50 7.21 -2.39 -0.02 0.49 16 17 C -0.51 -29.22 9.14 25.60 0.23 -28.99 16 18 H 0.05 3.30 7.99 -2.91 -0.02 3.28 16 19 C 0.03 1.97 5.45 84.65 0.46 2.43 16 20 N -0.94 -59.54 13.96 21.45 0.30 -59.24 16 21 Si 0.94 51.80 24.32 68.60 1.67 53.47 16 22 H -0.28 -16.05 6.92 99.48 0.69 -15.36 16 23 H -0.29 -15.77 7.11 99.48 0.71 -15.06 16 24 H -0.27 -15.37 6.53 99.48 0.65 -14.72 16 25 C 0.13 5.84 5.09 86.36 0.44 6.28 16 26 H 0.24 4.07 7.80 -4.42 -0.03 4.03 16 27 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 0.93 7.75 -2.39 -0.02 0.91 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.41 7.60 6.06 -92.70 -0.56 7.04 16 35 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.11 1.66 5.57 -2.39 -0.01 1.65 16 37 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 42 H 0.04 2.40 2.35 -2.39 -0.01 2.39 16 43 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 Total: -1.00 -79.97 342.25 4.17 -75.80 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.35 Total: 9.37 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 6.46 Total: -1.57 kcal Atomic # 7 Polarization: -101.33 SS G_CDS: -4.25 Total: -105.57 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -0.06 Total: -31.50 kcal Atomic # 14 Polarization: 51.80 SS G_CDS: 1.67 Total: 53.47 kcal Total: -79.97 4.17 -75.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852274655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.183 kcal (2) G-P(sol) polarization free energy of solvation -79.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds