Wall clock time and date at job start Tue Mar 31 2020 00:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09006 * 109.46869 * 194.72654 * 3 2 1 5 5 C 1.53003 * 109.47189 * 314.72450 * 3 2 1 6 6 C 1.53004 * 109.47123 * 185.00158 * 5 3 2 7 7 C 1.52999 * 109.46795 * 180.02562 * 6 5 3 8 8 N 1.46499 * 109.47615 * 74.72996 * 3 2 1 9 9 C 1.34773 * 120.00045 * 85.27008 * 8 3 2 10 10 O 1.21588 * 119.99966 * 354.72079 * 9 8 3 11 11 N 1.34775 * 119.99529 * 174.71850 * 9 8 3 12 12 C 1.46923 * 120.63669 * 5.03831 * 11 9 8 13 13 C 1.53191 * 108.77876 * 233.58417 * 12 11 9 14 14 C 1.53042 * 109.30936 * 305.36536 * 13 12 11 15 15 C 1.53038 * 109.53989 * 61.36381 * 14 13 12 16 16 H 1.08998 * 109.49964 * 58.58647 * 15 14 13 17 17 C 1.50705 * 109.49622 * 178.68078 * 15 14 13 18 18 H 1.07999 * 119.99680 * 0.02562 * 17 15 14 19 19 C 1.37870 * 119.99830 * 180.02562 * 17 15 14 20 20 N 1.31511 * 120.00441 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 119.99879 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47240 * 89.99622 * 21 19 17 23 23 H 1.48500 * 109.47068 * 209.99926 * 21 19 17 24 24 H 1.48500 * 109.46954 * 329.99872 * 21 19 17 25 25 C 1.46935 * 120.62794 * 184.75627 * 11 9 8 26 26 H 4.18732 * 15.03998 * 359.97438 * 4 2 1 27 27 H 1.09000 * 109.46862 * 305.00400 * 5 3 2 28 28 H 1.08998 * 109.46831 * 64.99901 * 5 3 2 29 29 H 1.09000 * 109.46925 * 299.99856 * 6 5 3 30 30 H 1.08993 * 109.46922 * 60.00567 * 6 5 3 31 31 H 1.09004 * 109.46788 * 180.02562 * 7 6 5 32 32 H 1.08996 * 109.47345 * 300.00331 * 7 6 5 33 33 H 1.09007 * 109.47229 * 60.00013 * 7 6 5 34 34 H 0.97001 * 119.99769 * 265.00151 * 8 3 2 35 35 H 1.09000 * 109.58442 * 353.37176 * 12 11 9 36 36 H 1.08998 * 109.59073 * 113.65073 * 12 11 9 37 37 H 1.09004 * 109.49670 * 65.31182 * 13 12 11 38 38 H 1.08996 * 109.49800 * 185.40992 * 13 12 11 39 39 H 1.09003 * 109.45781 * 181.38399 * 14 13 12 40 40 H 1.08993 * 109.45768 * 301.35234 * 14 13 12 41 41 H 0.96999 * 120.00212 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.58363 * 246.20783 * 25 11 9 43 43 H 1.09000 * 109.58469 * 6.62485 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0088 0.9948 0.2613 5 6 3.1564 -1.0142 1.0249 6 6 4.6813 -0.9255 1.1147 7 6 5.1917 -1.9408 2.1391 8 7 3.1346 -0.3629 -1.3324 9 6 3.2681 0.5835 -2.2826 10 8 2.8935 1.7198 -2.0658 11 7 3.8169 0.2704 -3.4730 12 6 4.1733 -1.1191 -3.7909 13 6 5.6416 -1.1646 -4.2252 14 6 5.8595 -0.1806 -5.3769 15 6 5.5393 1.2394 -4.9045 16 1 6.1769 1.4936 -4.0578 17 6 5.7851 2.2113 -6.0297 18 1 6.1344 1.8523 -6.9865 19 6 5.5641 3.5585 -5.8376 20 7 5.1382 3.9955 -4.6726 21 14 5.8682 4.7631 -7.2325 22 1 4.6238 4.9254 -8.0265 23 1 6.2728 6.0775 -6.6722 24 1 6.9496 4.2440 -8.1079 25 6 4.0646 1.3113 -4.4801 26 1 -1.0500 -0.0008 -0.0007 27 1 2.7216 -0.7956 2.0002 28 1 2.8685 -2.0190 0.7157 29 1 5.1160 -1.1441 0.1393 30 1 4.9691 0.0793 1.4240 31 1 6.2780 -1.8772 2.2034 32 1 4.7569 -1.7227 3.1145 33 1 4.9038 -2.9455 1.8295 34 1 3.3657 -1.2841 -1.5295 35 1 4.0338 -1.7431 -2.9082 36 1 3.5394 -1.4831 -4.5995 37 1 6.2783 -0.8877 -3.3848 38 1 5.8922 -2.1726 -4.5555 39 1 6.8981 -0.2289 -5.7042 40 1 5.2044 -0.4432 -6.2076 41 1 4.9824 4.9433 -4.5376 42 1 3.4237 1.1423 -5.3455 43 1 3.8534 2.2913 -4.0523 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852274659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:10 Heat of formation + Delta-G solvation = 11.495180 kcal Electronic energy + Delta-G solvation = -22291.188026 eV Core-core repulsion = 19144.475337 eV Total energy + Delta-G solvation = -3146.712690 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.84302 -37.44627 -36.13436 -33.63916 -33.28871 -32.24245 -31.51703 -29.74161 -28.67568 -25.07527 -24.73347 -23.68416 -21.80991 -21.19888 -20.23621 -18.83978 -18.32058 -17.39842 -16.24516 -16.05789 -15.08265 -14.91002 -14.62970 -14.24618 -13.99097 -13.76616 -13.67903 -13.45693 -12.66970 -12.64334 -12.45268 -12.20737 -12.03611 -11.90276 -11.64192 -11.18241 -10.98058 -10.88786 -10.79410 -10.50203 -10.47644 -10.32484 -10.21057 -10.00987 -9.84701 -9.40963 -9.08343 -8.92851 -8.90237 -8.39962 -7.62427 -5.95829 -4.04745 2.66646 2.96174 3.33270 3.40668 3.42695 3.52842 3.84739 4.36433 4.42093 4.49643 4.84778 4.87041 4.98695 5.27748 5.32489 5.34352 5.43851 5.51352 5.58837 5.63227 5.65433 5.84175 5.94579 5.99100 6.08176 6.08767 6.17927 6.22027 6.33282 6.60308 6.68194 6.79785 6.83044 7.00814 7.09004 7.36252 7.52058 7.74051 7.77500 7.95476 8.08772 8.43689 8.60575 8.98781 9.27716 9.60803 11.09386 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019684 B = 0.004625 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.139374 B = 6051.959795 C = 6531.486364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.186 4.186 3 C 0.271 3.729 4 H 0.108 0.892 5 C -0.118 4.118 6 C -0.126 4.126 7 C -0.151 4.151 8 N -0.747 5.747 9 C 0.701 3.299 10 O -0.580 6.580 11 N -0.621 5.621 12 C 0.115 3.885 13 C -0.133 4.133 14 C -0.110 4.110 15 C 0.040 3.960 16 H 0.029 0.971 17 C -0.522 4.522 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.879 5.879 21 Si 0.891 3.109 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.275 1.275 25 C 0.129 3.871 26 H 0.214 0.786 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.392 0.608 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.263 0.737 42 H 0.038 0.962 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.182 -13.956 10.402 17.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.187 4.187 3 C 0.165 3.835 4 H 0.125 0.875 5 C -0.156 4.156 6 C -0.164 4.164 7 C -0.208 4.208 8 N -0.406 5.406 9 C 0.403 3.597 10 O -0.456 6.456 11 N -0.358 5.358 12 C -0.009 4.009 13 C -0.171 4.171 14 C -0.148 4.148 15 C 0.021 3.979 16 H 0.047 0.953 17 C -0.560 4.560 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.516 5.516 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.200 1.200 25 C 0.009 3.991 26 H 0.231 0.769 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.229 0.771 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.456 -12.908 10.631 17.076 hybrid contribution -0.053 0.189 -0.916 0.937 sum -3.509 -12.719 9.715 16.385 Atomic orbital electron populations 1.24854 0.95850 1.01693 0.99756 1.23710 0.94919 0.99612 1.00494 1.17607 0.82775 1.00518 0.82554 0.87474 1.21851 0.96382 0.98755 0.98594 1.21540 0.94437 1.00213 1.00176 1.21762 1.01025 0.99028 0.98984 1.45393 1.72504 1.11022 1.11644 1.15958 0.78884 0.84397 0.80456 1.90929 1.55151 1.19656 1.79896 1.47785 1.63844 1.08889 1.15280 1.21493 0.96580 0.83562 0.99243 1.21943 0.95522 0.99401 1.00233 1.21614 1.00318 0.96920 0.95905 1.19059 0.92107 0.90168 0.96558 0.95302 1.21078 1.45598 0.91311 0.98061 0.92409 1.25048 0.94908 0.98478 0.95542 1.69895 1.44689 1.14933 1.22127 0.86608 0.78484 0.80636 0.82354 1.20658 1.21227 1.19957 1.22276 0.98013 0.91364 0.87468 0.76895 0.90158 0.91231 0.91344 0.91425 0.92611 0.92837 0.92844 0.77115 0.92220 0.92193 0.92136 0.92375 0.93073 0.93229 0.92670 0.94331 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.72 19.25 29.55 0.57 -2.15 16 2 C -0.19 -2.77 12.84 -37.12 -0.48 -3.24 16 3 C 0.27 3.82 2.38 -70.72 -0.17 3.65 16 4 H 0.11 1.73 7.65 -51.93 -0.40 1.33 16 5 C -0.12 -1.17 4.71 -26.73 -0.13 -1.29 16 6 C -0.13 -1.23 5.82 -26.73 -0.16 -1.39 16 7 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 8 N -0.75 -11.52 4.41 -61.44 -0.27 -11.79 16 9 C 0.70 14.66 8.24 -86.92 -0.72 13.94 16 10 O -0.58 -14.90 15.49 5.29 0.08 -14.82 16 11 N -0.62 -12.73 2.97 -178.23 -0.53 -13.25 16 12 C 0.12 1.79 6.43 -3.71 -0.02 1.77 16 13 C -0.13 -2.10 6.08 -26.61 -0.16 -2.26 16 14 C -0.11 -2.18 5.10 -26.69 -0.14 -2.31 16 15 C 0.04 1.00 2.26 -91.43 -0.21 0.79 16 16 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.52 -14.23 8.56 -34.44 -0.29 -14.52 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 20 N -0.88 -25.95 11.41 55.43 0.63 -25.32 16 21 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.13 3.20 5.41 -3.48 -0.02 3.18 16 26 H 0.21 2.04 7.80 -54.09 -0.42 1.62 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.73 7.75 -51.93 -0.40 0.33 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.39 4.91 6.06 -40.82 -0.25 4.67 16 35 H 0.06 0.73 5.57 -51.93 -0.29 0.44 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.12 3.54 5.18 -51.93 -0.27 3.27 16 LS Contribution 349.34 15.07 5.26 5.26 Total: -1.00 -32.77 349.34 -8.55 -41.32 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -7.06 Total: 5.18 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -1.64 Total: -2.99 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.17 Total: -50.36 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: 0.08 Total: -14.82 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.77 -8.55 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852274659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.815 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds