Wall clock time and date at job start Tue Mar 31 2020 00:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.08995 * 109.47103 * 49.90239 * 3 2 1 5 5 C 1.52994 * 109.47036 * 289.90260 * 3 2 1 6 6 C 1.53004 * 109.47078 * 175.00385 * 5 3 2 7 7 C 1.52994 * 109.47078 * 179.97438 * 6 5 3 8 8 N 1.46495 * 109.46464 * 169.90430 * 3 2 1 9 9 C 1.34780 * 120.00122 * 274.99472 * 8 3 2 10 10 O 1.21586 * 119.99872 * 4.98896 * 9 8 3 11 11 N 1.34776 * 120.00226 * 184.98575 * 9 8 3 12 12 C 1.46934 * 120.63011 * 354.76044 * 11 9 8 13 13 C 1.53192 * 108.89248 * 233.56228 * 12 11 9 14 14 C 1.53077 * 109.29318 * 305.57674 * 13 12 11 15 15 C 1.53043 * 109.65731 * 61.15447 * 14 13 12 16 16 H 1.08997 * 109.49639 * 58.65511 * 15 14 13 17 17 C 1.50699 * 109.49409 * 178.74596 * 15 14 13 18 18 H 1.07995 * 120.00174 * 34.89440 * 17 15 14 19 19 C 1.37884 * 120.00082 * 214.88759 * 17 15 14 20 20 N 1.31514 * 120.00349 * 174.99488 * 19 17 15 21 21 Si 1.86799 * 119.99564 * 354.99424 * 19 17 15 22 22 H 1.48506 * 109.47334 * 94.96631 * 21 19 17 23 23 H 1.48508 * 109.46966 * 214.96456 * 21 19 17 24 24 H 1.48500 * 109.47643 * 334.96574 * 21 19 17 25 25 C 1.46927 * 120.63159 * 174.78558 * 11 9 8 26 26 H 4.18738 * 15.04057 * 0.02562 * 4 2 1 27 27 H 1.09007 * 109.47232 * 295.00095 * 5 3 2 28 28 H 1.08998 * 109.47550 * 55.00258 * 5 3 2 29 29 H 1.08994 * 109.46795 * 299.99673 * 6 5 3 30 30 H 1.08998 * 109.46731 * 60.00278 * 6 5 3 31 31 H 1.08998 * 109.47550 * 59.99873 * 7 6 5 32 32 H 1.09003 * 109.47177 * 180.02562 * 7 6 5 33 33 H 1.09007 * 109.47232 * 299.99710 * 7 6 5 34 34 H 0.97007 * 120.00323 * 95.00165 * 8 3 2 35 35 H 1.09000 * 109.58588 * 353.41787 * 12 11 9 36 36 H 1.08995 * 109.58440 * 113.69935 * 12 11 9 37 37 H 1.09003 * 109.49897 * 65.38606 * 13 12 11 38 38 H 1.09003 * 109.49628 * 185.48592 * 13 12 11 39 39 H 1.09000 * 109.34803 * 301.13198 * 14 13 12 40 40 H 1.08998 * 109.43973 * 181.23688 * 14 13 12 41 41 H 0.96997 * 120.00119 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.58297 * 246.15493 * 25 11 9 43 43 H 1.08997 * 109.58295 * 6.43473 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0096 -0.6611 -0.7861 5 6 3.1562 -0.4902 1.3563 6 6 4.6811 -0.6082 1.3153 7 6 5.1914 -1.0984 2.6718 8 7 3.1336 1.3607 -0.2421 9 6 3.2621 1.8159 -1.5042 10 8 2.8887 1.1324 -2.4379 11 7 3.8045 3.0286 -1.7313 12 6 4.1549 3.9135 -0.6119 13 6 3.4878 5.2754 -0.8286 14 6 3.8774 5.8159 -2.2067 15 6 3.3875 4.8561 -3.2935 16 1 2.3057 4.7448 -3.2198 17 6 3.7458 5.4069 -4.6497 18 1 4.6669 5.9545 -4.7839 19 6 2.8977 5.2116 -5.7192 20 7 3.1605 5.7748 -6.8782 21 14 1.3755 4.1471 -5.5217 22 1 0.2070 5.0078 -5.2067 23 1 1.1204 3.4090 -6.7848 24 1 1.5888 3.1783 -4.4167 25 6 4.0561 3.4911 -3.1030 26 1 -1.0500 -0.0001 -0.0009 27 1 2.8675 0.2196 2.1316 28 1 2.7221 -1.4654 1.5766 29 1 4.9698 -1.3179 0.5400 30 1 5.1152 0.3670 1.0951 31 1 4.7573 -2.0736 2.8925 32 1 6.2778 -1.1821 2.6427 33 1 4.9027 -0.3883 3.4468 34 1 3.3640 1.9338 0.5059 35 1 3.8013 3.4780 0.3227 36 1 5.2368 4.0390 -0.5702 37 1 2.4049 5.1623 -0.7771 38 1 3.8188 5.9696 -0.0561 39 1 4.9620 5.9075 -2.2653 40 1 3.4217 6.7949 -2.3545 41 1 2.5637 5.6377 -7.6305 42 1 5.1299 3.5843 -3.2659 43 1 3.6397 2.7757 -3.8120 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852274658.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:06 Heat of formation + Delta-G solvation = -10.803787 kcal Electronic energy + Delta-G solvation = -22258.609691 eV Core-core repulsion = 19110.930045 eV Total energy + Delta-G solvation = -3147.679645 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.51648 -38.98070 -37.61449 -35.38191 -34.49267 -33.87259 -33.03750 -32.08283 -29.77375 -27.07126 -26.22949 -24.87856 -23.39304 -22.06293 -21.82915 -20.52148 -19.59546 -19.17736 -18.63177 -17.54339 -16.69063 -16.36992 -15.97376 -15.62420 -15.48320 -15.24695 -15.10697 -14.89683 -14.60672 -14.29426 -14.05541 -13.74503 -13.40251 -13.10095 -12.91741 -12.73570 -12.59628 -12.53342 -12.06116 -11.96365 -11.80571 -11.65445 -11.55062 -11.52835 -11.27596 -11.11465 -11.09986 -10.92859 -10.78362 -10.45573 -9.43037 -8.36381 -6.37245 1.21633 1.30246 1.35115 1.47464 1.83731 2.06901 2.13275 2.27890 2.99805 3.05695 3.35671 3.90695 3.99737 4.03653 4.13673 4.16610 4.20559 4.43323 4.48372 4.59244 4.65985 4.68973 4.76743 4.81458 4.89239 4.97358 4.99377 5.03072 5.09835 5.11490 5.22602 5.29220 5.30017 5.44203 5.48379 5.50211 5.59046 5.66670 5.71005 6.01857 6.28834 6.63084 6.71626 7.00426 7.29405 7.55254 8.80093 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020716 B = 0.004975 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.286858 B = 5626.450964 C = 6290.992661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.231 4.231 3 C 0.269 3.731 4 H 0.084 0.916 5 C -0.105 4.105 6 C -0.124 4.124 7 C -0.148 4.148 8 N -0.721 5.721 9 C 0.697 3.303 10 O -0.641 6.641 11 N -0.627 5.627 12 C 0.111 3.889 13 C -0.129 4.129 14 C -0.100 4.100 15 C 0.005 3.995 16 H 0.017 0.983 17 C -0.508 4.508 18 H 0.047 0.953 19 C 0.027 3.973 20 N -0.941 5.941 21 Si 0.925 3.075 22 H -0.269 1.269 23 H -0.289 1.289 24 H -0.263 1.263 25 C 0.141 3.859 26 H 0.243 0.757 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.411 0.589 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.108 0.892 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.266 0.734 42 H 0.063 0.937 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.006 -10.482 24.568 26.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.233 4.233 3 C 0.164 3.836 4 H 0.102 0.898 5 C -0.143 4.143 6 C -0.162 4.162 7 C -0.205 4.205 8 N -0.380 5.380 9 C 0.398 3.602 10 O -0.522 6.522 11 N -0.363 5.363 12 C -0.011 4.011 13 C -0.167 4.167 14 C -0.138 4.138 15 C -0.015 4.015 16 H 0.035 0.965 17 C -0.546 4.546 18 H 0.065 0.935 19 C -0.172 4.172 20 N -0.581 5.581 21 Si 0.751 3.249 22 H -0.194 1.194 23 H -0.216 1.216 24 H -0.187 1.187 25 C 0.018 3.982 26 H 0.260 0.740 27 H 0.106 0.894 28 H 0.111 0.889 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.252 0.748 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.126 0.874 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.745 -10.946 23.739 26.152 hybrid contribution -0.977 -0.046 -0.888 1.321 sum -0.232 -10.992 22.851 25.358 Atomic orbital electron populations 1.25748 0.96924 0.97848 1.00291 1.24129 0.95849 1.02326 1.00961 1.17807 0.82634 0.83053 1.00094 0.89833 1.21815 0.96525 1.03075 0.92855 1.21526 0.94005 1.01943 0.98711 1.21735 1.01102 1.01578 0.96113 1.45162 1.71018 1.16224 1.05593 1.16182 0.78314 0.81846 0.83811 1.90877 1.57466 1.59577 1.44311 1.47630 1.64753 1.15215 1.08666 1.21912 1.01200 0.89989 0.88008 1.21966 1.00272 0.96799 0.97628 1.21448 1.00654 0.98106 0.93590 1.19444 0.95231 0.92318 0.94528 0.96481 1.21230 1.06527 1.33645 0.93226 0.93456 1.25693 1.00309 0.96050 0.95111 1.70007 1.39776 1.45442 1.02828 0.86075 0.81008 0.80069 0.77748 1.19434 1.21559 1.18716 1.21795 0.99523 0.96421 0.80504 0.74028 0.89370 0.88934 0.92605 0.91729 0.92296 0.92448 0.91774 0.74835 0.88010 0.89337 0.93062 0.87420 0.92121 0.93011 0.92485 0.91914 0.93774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.60 19.25 74.32 1.43 -3.17 16 2 C -0.23 -6.23 12.84 31.13 0.40 -5.83 16 3 C 0.27 6.46 2.38 43.19 0.10 6.57 16 4 H 0.08 2.40 7.65 -2.39 -0.02 2.38 16 5 C -0.10 -1.51 4.71 30.59 0.14 -1.37 16 6 C -0.12 -1.68 5.82 30.59 0.18 -1.50 16 7 C -0.15 -1.49 9.91 71.98 0.71 -0.77 16 8 N -0.72 -18.46 4.40 -466.59 -2.06 -20.51 16 9 C 0.70 25.85 8.24 179.05 1.47 27.32 16 10 O -0.64 -30.84 15.47 -3.99 -0.06 -30.90 16 11 N -0.63 -22.13 2.97 -836.91 -2.49 -24.62 16 12 C 0.11 2.60 6.38 86.36 0.55 3.15 16 13 C -0.13 -3.31 6.09 30.68 0.19 -3.13 16 14 C -0.10 -3.62 5.14 30.63 0.16 -3.47 16 15 C 0.00 0.22 1.79 -11.46 -0.02 0.20 16 16 H 0.02 0.85 5.60 -2.39 -0.01 0.84 16 17 C -0.51 -28.87 8.86 25.60 0.23 -28.64 16 18 H 0.05 2.90 8.06 -2.91 -0.02 2.87 16 19 C 0.03 1.60 5.47 84.66 0.46 2.06 16 20 N -0.94 -59.59 13.96 21.45 0.30 -59.29 16 21 Si 0.92 48.61 26.62 68.60 1.83 50.44 16 22 H -0.27 -13.48 7.11 99.48 0.71 -12.77 16 23 H -0.29 -15.13 7.11 99.48 0.71 -14.43 16 24 H -0.26 -14.30 5.98 99.48 0.59 -13.71 16 25 C 0.14 6.25 5.52 86.36 0.48 6.73 16 26 H 0.24 3.95 7.80 -4.42 -0.03 3.92 16 27 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.91 7.75 -2.39 -0.02 0.89 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 34 H 0.41 7.43 6.09 -92.70 -0.56 6.87 16 35 H 0.10 1.62 5.65 -2.39 -0.01 1.60 16 36 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 42 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.04 2.30 5.88 -2.39 -0.01 2.28 16 Total: -1.00 -78.81 346.53 4.31 -74.51 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.30 Total: 12.23 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 6.49 Total: -1.85 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -4.25 Total: -104.42 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.06 Total: -30.90 kcal Atomic # 14 Polarization: 48.61 SS G_CDS: 1.83 Total: 50.44 kcal Total: -78.81 4.31 -74.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852274658.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.702 kcal (2) G-P(sol) polarization free energy of solvation -78.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds