Wall clock time and date at job start Tue Mar 31 2020 00:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.08995 * 109.47103 * 49.90239 * 3 2 1 5 5 C 1.52994 * 109.47036 * 289.90260 * 3 2 1 6 6 C 1.53004 * 109.47078 * 175.00385 * 5 3 2 7 7 C 1.52994 * 109.47078 * 179.97438 * 6 5 3 8 8 N 1.46495 * 109.46464 * 169.90430 * 3 2 1 9 9 C 1.34780 * 120.00122 * 274.99472 * 8 3 2 10 10 O 1.21586 * 119.99872 * 4.98896 * 9 8 3 11 11 N 1.34776 * 120.00226 * 184.98575 * 9 8 3 12 12 C 1.46934 * 120.63011 * 354.76044 * 11 9 8 13 13 C 1.53192 * 108.89248 * 233.56228 * 12 11 9 14 14 C 1.53077 * 109.29318 * 305.57674 * 13 12 11 15 15 C 1.53043 * 109.65731 * 61.15447 * 14 13 12 16 16 H 1.08997 * 109.49639 * 58.65511 * 15 14 13 17 17 C 1.50699 * 109.49409 * 178.74596 * 15 14 13 18 18 H 1.07995 * 120.00174 * 34.89440 * 17 15 14 19 19 C 1.37884 * 120.00082 * 214.88759 * 17 15 14 20 20 N 1.31514 * 120.00349 * 174.99488 * 19 17 15 21 21 Si 1.86799 * 119.99564 * 354.99424 * 19 17 15 22 22 H 1.48506 * 109.47334 * 94.96631 * 21 19 17 23 23 H 1.48508 * 109.46966 * 214.96456 * 21 19 17 24 24 H 1.48500 * 109.47643 * 334.96574 * 21 19 17 25 25 C 1.46927 * 120.63159 * 174.78558 * 11 9 8 26 26 H 4.18738 * 15.04057 * 0.02562 * 4 2 1 27 27 H 1.09007 * 109.47232 * 295.00095 * 5 3 2 28 28 H 1.08998 * 109.47550 * 55.00258 * 5 3 2 29 29 H 1.08994 * 109.46795 * 299.99673 * 6 5 3 30 30 H 1.08998 * 109.46731 * 60.00278 * 6 5 3 31 31 H 1.08998 * 109.47550 * 59.99873 * 7 6 5 32 32 H 1.09003 * 109.47177 * 180.02562 * 7 6 5 33 33 H 1.09007 * 109.47232 * 299.99710 * 7 6 5 34 34 H 0.97007 * 120.00323 * 95.00165 * 8 3 2 35 35 H 1.09000 * 109.58588 * 353.41787 * 12 11 9 36 36 H 1.08995 * 109.58440 * 113.69935 * 12 11 9 37 37 H 1.09003 * 109.49897 * 65.38606 * 13 12 11 38 38 H 1.09003 * 109.49628 * 185.48592 * 13 12 11 39 39 H 1.09000 * 109.34803 * 301.13198 * 14 13 12 40 40 H 1.08998 * 109.43973 * 181.23688 * 14 13 12 41 41 H 0.96997 * 120.00119 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.58297 * 246.15493 * 25 11 9 43 43 H 1.08997 * 109.58295 * 6.43473 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0096 -0.6611 -0.7861 5 6 3.1562 -0.4902 1.3563 6 6 4.6811 -0.6082 1.3153 7 6 5.1914 -1.0984 2.6718 8 7 3.1336 1.3607 -0.2421 9 6 3.2621 1.8159 -1.5042 10 8 2.8887 1.1324 -2.4379 11 7 3.8045 3.0286 -1.7313 12 6 4.1549 3.9135 -0.6119 13 6 3.4878 5.2754 -0.8286 14 6 3.8774 5.8159 -2.2067 15 6 3.3875 4.8561 -3.2935 16 1 2.3057 4.7448 -3.2198 17 6 3.7458 5.4069 -4.6497 18 1 4.6669 5.9545 -4.7839 19 6 2.8977 5.2116 -5.7192 20 7 3.1605 5.7748 -6.8782 21 14 1.3755 4.1471 -5.5217 22 1 0.2070 5.0078 -5.2067 23 1 1.1204 3.4090 -6.7848 24 1 1.5888 3.1783 -4.4167 25 6 4.0561 3.4911 -3.1030 26 1 -1.0500 -0.0001 -0.0009 27 1 2.8675 0.2196 2.1316 28 1 2.7221 -1.4654 1.5766 29 1 4.9698 -1.3179 0.5400 30 1 5.1152 0.3670 1.0951 31 1 4.7573 -2.0736 2.8925 32 1 6.2778 -1.1821 2.6427 33 1 4.9027 -0.3883 3.4468 34 1 3.3640 1.9338 0.5059 35 1 3.8013 3.4780 0.3227 36 1 5.2368 4.0390 -0.5702 37 1 2.4049 5.1623 -0.7771 38 1 3.8188 5.9696 -0.0561 39 1 4.9620 5.9075 -2.2653 40 1 3.4217 6.7949 -2.3545 41 1 2.5637 5.6377 -7.6305 42 1 5.1299 3.5843 -3.2659 43 1 3.6397 2.7757 -3.8120 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852274658.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:07 Heat of formation + Delta-G solvation = 11.233103 kcal Electronic energy + Delta-G solvation = -22257.654099 eV Core-core repulsion = 19110.930045 eV Total energy + Delta-G solvation = -3146.724054 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.11593 -37.67912 -36.35494 -33.79695 -33.35927 -32.35411 -31.66148 -30.43797 -28.86223 -25.21328 -24.95511 -23.83631 -21.87571 -21.36234 -20.31232 -19.01988 -18.43258 -17.67925 -16.73069 -16.35325 -15.30250 -15.11084 -14.68201 -14.37845 -14.07817 -13.95595 -13.78160 -13.57066 -13.06156 -12.74204 -12.60296 -12.44467 -12.26569 -12.14130 -11.81612 -11.33772 -11.27481 -11.05844 -10.93976 -10.61333 -10.55304 -10.49721 -10.12788 -10.02476 -9.72746 -9.64332 -9.32296 -9.15605 -9.06563 -8.58403 -7.93081 -6.08335 -4.09033 2.50535 2.85347 3.31508 3.36213 3.46643 3.55616 3.61803 4.18658 4.26178 4.48052 4.69902 4.71793 4.85004 5.10501 5.17932 5.23120 5.28910 5.36620 5.44585 5.49815 5.51917 5.67725 5.80859 5.83109 5.92211 5.97630 6.00861 6.05784 6.17593 6.29111 6.42570 6.57812 6.64797 6.69564 6.77415 6.96737 7.25771 7.34590 7.45449 7.63986 7.78285 8.29129 8.51288 8.95431 8.98801 9.55719 11.03967 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020716 B = 0.004975 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.286858 B = 5626.450964 C = 6290.992661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.193 4.193 3 C 0.273 3.727 4 H 0.107 0.893 5 C -0.119 4.119 6 C -0.125 4.125 7 C -0.151 4.151 8 N -0.744 5.744 9 C 0.702 3.298 10 O -0.587 6.587 11 N -0.624 5.624 12 C 0.117 3.883 13 C -0.137 4.137 14 C -0.102 4.102 15 C 0.006 3.994 16 H 0.034 0.966 17 C -0.514 4.514 18 H 0.075 0.925 19 C 0.077 3.923 20 N -0.897 5.897 21 Si 0.865 3.135 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.250 1.250 25 C 0.129 3.871 26 H 0.215 0.785 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.394 0.606 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.264 0.736 42 H 0.058 0.942 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.227 -10.170 20.706 23.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.195 4.195 3 C 0.167 3.833 4 H 0.125 0.875 5 C -0.157 4.157 6 C -0.163 4.163 7 C -0.209 4.209 8 N -0.403 5.403 9 C 0.404 3.596 10 O -0.464 6.464 11 N -0.361 5.361 12 C -0.007 4.007 13 C -0.176 4.176 14 C -0.140 4.140 15 C -0.014 4.014 16 H 0.052 0.948 17 C -0.552 4.552 18 H 0.093 0.907 19 C -0.126 4.126 20 N -0.534 5.534 21 Si 0.692 3.308 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.173 1.173 25 C 0.007 3.993 26 H 0.232 0.768 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.231 0.769 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.959 -10.650 19.789 22.493 hybrid contribution -1.083 -0.145 0.281 1.128 sum -0.124 -10.794 20.069 22.788 Atomic orbital electron populations 1.24909 0.95912 0.99221 1.01306 1.23640 0.94899 1.01043 0.99885 1.17610 0.82908 0.84303 0.98465 0.87532 1.21862 0.96336 1.02307 0.95178 1.21535 0.94459 1.02282 0.97991 1.21765 1.01007 1.01120 0.96991 1.45393 1.72289 1.15554 1.07048 1.15968 0.78659 0.82094 0.82913 1.90913 1.55263 1.58059 1.42176 1.47752 1.64801 1.14513 1.08994 1.21529 0.99611 0.91244 0.88340 1.22015 1.00581 0.95531 0.99452 1.21548 1.00457 0.99610 0.92414 1.19477 0.96084 0.90594 0.95243 0.94786 1.20893 1.08089 1.35125 0.91086 0.90705 1.25051 0.97635 0.94763 0.95156 1.69904 1.38274 1.43257 1.01942 0.87010 0.83357 0.81776 0.78643 1.20667 1.21388 1.17330 1.22379 0.99951 0.98286 0.78657 0.76808 0.91089 0.90019 0.91516 0.91440 0.92753 0.92602 0.92754 0.76870 0.91962 0.91648 0.92243 0.91788 0.92776 0.92226 0.92595 0.92348 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.55 19.25 29.55 0.57 -1.98 16 2 C -0.19 -2.74 12.84 -37.12 -0.48 -3.21 16 3 C 0.27 3.45 2.38 -70.72 -0.17 3.28 16 4 H 0.11 1.51 7.65 -51.93 -0.40 1.11 16 5 C -0.12 -1.01 4.71 -26.73 -0.13 -1.14 16 6 C -0.13 -0.99 5.82 -26.73 -0.16 -1.15 16 7 C -0.15 -0.98 9.91 37.15 0.37 -0.61 16 8 N -0.74 -10.30 4.40 -61.45 -0.27 -10.57 16 9 C 0.70 13.29 8.24 -86.92 -0.72 12.58 16 10 O -0.59 -13.81 15.47 5.29 0.08 -13.73 16 11 N -0.62 -11.48 2.97 -178.50 -0.53 -12.01 16 12 C 0.12 1.61 6.38 -3.71 -0.02 1.59 16 13 C -0.14 -2.04 6.09 -26.59 -0.16 -2.21 16 14 C -0.10 -1.94 5.14 -26.67 -0.14 -2.08 16 15 C 0.01 0.14 1.79 -91.65 -0.16 -0.03 16 16 H 0.03 0.85 5.60 -51.93 -0.29 0.56 16 17 C -0.51 -14.22 8.86 -34.44 -0.31 -14.53 16 18 H 0.07 2.21 8.06 -52.49 -0.42 1.79 16 19 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 20 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 21 Si 0.87 22.66 26.62 -169.99 -4.53 18.14 16 22 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 24 H -0.25 -6.69 5.98 56.52 0.34 -6.35 16 25 C 0.13 2.83 5.52 -3.71 -0.02 2.81 16 26 H 0.22 2.03 7.80 -54.09 -0.42 1.61 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.57 7.75 -51.93 -0.40 0.17 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.39 4.32 6.09 -40.82 -0.25 4.07 16 35 H 0.06 0.67 5.65 -51.93 -0.29 0.37 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.08 2.10 5.88 -51.93 -0.31 1.79 16 LS Contribution 346.53 15.07 5.22 5.22 Total: -1.00 -34.31 346.53 -7.92 -42.23 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -7.05 Total: 2.04 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -1.61 Total: -4.54 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.03 Total: -49.36 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.08 Total: -13.73 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.53 Total: 18.14 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.31 -7.92 -42.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852274658.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.460 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds